Information report for OsPPR16
Gene Details
|
|
Functional Descriptions
- Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.
- We found that OsPPR16 is responsible for a single editing event at position 545 in the chloroplast rpoB mRNA, resulting in an amino acid change from serine to leucine in the
-subunit of the plastid-encoded RNA polymerase. - Thus, by editing the rpoB mRNA, OsPPR16 is required for faithful plastid transcription, which in turn is required for chlorophyll synthesis and efficient chloroplast development.
- In striking contrast to loss-of-function mutations of the putative orthologue in Arabidopsis, which were reported to have no visible phenotype, knock-out of OsPPR16 leads to impaired accumulation of RpoB, reduced expression of PEP-dependent genes and a pale phenotype during early plant development.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q9LHZ4
- EMBL: AK103359, AP014962
- AlphaFoldDB: Q9LHZ4
- EnsemblPlants: Os06t0112000-01
- Gramene: Os06t0112000-01
- KEGG: osa:4339896
- Orthologous matrix: RLNEAWD
- InterPro: IPR002885, IPR011990, IPR032867
- PANTHER: PTHR47928, PTHR47928:SF206
- PROSITE: PS51375
- Gene3D: 1.25.40.10
- OrthoDB: Q9LHZ4
- SWISS-MODEL: Q9LHZ4
- eggNOG: KOG4197
Homologs
- Brassica oleracea: Bol045745
- Brassica rapa: Brara.I04422
- Gossypium barbadense: Gobar.D03G069200, Gobar.A02G135500
- Gossypium hirsutum: Gohir.D03G065000, Gohir.A02G124200
- Rosa chinensis: RchiOBHm_Chr5g0011421
Sequences
cDNA Sequence
- >LOC_Os06g02200.1
GGGCGCGCGTAGCGAGTGCCAGTGGCGGTTGCATGTAGAGCCGCAGACCGCAGTCGAGATGGTGTGCTCCGTGGCTGCCACCGCCTCGCTCCTCCCCTCTCCTCCTCCCAAACCCACCGCCCTCGCCGCCGACGACCACCACGCCCGCCTCAGGGCGGCGGCCGCGCGCTCCGACCTGCCGGCCGCGCTGGCCGCCTTCGTCGCCATGTCCTCCGCCGGGGCGCCACCCGTCCTCCGCACCTTCACCTCCCTCCTCAAGCTCTGCGCCGCCCGCGGCGACCTCGCCACCGGCCGCGCCGTCCACGCGCAGCTCGCCGCCCGGGGGATAGACTCCGAGGCCCTCGCCGCCACCGCGCTGGCCAACATGTACGCCAAGTGCCGCCGCCCCGCCGACGCACGCAGGGTGTTCGACCGAATGCCTGTCCGGGACCGCGTCGCGTGGAACGCGCTCGTGGCCGGCTACGCGCGGAACGGCCTCGCCCGGATGGCCATGGAGATGGTCGTCAGGATGCAGGAGGAGGAAGGGGAGCGGCCTGACTCGATCACGCTCGTGTCCGTGCTTCCGGCCTGCGCGAACGCCAGGGCGCTTGCTGCCTGCCGAGAGGCGCACGCGTTCGCGATCCGTTCTGGGCTGGAAGAGCTTGTTAATGTCGCTACGGCCATCCTTGACGCCTACTGCAAGTGTGGGGACATCCGGGCAGCAAGGGTGGTCTTCGACTGGATGCCAACCAAGAACTCCGTGTCCTGGAATGCCATGATCGATGGATATGCACAGAATGGGGATTCAAGGGAGGCTCTGGCTCTTTTCAATAGGATGGTCGAGGAGGGTGTCGATGTGACGGATGTCTCTGTCCTGGCAGCACTGCAAGCGTGTGGGGAGCTTGGCTGTCTTGATGAAGGGATGCGTGTCCATGAACTGCTTGTGCGGATTGGCTTAGACTCCAACGTGTCAGTGATGAATGCACTCATCACCATGTATTCCAAATGCAAGAGAGTTGACCTGGCATCTCATGTGTTTGATGAGTTGGACAGAAGGACGCAGGTATCGTGGAATGCCATGATCCTTGGATGCGCGCAGAATGGATGCTCCGAGGATGCGGTGAGGCTTTTTACTAGGATGCAGTTGGAGAATGTGAAACCTGATTCATTCACTCTTGTCAGTGTTATTCCAGCTCTTGCGGATATTTCAGATCCTCTGCAGGCAAGATGGATCCATGGATATTCTATCAGGTTACACCTAGATCAGGATGTATATGTTCTGACCGCCCTTATTGATATGTATGCAAAATGTGGCCGTGTTAACATAGCTAGAATTCTGTTCAATTCTGCAAGGGAGAGGCATGTTATCACATGGAACGCTATGATCCATGGTTATGGATCACATGGTTTTGGCAAAGCTGCAGTTGAGCTATTTGAAGAGATGAAGAGCATTGGCATAGTGCCTAATGAGACAACATTCCTTTCAGTCCTCTCTGCATGCAGTCATGCTGGTTTGGTTGATGAAGGACGGGAATATTTTACCAGCATGAAGGAGGACTATGGGCTTGAACCTGGGATGGAGCACTATGGTACCATGGTGGATCTTCTTGGCCGAGCCGGGAAGCTAGATGAAGCATGGGCTTTCATTCAAAAGATGCCTATGGACCCTGGCCTTAGTGTTTACGGTGCGATGTTAGGTGCTTGCAAGTTGCACAAGAATGTGGAGTTGGCAGAAGAATCGGCTCAGAAGATTTTTGAGCTAGGGCCACAGGAGGGAGTGTATCATGTCCTCTTGGCAAACATTTATGCAAACGCTTCCATGTGGAAGGATGTTGCAAGGGTGAGAACTGCTATGGAGAAGAATGGCCTCCAAAAAACTCCTGGATGGAGTATCATTCAACTCAAGAATGAGATCCATACCTTCTACTCTGGAAGCACAAATCACCAGCAAGCAAAGGAGATATATTCAAGGTTGGCTAAGTTGATAGAAGAGATCAAAGCAGTGGGCTATGTGCCAGACACTGATTCAATACATGATGTGGAAGATGATGTCAAAGCACAGCTGCTCAACACCCACAGCGAGAAGCTTGCCATTGCTTTTGGGCTCATTCGCACAGCCCCTGGCACAACAATCCAGATAAAGAAGAACCTCCGAGTTTGTAATGACTGCCATAATGCAACCAAGCTAATATCTTTAGTGACAGGACGGGAAATAATCATGAGAGATATTCAGCGATTCCACCATTTTAAGGATGGCAAATGCTCATGTGGAGACTACTGGTAGTGAAGTGTTGAGACAGTTTGAATCTGCACCCGGAGATGAGGGAGCTTCAGAAAGATCAGAGTATCAGATCTGACAATTAGGTGAAACTAATTGGCAAAGTTCTTAAGGGCTGTGCAGCTGCCTCTTATATCAACACTAAATGGCTAAACTTGTGAAGTATCTGAAAATTGTTATAGCCACTTCACCTTTTCAGGAAACATACTGCAAATTCCAGTCAGTCATTGTAAAATTGAAATGCTTCTATTTACATTAAGATACTAGTGCATAGGGAACCTGTTCTTCATAGCAACCATGACTTTCTCATGTCTTATCTTTGGCCTGAGATTAGATTCACATGTTCGGTCGAACTGTCAATAACTGAAAGTTATCATTTTCTTCT
CDS Sequence
- >LOC_Os06g02200.1
ATGGTGTGCTCCGTGGCTGCCACCGCCTCGCTCCTCCCCTCTCCTCCTCCCAAACCCACCGCCCTCGCCGCCGACGACCACCACGCCCGCCTCAGGGCGGCGGCCGCGCGCTCCGACCTGCCGGCCGCGCTGGCCGCCTTCGTCGCCATGTCCTCCGCCGGGGCGCCACCCGTCCTCCGCACCTTCACCTCCCTCCTCAAGCTCTGCGCCGCCCGCGGCGACCTCGCCACCGGCCGCGCCGTCCACGCGCAGCTCGCCGCCCGGGGGATAGACTCCGAGGCCCTCGCCGCCACCGCGCTGGCCAACATGTACGCCAAGTGCCGCCGCCCCGCCGACGCACGCAGGGTGTTCGACCGAATGCCTGTCCGGGACCGCGTCGCGTGGAACGCGCTCGTGGCCGGCTACGCGCGGAACGGCCTCGCCCGGATGGCCATGGAGATGGTCGTCAGGATGCAGGAGGAGGAAGGGGAGCGGCCTGACTCGATCACGCTCGTGTCCGTGCTTCCGGCCTGCGCGAACGCCAGGGCGCTTGCTGCCTGCCGAGAGGCGCACGCGTTCGCGATCCGTTCTGGGCTGGAAGAGCTTGTTAATGTCGCTACGGCCATCCTTGACGCCTACTGCAAGTGTGGGGACATCCGGGCAGCAAGGGTGGTCTTCGACTGGATGCCAACCAAGAACTCCGTGTCCTGGAATGCCATGATCGATGGATATGCACAGAATGGGGATTCAAGGGAGGCTCTGGCTCTTTTCAATAGGATGGTCGAGGAGGGTGTCGATGTGACGGATGTCTCTGTCCTGGCAGCACTGCAAGCGTGTGGGGAGCTTGGCTGTCTTGATGAAGGGATGCGTGTCCATGAACTGCTTGTGCGGATTGGCTTAGACTCCAACGTGTCAGTGATGAATGCACTCATCACCATGTATTCCAAATGCAAGAGAGTTGACCTGGCATCTCATGTGTTTGATGAGTTGGACAGAAGGACGCAGGTATCGTGGAATGCCATGATCCTTGGATGCGCGCAGAATGGATGCTCCGAGGATGCGGTGAGGCTTTTTACTAGGATGCAGTTGGAGAATGTGAAACCTGATTCATTCACTCTTGTCAGTGTTATTCCAGCTCTTGCGGATATTTCAGATCCTCTGCAGGCAAGATGGATCCATGGATATTCTATCAGGTTACACCTAGATCAGGATGTATATGTTCTGACCGCCCTTATTGATATGTATGCAAAATGTGGCCGTGTTAACATAGCTAGAATTCTGTTCAATTCTGCAAGGGAGAGGCATGTTATCACATGGAACGCTATGATCCATGGTTATGGATCACATGGTTTTGGCAAAGCTGCAGTTGAGCTATTTGAAGAGATGAAGAGCATTGGCATAGTGCCTAATGAGACAACATTCCTTTCAGTCCTCTCTGCATGCAGTCATGCTGGTTTGGTTGATGAAGGACGGGAATATTTTACCAGCATGAAGGAGGACTATGGGCTTGAACCTGGGATGGAGCACTATGGTACCATGGTGGATCTTCTTGGCCGAGCCGGGAAGCTAGATGAAGCATGGGCTTTCATTCAAAAGATGCCTATGGACCCTGGCCTTAGTGTTTACGGTGCGATGTTAGGTGCTTGCAAGTTGCACAAGAATGTGGAGTTGGCAGAAGAATCGGCTCAGAAGATTTTTGAGCTAGGGCCACAGGAGGGAGTGTATCATGTCCTCTTGGCAAACATTTATGCAAACGCTTCCATGTGGAAGGATGTTGCAAGGGTGAGAACTGCTATGGAGAAGAATGGCCTCCAAAAAACTCCTGGATGGAGTATCATTCAACTCAAGAATGAGATCCATACCTTCTACTCTGGAAGCACAAATCACCAGCAAGCAAAGGAGATATATTCAAGGTTGGCTAAGTTGATAGAAGAGATCAAAGCAGTGGGCTATGTGCCAGACACTGATTCAATACATGATGTGGAAGATGATGTCAAAGCACAGCTGCTCAACACCCACAGCGAGAAGCTTGCCATTGCTTTTGGGCTCATTCGCACAGCCCCTGGCACAACAATCCAGATAAAGAAGAACCTCCGAGTTTGTAATGACTGCCATAATGCAACCAAGCTAATATCTTTAGTGACAGGACGGGAAATAATCATGAGAGATATTCAGCGATTCCACCATTTTAAGGATGGCAAATGCTCATGTGGAGACTACTGGTAG
Protein Sequence
- >LOC_Os06g02200.1
MVCSVAATASLLPSPPPKPTALAADDHHARLRAAAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW*