Gene Details:
- MSU gene ID: LOC_Os05g47950
- RAPdb gene ID: Os05g0552700
- Gene Symbol: EDR1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Here, we cloned the UDP-glucosyltransferase gene EDR1 (Endosperm Development in Rice) responsible for differential endosperm development between upland rice and paddy rice by performing QTL analysis and map-based cloning.
- Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality.
- Taken together, these results suggest that the UDP-glucosyltransferase gene EDR1 is an important determinant controlling differential endosperm development between upland rice and paddy rice.
- EDR1 was highly expressed in developing seeds during grain filling.
Function-related keywords:
- development , grain , quality , map-based-cloning , grain-filling , endosperm , endosperm-development , grain-quality
Literature:
- Natural alleles of a uridine 5’-diphospho-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice . DOI: 10.1111/jipb.13184 ; PMID: 34742166
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os05g47950.1
GAACTAGCAAGTAAACCTGCGGTGTTTCCAACACAACAAACGCTACAACCCTTGTAGGTTTCAGAGGAAAACACACGACACGAGCCGGAGGCAACAAGGCGCTCAGGTCCATGGAGCCTCACGTCCTCCTCGTGTCCTTCCCTATGCAGGGCCACGTCAACCCGCTCCTCCGCCTCGGCCGCCGCCTCGCCGCCACGGGCCTCCTCGTCACCTTCACCACCGTCCGCCTCGCCGCCGGCGGCGGCCGCCTCCGCGACGTGCCGGAGGACGGCGCGTGCGCCGACGTCGGGCTCGGCCGCCTGCGCTTCGAGTACCTGCGCGACGACGACGACGACGGCGACGAGCGGTGCCAGCAGCTGGCGCCCAACGACGTGCTGTCGCACGTCACGGCCGTGGGGCCATCGGCGCTCGCCGAGTTCATCGACGGCCAGGCCGACGCCGGCCGGCCGGTGACGTTCGTCGTGAACAACATCTTCGTGCCGTGGGCGCTCGACGTCGCCGCCGGGATGGGCATCCCGTGCGCCATGCTGTGGATCCAGCCGTGCTCCGTGCTGTCGATATACTACCACTTCTACGAGTCGCCCGAGGCGTTCCCTACCGCCGCCGACCCCGACGTGCCGGTCGAGCTCCCCGGCTTGCCGGTGATGGCCATGGTCGAGCTGCCTTTCATGGTTCGTCCCGAGTACGCGCAGTGCCTGTGGGGCGACACGCTCCGGGCGCAGGTCGGGGCGATCAAGAGGACGGTGTCCTGGGTGCTCGTCAACTCGTTCTACGAGCTCGAGCGCTCGGCCGTCGACGCGCTCCGCGCGCACACGACGGTCAAGCTCGCGCCCATCGGCCCTCTCCTGGAGCATGGCCATGACAACGGCGGCGGCGACGACGGCGCGCCGGCGCCGGCGCTAGGGGCCGAGGACAACGACCGCTGCGTGGCGTGGCTCGACGCGCAGCCGCCGCGCTCCGTGGTGTACGTGGCGTTCGGCAGCCTCGTGAACATCGGCCGCGACGAGACGGCGGCGGTGGCGGAGGGGCTCGTCGCCACCGGCAGGCCGTTCCTGTGGGTGGTGCGCGACGACAGCCGCGACCTCGTGCCGGAGGCCGTCCTCGCGGCGTGCCGCGGCGACAAGGCCGGCAAGATCACGGCGTGGTGCCCGCAGGGGCGCGTGCTCGCCCACGGCGCCGTCGGCTGCTTCGTGACGCACTGCGGGTGGAACTCCATCATGGAGGCGCTCGCCGCGGGCGTGCCGGTGGTCGGGTACCCGTGGTGGTCCGACCAGTTCGCGAACGCCAAGTTCTTGGTGGAGGACTACAAGGTCGGCGTCCGGCTACCGGCGCCGGTGACCGGCGGCGAGCTCCGAGCGTGCGTCGACCGCGTGATGAGCGGGCCGGAGGCGGCGGTGATCCGGAAGAGGGCGATGCATTGGAAGCGAGAAGCGGCGGCGGCGGTTGCCGACGGCGGTTCGTCGGATCGGAGCCTCCAGGATTTTGTCGACCATGTACGACGTTCCAAAGGACCGGAGGAGCTAGCTCGATTAGCTCAAGACATCCAGATTATGAATGGGCCGGTCAATCCGGTCCTAGTTTAATAAATCTAGCACAGCCCATGTACGGTCATGTGGGGGCTATGACGCTATGTAGTGTGTTAATCTATCTACTCCATTAAGTTGCTGTCGAGTCTAATCCTTGTTATCATAGGATTCCAAGGCTTACATAAAAAAACGGTGTAAAAAATGTAAGTTTGAAGTTTGAACACTCCAAGTCAAACACGATTACATCGTATTATACGAATTCAATTTCGTAAATCACAACAGATCATATAAAAATTGGGAGGTCGCTGTACCACAAGA
CDS Sequence
- >LOC_Os05g47950.1
ATGGAGCCTCACGTCCTCCTCGTGTCCTTCCCTATGCAGGGCCACGTCAACCCGCTCCTCCGCCTCGGCCGCCGCCTCGCCGCCACGGGCCTCCTCGTCACCTTCACCACCGTCCGCCTCGCCGCCGGCGGCGGCCGCCTCCGCGACGTGCCGGAGGACGGCGCGTGCGCCGACGTCGGGCTCGGCCGCCTGCGCTTCGAGTACCTGCGCGACGACGACGACGACGGCGACGAGCGGTGCCAGCAGCTGGCGCCCAACGACGTGCTGTCGCACGTCACGGCCGTGGGGCCATCGGCGCTCGCCGAGTTCATCGACGGCCAGGCCGACGCCGGCCGGCCGGTGACGTTCGTCGTGAACAACATCTTCGTGCCGTGGGCGCTCGACGTCGCCGCCGGGATGGGCATCCCGTGCGCCATGCTGTGGATCCAGCCGTGCTCCGTGCTGTCGATATACTACCACTTCTACGAGTCGCCCGAGGCGTTCCCTACCGCCGCCGACCCCGACGTGCCGGTCGAGCTCCCCGGCTTGCCGGTGATGGCCATGGTCGAGCTGCCTTTCATGGTTCGTCCCGAGTACGCGCAGTGCCTGTGGGGCGACACGCTCCGGGCGCAGGTCGGGGCGATCAAGAGGACGGTGTCCTGGGTGCTCGTCAACTCGTTCTACGAGCTCGAGCGCTCGGCCGTCGACGCGCTCCGCGCGCACACGACGGTCAAGCTCGCGCCCATCGGCCCTCTCCTGGAGCATGGCCATGACAACGGCGGCGGCGACGACGGCGCGCCGGCGCCGGCGCTAGGGGCCGAGGACAACGACCGCTGCGTGGCGTGGCTCGACGCGCAGCCGCCGCGCTCCGTGGTGTACGTGGCGTTCGGCAGCCTCGTGAACATCGGCCGCGACGAGACGGCGGCGGTGGCGGAGGGGCTCGTCGCCACCGGCAGGCCGTTCCTGTGGGTGGTGCGCGACGACAGCCGCGACCTCGTGCCGGAGGCCGTCCTCGCGGCGTGCCGCGGCGACAAGGCCGGCAAGATCACGGCGTGGTGCCCGCAGGGGCGCGTGCTCGCCCACGGCGCCGTCGGCTGCTTCGTGACGCACTGCGGGTGGAACTCCATCATGGAGGCGCTCGCCGCGGGCGTGCCGGTGGTCGGGTACCCGTGGTGGTCCGACCAGTTCGCGAACGCCAAGTTCTTGGTGGAGGACTACAAGGTCGGCGTCCGGCTACCGGCGCCGGTGACCGGCGGCGAGCTCCGAGCGTGCGTCGACCGCGTGATGAGCGGGCCGGAGGCGGCGGTGATCCGGAAGAGGGCGATGCATTGGAAGCGAGAAGCGGCGGCGGCGGTTGCCGACGGCGGTTCGTCGGATCGGAGCCTCCAGGATTTTGTCGACCATGTACGACGTTCCAAAGGACCGGAGGAGCTAGCTCGATTAGCTCAAGACATCCAGATTATGAATGGGCCGGTCAATCCGGTCCTAGTTTAA
Protein Sequence
- >LOC_Os05g47950.1
MEPHVLLVSFPMQGHVNPLLRLGRRLAATGLLVTFTTVRLAAGGGRLRDVPEDGACADVGLGRLRFEYLRDDDDDGDERCQQLAPNDVLSHVTAVGPSALAEFIDGQADAGRPVTFVVNNIFVPWALDVAAGMGIPCAMLWIQPCSVLSIYYHFYESPEAFPTAADPDVPVELPGLPVMAMVELPFMVRPEYAQCLWGDTLRAQVGAIKRTVSWVLVNSFYELERSAVDALRAHTTVKLAPIGPLLEHGHDNGGGDDGAPAPALGAEDNDRCVAWLDAQPPRSVVYVAFGSLVNIGRDETAAVAEGLVATGRPFLWVVRDDSRDLVPEAVLAACRGDKAGKITAWCPQGRVLAHGAVGCFVTHCGWNSIMEALAAGVPVVGYPWWSDQFANAKFLVEDYKVGVRLPAPVTGGELRACVDRVMSGPEAAVIRKRAMHWKREAAAAVADGGSSDRSLQDFVDHVRRSKGPEELARLAQDIQIMNGPVNPVLV*