Information report for OsSND2
Gene Details
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Functional Descriptions
- In this study, we isolated a NAC family transcription factor (TF), OsSND2 through yeast one-hybrid screening using the secondary wall NAC-binding element (SNBE) on the promoter region of OsMYB61 which is known transcription factor for regulation of SCWs biosynthesis as bait.
- Overexpression of OsSND2 resulted in rolled leaf, increased cellulose content and up-regulated expression of SCWs related genes.
- The knockout of OsSND2 using CRISPR/Cas9 system decreased cellulose content and down-regulated the expression of SCWs related genes.
- OsSND2 was identified as a positive regulator of cellulose biosynthesis in rice.
- Therefore, the study of the function of OsSND2 can provide a strategy for manipulating plant biomass production.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q6AUG9
- EMBL: AK100983, AP014961
- AlphaFoldDB: Q6AUG9
- EnsemblPlants: Os05t0563000-01
- Gramene: Os05t0563000-01
- KEGG: osa:4339612
- Orthologous matrix: HQIKCRE
- InterPro: IPR003441, IPR036093, IPR044799
- PANTHER: PTHR31079, PTHR31079:SF7
- SUPFAM: SSF101941
- PROSITE: PS51005
- Gene3D: 2.170.150.80
- OrthoDB: Q6AUG9
- SWISS-MODEL: Q6AUG9
- eggNOG: ENOG502QR2Y
Sequences
cDNA Sequence
- >LOC_Os05g48850.1
AAGCTTTCCTTCTTCTTTTTTCCCCCTCTCGACGATCTCTCTCTCATCAGGACCCCGGCCTTAAGTTGTTTCTTCCCTATCAGCTCAGGTCTCTCTCGATCTCTCCTAGCTAGATAGATAGCTTAATTAGCAGCTAGAGATGTGTCTCTAGCTAAGCTAACTAGCTAGTAGGCTTCTTCTTTTAATCCGGCATTGTTCTTGGCTGCTGGTCTTAGTTTTTGGCTGTCATGTATGGAGTTAGTGGTAAAATACTAGGTTAATTAATAATATAAGGCGTGTGTATATATTGGTGTGGAGGAGGAGGAGAAAGGGGGTTGGCCGGAGAGATCGATGACGTGGTGCAACAGCTTCAGCGACGTCCGCACCGCCGTGGACAGCAGCTTGTCGCCGGCCGCCGCCGTGGCCGCCGCCGCGGGGAAGAAGGCGGCGGCGTCGCTCGCCGTCCTCGTCAAGATGTGCCCCTCCTGCGGCCACCGCGCGCGGTATGAACAGGAGACGACGACGATCCAGGACCTGCCGGGGCTGCCGGCCGGAGTGAAGTTCGATCCGACGGACCAGGAGCTTCTTGAGCATTTGGAAGGGAAGGCGAGGCCGGACTCGAGGAAGCTCCACCCTCTCGTCGACGAGTTCATCCCCACCATCGAGGGCGAGAATGGCATCTGCTACACCCATCCCGAGAGGCTTCCCGGTGTGAGCAAGGACGGGCTGGTGAGGCACTTCTTCCACCGGCCGTCGAAGGCGTACACGACGGGGACGAGGAAGCGGCGGAAGGTGCACAGCGACGAGGTCGACGGCGGCGAGACGCGGTGGCACAAGACCGGCAAGACGAGACCGGTGATGGCCAACGGCCGGCCCAGGGGCTACAAGAAGATCCTCGTCCTCTACACCAACTACGGCAAGCAGCGCAAGCCGGAGAAGACCAACTGGGTGATGCACCAGTACCACCTCGGCTCCGACGAGGAGGAGCGGGACGGCGAGCTCGTCGTCTCCAAGGTCTTCTTCCAGACGCAGCCCAGGCAGTGCGGCTCCACCGCCGCCGCCGCCGCCGCCAAGGAGGCCTCCGCCGCCGTCGCCGCCGCCGTGGTGAACAGCAACTACTCCATCGTCCATGGCCATCAAGGTGGTGGTGGTGGTAGCTTTCTCAAGGAGGCAAACGTTGTGCACGAGTTCTACGACCCGGCAGCAACGATGGGTTACCGGCCACCTGCTCCTGCTGCGCACTTCGCGCCAAACTTCGCGGTGCACGCGGCAAGGAACAGCTTTGGTGGCCCTTGAAGGAAAAACCAAAATTACACAAAATCTAAACATTACCGTTTATACCGATATGATTCACATAGGTGCCATTATATTACATTCTTAACCTTACATTCATCCATCAGTTATTTGCAGTTTTGTTCAAAGTTGTTATATCGTTTCCGATGCTATACTGTGCAAAGATTATTACTACACGCCGTTCTAACTCGAAAATGTCAATTAATGTATCAGTTTGTACATGTATACATGCACACGGAAGAGGTCCTGATGATGCATCACTTCATAT
CDS Sequence
- >LOC_Os05g48850.1
ATGACGTGGTGCAACAGCTTCAGCGACGTCCGCACCGCCGTGGACAGCAGCTTGTCGCCGGCCGCCGCCGTGGCCGCCGCCGCGGGGAAGAAGGCGGCGGCGTCGCTCGCCGTCCTCGTCAAGATGTGCCCCTCCTGCGGCCACCGCGCGCGGTATGAACAGGAGACGACGACGATCCAGGACCTGCCGGGGCTGCCGGCCGGAGTGAAGTTCGATCCGACGGACCAGGAGCTTCTTGAGCATTTGGAAGGGAAGGCGAGGCCGGACTCGAGGAAGCTCCACCCTCTCGTCGACGAGTTCATCCCCACCATCGAGGGCGAGAATGGCATCTGCTACACCCATCCCGAGAGGCTTCCCGGTGTGAGCAAGGACGGGCTGGTGAGGCACTTCTTCCACCGGCCGTCGAAGGCGTACACGACGGGGACGAGGAAGCGGCGGAAGGTGCACAGCGACGAGGTCGACGGCGGCGAGACGCGGTGGCACAAGACCGGCAAGACGAGACCGGTGATGGCCAACGGCCGGCCCAGGGGCTACAAGAAGATCCTCGTCCTCTACACCAACTACGGCAAGCAGCGCAAGCCGGAGAAGACCAACTGGGTGATGCACCAGTACCACCTCGGCTCCGACGAGGAGGAGCGGGACGGCGAGCTCGTCGTCTCCAAGGTCTTCTTCCAGACGCAGCCCAGGCAGTGCGGCTCCACCGCCGCCGCCGCCGCCGCCAAGGAGGCCTCCGCCGCCGTCGCCGCCGCCGTGGTGAACAGCAACTACTCCATCGTCCATGGCCATCAAGGTGGTGGTGGTGGTAGCTTTCTCAAGGAGGCAAACGTTGTGCACGAGTTCTACGACCCGGCAGCAACGATGGGTTACCGGCCACCTGCTCCTGCTGCGCACTTCGCGCCAAACTTCGCGGTGCACGCGGCAAGGAACAGCTTTGGTGGCCCTTGA
Protein Sequence
- >LOC_Os05g48850.1
MTWCNSFSDVRTAVDSSLSPAAAVAAAAGKKAAASLAVLVKMCPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIPTIEGENGICYTHPERLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHSDEVDGGETRWHKTGKTRPVMANGRPRGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEERDGELVVSKVFFQTQPRQCGSTAAAAAAKEASAAVAAAVVNSNYSIVHGHQGGGGGSFLKEANVVHEFYDPAATMGYRPPAPAAHFAPNFAVHAARNSFGGP*