Information report for EDR1
Gene Details
|
|
Functional Descriptions
- Here, we cloned the UDP-glucosyltransferase gene EDR1 (Endosperm Development in Rice) responsible for differential endosperm development between upland rice and paddy rice by performing QTL analysis and map-based cloning.
- Natural variations in EDR1 significantly reduced the UDP-glucosyltransferase activity of EDR1(YZN) compared to EDR1(YD1) , resulting in abnormal endosperm development in the near-isogenic line (NIL), accompanied by insufficient grains and changes in grain quality.
- Taken together, these results suggest that the UDP-glucosyltransferase gene EDR1 is an important determinant controlling differential endosperm development between upland rice and paddy rice.
- EDR1 was highly expressed in developing seeds during grain filling.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q6AUC5
- EMBL: AK108674
- AlphaFoldDB: Q6AUC5
- EnsemblPlants: Os05t0552700-01
- Gramene: Os05t0552700-01
- KEGG: osa:4339543
- InterPro: IPR002213, IPR035595
- PANTHER: PTHR11926, PTHR11926:SF709
- SUPFAM: SSF53756
- PROSITE: PS00375
- Gene3D: 3.40.50.2000
- OrthoDB: Q6AUC5
- SWISS-MODEL: Q6AUC5
- Conserved Domain Database: cd03784
Sequences
cDNA Sequence
- >LOC_Os05g47950.1
GAACTAGCAAGTAAACCTGCGGTGTTTCCAACACAACAAACGCTACAACCCTTGTAGGTTTCAGAGGAAAACACACGACACGAGCCGGAGGCAACAAGGCGCTCAGGTCCATGGAGCCTCACGTCCTCCTCGTGTCCTTCCCTATGCAGGGCCACGTCAACCCGCTCCTCCGCCTCGGCCGCCGCCTCGCCGCCACGGGCCTCCTCGTCACCTTCACCACCGTCCGCCTCGCCGCCGGCGGCGGCCGCCTCCGCGACGTGCCGGAGGACGGCGCGTGCGCCGACGTCGGGCTCGGCCGCCTGCGCTTCGAGTACCTGCGCGACGACGACGACGACGGCGACGAGCGGTGCCAGCAGCTGGCGCCCAACGACGTGCTGTCGCACGTCACGGCCGTGGGGCCATCGGCGCTCGCCGAGTTCATCGACGGCCAGGCCGACGCCGGCCGGCCGGTGACGTTCGTCGTGAACAACATCTTCGTGCCGTGGGCGCTCGACGTCGCCGCCGGGATGGGCATCCCGTGCGCCATGCTGTGGATCCAGCCGTGCTCCGTGCTGTCGATATACTACCACTTCTACGAGTCGCCCGAGGCGTTCCCTACCGCCGCCGACCCCGACGTGCCGGTCGAGCTCCCCGGCTTGCCGGTGATGGCCATGGTCGAGCTGCCTTTCATGGTTCGTCCCGAGTACGCGCAGTGCCTGTGGGGCGACACGCTCCGGGCGCAGGTCGGGGCGATCAAGAGGACGGTGTCCTGGGTGCTCGTCAACTCGTTCTACGAGCTCGAGCGCTCGGCCGTCGACGCGCTCCGCGCGCACACGACGGTCAAGCTCGCGCCCATCGGCCCTCTCCTGGAGCATGGCCATGACAACGGCGGCGGCGACGACGGCGCGCCGGCGCCGGCGCTAGGGGCCGAGGACAACGACCGCTGCGTGGCGTGGCTCGACGCGCAGCCGCCGCGCTCCGTGGTGTACGTGGCGTTCGGCAGCCTCGTGAACATCGGCCGCGACGAGACGGCGGCGGTGGCGGAGGGGCTCGTCGCCACCGGCAGGCCGTTCCTGTGGGTGGTGCGCGACGACAGCCGCGACCTCGTGCCGGAGGCCGTCCTCGCGGCGTGCCGCGGCGACAAGGCCGGCAAGATCACGGCGTGGTGCCCGCAGGGGCGCGTGCTCGCCCACGGCGCCGTCGGCTGCTTCGTGACGCACTGCGGGTGGAACTCCATCATGGAGGCGCTCGCCGCGGGCGTGCCGGTGGTCGGGTACCCGTGGTGGTCCGACCAGTTCGCGAACGCCAAGTTCTTGGTGGAGGACTACAAGGTCGGCGTCCGGCTACCGGCGCCGGTGACCGGCGGCGAGCTCCGAGCGTGCGTCGACCGCGTGATGAGCGGGCCGGAGGCGGCGGTGATCCGGAAGAGGGCGATGCATTGGAAGCGAGAAGCGGCGGCGGCGGTTGCCGACGGCGGTTCGTCGGATCGGAGCCTCCAGGATTTTGTCGACCATGTACGACGTTCCAAAGGACCGGAGGAGCTAGCTCGATTAGCTCAAGACATCCAGATTATGAATGGGCCGGTCAATCCGGTCCTAGTTTAATAAATCTAGCACAGCCCATGTACGGTCATGTGGGGGCTATGACGCTATGTAGTGTGTTAATCTATCTACTCCATTAAGTTGCTGTCGAGTCTAATCCTTGTTATCATAGGATTCCAAGGCTTACATAAAAAAACGGTGTAAAAAATGTAAGTTTGAAGTTTGAACACTCCAAGTCAAACACGATTACATCGTATTATACGAATTCAATTTCGTAAATCACAACAGATCATATAAAAATTGGGAGGTCGCTGTACCACAAGA
CDS Sequence
- >LOC_Os05g47950.1
ATGGAGCCTCACGTCCTCCTCGTGTCCTTCCCTATGCAGGGCCACGTCAACCCGCTCCTCCGCCTCGGCCGCCGCCTCGCCGCCACGGGCCTCCTCGTCACCTTCACCACCGTCCGCCTCGCCGCCGGCGGCGGCCGCCTCCGCGACGTGCCGGAGGACGGCGCGTGCGCCGACGTCGGGCTCGGCCGCCTGCGCTTCGAGTACCTGCGCGACGACGACGACGACGGCGACGAGCGGTGCCAGCAGCTGGCGCCCAACGACGTGCTGTCGCACGTCACGGCCGTGGGGCCATCGGCGCTCGCCGAGTTCATCGACGGCCAGGCCGACGCCGGCCGGCCGGTGACGTTCGTCGTGAACAACATCTTCGTGCCGTGGGCGCTCGACGTCGCCGCCGGGATGGGCATCCCGTGCGCCATGCTGTGGATCCAGCCGTGCTCCGTGCTGTCGATATACTACCACTTCTACGAGTCGCCCGAGGCGTTCCCTACCGCCGCCGACCCCGACGTGCCGGTCGAGCTCCCCGGCTTGCCGGTGATGGCCATGGTCGAGCTGCCTTTCATGGTTCGTCCCGAGTACGCGCAGTGCCTGTGGGGCGACACGCTCCGGGCGCAGGTCGGGGCGATCAAGAGGACGGTGTCCTGGGTGCTCGTCAACTCGTTCTACGAGCTCGAGCGCTCGGCCGTCGACGCGCTCCGCGCGCACACGACGGTCAAGCTCGCGCCCATCGGCCCTCTCCTGGAGCATGGCCATGACAACGGCGGCGGCGACGACGGCGCGCCGGCGCCGGCGCTAGGGGCCGAGGACAACGACCGCTGCGTGGCGTGGCTCGACGCGCAGCCGCCGCGCTCCGTGGTGTACGTGGCGTTCGGCAGCCTCGTGAACATCGGCCGCGACGAGACGGCGGCGGTGGCGGAGGGGCTCGTCGCCACCGGCAGGCCGTTCCTGTGGGTGGTGCGCGACGACAGCCGCGACCTCGTGCCGGAGGCCGTCCTCGCGGCGTGCCGCGGCGACAAGGCCGGCAAGATCACGGCGTGGTGCCCGCAGGGGCGCGTGCTCGCCCACGGCGCCGTCGGCTGCTTCGTGACGCACTGCGGGTGGAACTCCATCATGGAGGCGCTCGCCGCGGGCGTGCCGGTGGTCGGGTACCCGTGGTGGTCCGACCAGTTCGCGAACGCCAAGTTCTTGGTGGAGGACTACAAGGTCGGCGTCCGGCTACCGGCGCCGGTGACCGGCGGCGAGCTCCGAGCGTGCGTCGACCGCGTGATGAGCGGGCCGGAGGCGGCGGTGATCCGGAAGAGGGCGATGCATTGGAAGCGAGAAGCGGCGGCGGCGGTTGCCGACGGCGGTTCGTCGGATCGGAGCCTCCAGGATTTTGTCGACCATGTACGACGTTCCAAAGGACCGGAGGAGCTAGCTCGATTAGCTCAAGACATCCAGATTATGAATGGGCCGGTCAATCCGGTCCTAGTTTAA
Protein Sequence
- >LOC_Os05g47950.1
MEPHVLLVSFPMQGHVNPLLRLGRRLAATGLLVTFTTVRLAAGGGRLRDVPEDGACADVGLGRLRFEYLRDDDDDGDERCQQLAPNDVLSHVTAVGPSALAEFIDGQADAGRPVTFVVNNIFVPWALDVAAGMGIPCAMLWIQPCSVLSIYYHFYESPEAFPTAADPDVPVELPGLPVMAMVELPFMVRPEYAQCLWGDTLRAQVGAIKRTVSWVLVNSFYELERSAVDALRAHTTVKLAPIGPLLEHGHDNGGGDDGAPAPALGAEDNDRCVAWLDAQPPRSVVYVAFGSLVNIGRDETAAVAEGLVATGRPFLWVVRDDSRDLVPEAVLAACRGDKAGKITAWCPQGRVLAHGAVGCFVTHCGWNSIMEALAAGVPVVGYPWWSDQFANAKFLVEDYKVGVRLPAPVTGGELRACVDRVMSGPEAAVIRKRAMHWKREAAAAVADGGSSDRSLQDFVDHVRRSKGPEELARLAQDIQIMNGPVNPVLV*