Gene Details:
- MSU gene ID: LOC_Os05g49220
- RAPdb gene ID: Os05g0567300
- Gene Symbol: WSL6
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.
- Rice WSL6 is involved in chloroplast ribosome biogenesis and is essential for early chloroplast development.
- Transmission electron microscopy analysis showed that the WSL6 mutant was defective in early chloroplast development.
- Further research showed that WSL6 binds to the 16S ribosomal RNA (rRNA) subunit of chloroplast ribosome 30S.
- In summary, these results show that WSL6 is essential for chloroplast ribosome biogenesis during early chloroplast development in rice.
- Map-based cloning revealed that WSL6 encodes an Era-type guanosine-5’-triphosphate (GTP)-binding protein located in chloroplasts.
Function-related keywords:
Literature:
- WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice . DOI: 10.1007/s11103-019-00885-z ; PMID: 31147815
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os05g49220.2
ATCCCCTTCTGCTGCGGCGAGCCACACTCCCAAGCCGAGGAGCTCTCGCTTGCGACAGCCATGGAGCTAGGCCTCGCGCTGCGGCTCGTCGCGCCGCCGCCTCGTCTCCCCTGTAGAGCTCTCCAGCCGCCGCCGATGCCTTGTTTCTCTCCGTGTGCGGCCCGAAGAAGCCGCATCCGCTCCTCGAGGTTGGAGCGCAGGGTTGGGGTTGTTGTATCCGGTGGGAGTATGGCTTCCTTGGCAATGGAGGAGGAGGAAGAGGAAGAGTGGGAAGAAGCGGAGGAAGAAGCGGAAGGATGGCAAGAGGAGGAGGCTGCAGTGGTGACGACGAGGCCGCGTCTGGAGCTCATCGAGAAGCCGGACCGGAGCCTGTGTCTGCTCGACGAGTACGAGTCGGAGGAGCTAGGCACCTCTCATTGTGCCAACCACCGCAGCGGTTATGTTGCTGTATTAGGAAAGCCAAATGTTGGAAAGAGCACCCTAATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACACGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGTTTGCAGATAATACTTTATGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCACTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACCTTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCACAAAATTTTGTGTGCCCACTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTGTATCATTGGATGGTTGAAAGCCAAGTCAGTACTAGTAGCTGATTGGAGGCAATCCTTTTGCGAGATAAAACCCAAGGAGAAGAGAAAAGAAAATACTGGGGCACTTATAGCCTGATGG - >LOC_Os05g49220.1
ATCCCCTTCTGCTGCGGCGAGCCACACTCCCAAGCCGAGGAGCTCTCGCTTGCGACAGCCATGGAGCTAGGCCTCGCGCTGCGGCTCGTCGCGCCGCCGCCTCGTCTCCCCTGTAGAGCTCTCCAGCCGCCGCCGATGCCTTGTTTCTCTCCGTGTGCGGCCCGAAGAAGCCGCATCCGCTCCTCGAGGTTGGAGCGCAGGGTTGGGGTTGTTGTATCCGGTGGGAGTATGGCTTCCTTGGCAATGGAGGAGGAGGAAGAGGAAGAGTGGGAAGAAGCGGAGGAAGAAGCGGAAGGATGGCAAGAGGAGGAGGCTGCAGTGGTGACGACGAGGCCGCGTCTGGAGCTCATCGAGAAGCCGGACCGGAGCCTGTGTCTGCTCGACGAGTACGAGTCGGAGGAGCTAGGCACCTCTCATTGTGCCAACCACCGCAGCGGTTATGTTGCTGTATTAGGAAAGCCAAATGTTGGAAAGAGCACCCTAATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACACGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGTTTGCAGATAATACTTTATGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCACTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACCTTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCACAAAATTTTGTGTGCCCACTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTGTATCATTGGATGGTTGAAAGCCAAGTCAGTACTAGTAGCTGATTGGAGGCAATCCTTTTGCGAGATAAAACCCAAGGAGAAGAGAAAAGAAAATACTGGGGCACTTATAGCCTGATGG
CDS Sequence
- >LOC_Os05g49220.2
ATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCACTATGA - >LOC_Os05g49220.1
ATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCACTATGA
Protein Sequence
- >LOC_Os05g49220.2
MHKLDTMMMKNVRSAVGSADCVLVVVDACKMPEKIDEILEEGVGNKDTELPVLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILVEKESQRSIILGKDGKAIKMLATASRLDIEDFLQKKVYLEIMVKVKENWRQDELLLKRYGYGGEIQAL* - >LOC_Os05g49220.1
MHKLDTMMMKNVRSAVGSADCVLVVVDACKMPEKIDEILEEGVGNKDTELPVLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPKDIASEHPERFFVGEIVREKIFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILVEKESQRSIILGKDGKAIKMLATASRLDIEDFLQKKVYLEIMVKVKENWRQDELLLKRYGYGGEIQAL*