Information report for EDR1
Gene Details
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Functional Descriptions
- Here, we cloned the UDP-glucosyltransferase gene EDR1 (Endosperm Development in Rice) responsible for differential endosperm development between upland rice and paddy rice by performing QTL analysis and map-based cloning.
- Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality.
- Taken together, these results suggest that the UDP-glucosyltransferase gene EDR1 is an important determinant controlling differential endosperm development between upland rice and paddy rice.
- EDR1 was highly expressed in developing seeds during grain filling.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q6AUC5
- EMBL: AK108674
- AlphaFoldDB: Q6AUC5
- EnsemblPlants: Os05t0552700-01
- Gramene: Os05t0552700-01
- KEGG: osa:4339543
- InterPro: IPR002213, IPR035595
- PANTHER: PTHR11926, PTHR11926:SF709
- SUPFAM: SSF53756
- PROSITE: PS00375
- Gene3D: 3.40.50.2000
- OrthoDB: Q6AUC5
- SWISS-MODEL: Q6AUC5
- Conserved Domain Database: cd03784
Homologs
- Arabidopsis thaliana: AT4G15490, AT4G15480, AT3G21560, AT4G15500, AT4G15550, AT1G05560, AT1G05680, AT1G05530, AT2G43820, AT2G43840, AT2G31750
- Malus domestica: MD11G1019200
- Manihot esculenta: Manes.07G033300, Manes.07G033000, MANES_12G131900
- Triticum aestivum: TaUGT12887
Sequences
cDNA Sequence
- >LOC_Os05g47950.1
GAACTAGCAAGTAAACCTGCGGTGTTTCCAACACAACAAACGCTACAACCCTTGTAGGTTTCAGAGGAAAACACACGACACGAGCCGGAGGCAACAAGGCGCTCAGGTCCATGGAGCCTCACGTCCTCCTCGTGTCCTTCCCTATGCAGGGCCACGTCAACCCGCTCCTCCGCCTCGGCCGCCGCCTCGCCGCCACGGGCCTCCTCGTCACCTTCACCACCGTCCGCCTCGCCGCCGGCGGCGGCCGCCTCCGCGACGTGCCGGAGGACGGCGCGTGCGCCGACGTCGGGCTCGGCCGCCTGCGCTTCGAGTACCTGCGCGACGACGACGACGACGGCGACGAGCGGTGCCAGCAGCTGGCGCCCAACGACGTGCTGTCGCACGTCACGGCCGTGGGGCCATCGGCGCTCGCCGAGTTCATCGACGGCCAGGCCGACGCCGGCCGGCCGGTGACGTTCGTCGTGAACAACATCTTCGTGCCGTGGGCGCTCGACGTCGCCGCCGGGATGGGCATCCCGTGCGCCATGCTGTGGATCCAGCCGTGCTCCGTGCTGTCGATATACTACCACTTCTACGAGTCGCCCGAGGCGTTCCCTACCGCCGCCGACCCCGACGTGCCGGTCGAGCTCCCCGGCTTGCCGGTGATGGCCATGGTCGAGCTGCCTTTCATGGTTCGTCCCGAGTACGCGCAGTGCCTGTGGGGCGACACGCTCCGGGCGCAGGTCGGGGCGATCAAGAGGACGGTGTCCTGGGTGCTCGTCAACTCGTTCTACGAGCTCGAGCGCTCGGCCGTCGACGCGCTCCGCGCGCACACGACGGTCAAGCTCGCGCCCATCGGCCCTCTCCTGGAGCATGGCCATGACAACGGCGGCGGCGACGACGGCGCGCCGGCGCCGGCGCTAGGGGCCGAGGACAACGACCGCTGCGTGGCGTGGCTCGACGCGCAGCCGCCGCGCTCCGTGGTGTACGTGGCGTTCGGCAGCCTCGTGAACATCGGCCGCGACGAGACGGCGGCGGTGGCGGAGGGGCTCGTCGCCACCGGCAGGCCGTTCCTGTGGGTGGTGCGCGACGACAGCCGCGACCTCGTGCCGGAGGCCGTCCTCGCGGCGTGCCGCGGCGACAAGGCCGGCAAGATCACGGCGTGGTGCCCGCAGGGGCGCGTGCTCGCCCACGGCGCCGTCGGCTGCTTCGTGACGCACTGCGGGTGGAACTCCATCATGGAGGCGCTCGCCGCGGGCGTGCCGGTGGTCGGGTACCCGTGGTGGTCCGACCAGTTCGCGAACGCCAAGTTCTTGGTGGAGGACTACAAGGTCGGCGTCCGGCTACCGGCGCCGGTGACCGGCGGCGAGCTCCGAGCGTGCGTCGACCGCGTGATGAGCGGGCCGGAGGCGGCGGTGATCCGGAAGAGGGCGATGCATTGGAAGCGAGAAGCGGCGGCGGCGGTTGCCGACGGCGGTTCGTCGGATCGGAGCCTCCAGGATTTTGTCGACCATGTACGACGTTCCAAAGGACCGGAGGAGCTAGCTCGATTAGCTCAAGACATCCAGATTATGAATGGGCCGGTCAATCCGGTCCTAGTTTAATAAATCTAGCACAGCCCATGTACGGTCATGTGGGGGCTATGACGCTATGTAGTGTGTTAATCTATCTACTCCATTAAGTTGCTGTCGAGTCTAATCCTTGTTATCATAGGATTCCAAGGCTTACATAAAAAAACGGTGTAAAAAATGTAAGTTTGAAGTTTGAACACTCCAAGTCAAACACGATTACATCGTATTATACGAATTCAATTTCGTAAATCACAACAGATCATATAAAAATTGGGAGGTCGCTGTACCACAAGA
CDS Sequence
- >LOC_Os05g47950.1
ATGGAGCCTCACGTCCTCCTCGTGTCCTTCCCTATGCAGGGCCACGTCAACCCGCTCCTCCGCCTCGGCCGCCGCCTCGCCGCCACGGGCCTCCTCGTCACCTTCACCACCGTCCGCCTCGCCGCCGGCGGCGGCCGCCTCCGCGACGTGCCGGAGGACGGCGCGTGCGCCGACGTCGGGCTCGGCCGCCTGCGCTTCGAGTACCTGCGCGACGACGACGACGACGGCGACGAGCGGTGCCAGCAGCTGGCGCCCAACGACGTGCTGTCGCACGTCACGGCCGTGGGGCCATCGGCGCTCGCCGAGTTCATCGACGGCCAGGCCGACGCCGGCCGGCCGGTGACGTTCGTCGTGAACAACATCTTCGTGCCGTGGGCGCTCGACGTCGCCGCCGGGATGGGCATCCCGTGCGCCATGCTGTGGATCCAGCCGTGCTCCGTGCTGTCGATATACTACCACTTCTACGAGTCGCCCGAGGCGTTCCCTACCGCCGCCGACCCCGACGTGCCGGTCGAGCTCCCCGGCTTGCCGGTGATGGCCATGGTCGAGCTGCCTTTCATGGTTCGTCCCGAGTACGCGCAGTGCCTGTGGGGCGACACGCTCCGGGCGCAGGTCGGGGCGATCAAGAGGACGGTGTCCTGGGTGCTCGTCAACTCGTTCTACGAGCTCGAGCGCTCGGCCGTCGACGCGCTCCGCGCGCACACGACGGTCAAGCTCGCGCCCATCGGCCCTCTCCTGGAGCATGGCCATGACAACGGCGGCGGCGACGACGGCGCGCCGGCGCCGGCGCTAGGGGCCGAGGACAACGACCGCTGCGTGGCGTGGCTCGACGCGCAGCCGCCGCGCTCCGTGGTGTACGTGGCGTTCGGCAGCCTCGTGAACATCGGCCGCGACGAGACGGCGGCGGTGGCGGAGGGGCTCGTCGCCACCGGCAGGCCGTTCCTGTGGGTGGTGCGCGACGACAGCCGCGACCTCGTGCCGGAGGCCGTCCTCGCGGCGTGCCGCGGCGACAAGGCCGGCAAGATCACGGCGTGGTGCCCGCAGGGGCGCGTGCTCGCCCACGGCGCCGTCGGCTGCTTCGTGACGCACTGCGGGTGGAACTCCATCATGGAGGCGCTCGCCGCGGGCGTGCCGGTGGTCGGGTACCCGTGGTGGTCCGACCAGTTCGCGAACGCCAAGTTCTTGGTGGAGGACTACAAGGTCGGCGTCCGGCTACCGGCGCCGGTGACCGGCGGCGAGCTCCGAGCGTGCGTCGACCGCGTGATGAGCGGGCCGGAGGCGGCGGTGATCCGGAAGAGGGCGATGCATTGGAAGCGAGAAGCGGCGGCGGCGGTTGCCGACGGCGGTTCGTCGGATCGGAGCCTCCAGGATTTTGTCGACCATGTACGACGTTCCAAAGGACCGGAGGAGCTAGCTCGATTAGCTCAAGACATCCAGATTATGAATGGGCCGGTCAATCCGGTCCTAGTTTAA
Protein Sequence
- >LOC_Os05g47950.1
MEPHVLLVSFPMQGHVNPLLRLGRRLAATGLLVTFTTVRLAAGGGRLRDVPEDGACADVGLGRLRFEYLRDDDDDGDERCQQLAPNDVLSHVTAVGPSALAEFIDGQADAGRPVTFVVNNIFVPWALDVAAGMGIPCAMLWIQPCSVLSIYYHFYESPEAFPTAADPDVPVELPGLPVMAMVELPFMVRPEYAQCLWGDTLRAQVGAIKRTVSWVLVNSFYELERSAVDALRAHTTVKLAPIGPLLEHGHDNGGGDDGAPAPALGAEDNDRCVAWLDAQPPRSVVYVAFGSLVNIGRDETAAVAEGLVATGRPFLWVVRDDSRDLVPEAVLAACRGDKAGKITAWCPQGRVLAHGAVGCFVTHCGWNSIMEALAAGVPVVGYPWWSDQFANAKFLVEDYKVGVRLPAPVTGGELRACVDRVMSGPEAAVIRKRAMHWKREAAAAVADGGSSDRSLQDFVDHVRRSKGPEELARLAQDIQIMNGPVNPVLV*