Information report for OsPDCD5
Gene Details
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Functional Descriptions
- Here we report that decreased expression of OsPDCD5 caused by antisense technology could induce pollen sterility in photoperiod-sensitive rice.
- Constitutive expression of OsPDCD5 from the cauliflower mosaic virus (CaMV) 35S promoter induced programmed cell death (PCD) in transgenic rice.
- Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice.
- In F1 hybrids made from transgenic plants with antisense-OsPDCD5 and japonica rice varieties, lower transcript inhibition could restore fertility, under certain photoperiod and temperatures.
- OsPDCD5, is an ortholog to mammalian programmed cell death 5 gene.
- ) programmed cell death 5 (OsPDCD5) gene in rice plant.
- Overexpression of the OsPDCD5 gene induces programmed cell death in rice.
- Transcriptome analysis showed that OsPDCD5 knockout affected auxin biosynthesis, as well as the gibberellin and cytokinin biosynthesis and signaling pathways.
- Targeted mutagenesis of OsPDCD5 enhanced grain yield and improved plant architecture by increasing plant height and optimizing panicle type and grain shape.
- OsPDCD5 negatively regulates plant architecture and grain yield in rice.
- OsPDCD5 interacted directly with OsAGAP, and OsAGAP positively regulated plant architecture and grain yield in rice.
- Collectively, these findings demonstrate that OsPDCD5 is a promising candidate gene for breeding super rice cultivars with increased yield potential and superior quality.
Functional Keywords
- pollen , flower , sterility , fertility , temperature , cell-death , auxin , panicle , grain , quality , gibberellin , grain-yield , yield , cytokinin , architecture , breeding , height , plant-height , Gibberellin , plant-architecture , auxin-biosynthesis , grain-shape
Literature and News
- Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice . DOI: 10.1016/j.plantsci.2009.12.001
- Overexpression of the OsPDCD5 Gene Induces Programmed Cell Death in Rice . DOI: 10.1111/j.1744-7909.2005.00128.x
- OsPDCD5 negatively regulates plant architecture and grain yield in rice . DOI: 10.1073/pnas.2018799118 ; PMID: 34266944
Gene Resources
- UniProt: Q6ITC5
- EMBL: AK058330, AK122158, AP014961
- AlphaFoldDB: Q6ITC5
- EnsemblPlants: Os05t0547850-01
- Gramene: Os05t0547850-01
- KEGG: osa:9269971
- Orthologous matrix: MQYEMQK
- InterPro: IPR002836, IPR036883
- PANTHER: PTHR10840, PTHR10840:SF0
- SUPFAM: SSF46950
- Gene3D: 1.10.8.140
- OrthoDB: Q6ITC5
- SWISS-MODEL: Q6ITC5
- eggNOG: KOG3431
Sequences
cDNA Sequence
- >LOC_Os05g47446.1
AGGAGGTCAAGTTCTCTCTCTCTTCCTCTCGTCGCCGGAGGCGGGAGGCCATCGACGCTGAAGTGAAGGGGATCGCGATCTCCGGCGAGCGTGCGGGGGAAGATGGCTGACCCAGAGTTGGAAGCTATCAGGCAGAGGAGAATGCAAGAGCTAATGGCACAGCATGGTGCGGCAAATCCGCAAAATGCTGGGCAACAAAAAGCTCAAGAAGATGCAAAGCAGGAAGCTGAGGAACGGCGGCAGATGATGCTTGCTCAGATTTTATCTTCTGAAGCTAGAGAAAGGCTCTCCCGCATAGCTTTGGTCAAACCTGATAAAGCAAGAGGGGTGGAGGATGTTCTTCTGAGAGCTGCTCAGTCCGGTGGAATATCTGAAAAGGTGTCTGAAGAAAGGCTTATCTCACTTCTGGAGCAAATCAATACCCACACTAGCAAACAGACGAAAGTTACGATTCAGAGGCGCCGGAGCGTCCTTGACGATGATGACTAGCTGCATGTGTGTTGTGTGTACGATGAGCTGGTGGAGGAGTCTGCTGTAGCGCAAAACTACTTAGAAATGATGATTATCAAACGCTATATCAACAACCATCAAAACTTGAGCGACTATTTGATGGATATTTGGCCGTATATGAATTAATTCGAGTTTGGTTTGGCTTGTTCCATTGATGACATTCAAACTTTTGACTGCTCCGAAGGGGAATTGCCACACGTCCGACTGGTATGTACGACTTAGCATCCGACCAGTACTTACCTGCTCCTTGCTCTGGCCCACATGGAGAGCAGCTGGCTCGTTGGAGTAAATTGATTAGCGAACAATAGGGTCGGATGTATAGCAGTACTCGCTCCGAAGTGTGTATCCATCATATCATGAGTATCTTAGTTGCTCCTGTCTGACGTTTTGTCGGTAGATGAATTCCGGTAGCGGAGGCGTCCTGTGTGTATGCTACTAGTATTTTTTAATGTACTTTGGGTGGTATCACAATGACCGTGCCGAAGGTATGCTAGAGATATCATAAGCTACAACAAGGATTGCCGGTAGGCATCCCCAATCGAGTTTCATTCCTAACCAA - >LOC_Os05g47446.2
AGGAGGTCAAGTTCTCTCTCTCTTCCTCTCGTCGCCGGAGGCGGGAGGCCATCGACGCTGAAGTGAAGGGGATCGCGATCTCCGGCGAGCGTGCGGGGGAAGATGGCTGACCCAGAGTTGGAAGCTATCAGGCAGAGGAGAATGCAAGAGCTAATGGCACAGCATGGTGCGGCAAATCCGCAAAATGCTGGGCAACAAAAAGCTCAAGAAGATGCAAAGCAGGAAGCTGAGGAACGGCGGCAGATGATGCTTGCTCAGATTTTATCTTCTGAAGCTAGAGAAAGGCTCTCCCGCATAGCTTTGGTCAAACCTGATAAAGCAAGAGGGGTGGAGGATGTTCTTCTGAGAGCTGCTCAGTCCGGTGGAATATCTGAAAAGGTGTCTGAAGAAAGGCTTATCTCACTTCTGGAGCAAATCAATACCCACACTAGCAAACAGACGAAAGTTACGATTCAGAGGCGCCGGAGCGTCCTTGACGATGATGACTAGCTGCATGTGTGTTGTGTGTACGATGAGCTGGTGGAGGAGTCTGCTGTAGCGCAAAACTACTTAGAAATGATGATTATCAAACGCTATATCAACAACCATCAAAACTTGAGCGACTATTTGATGGATATTTGGCCGTATATGAATTAATTCGAGTTTGGTTTGGCTTGTTCCATTGATGACATTCAAACTTTTGACTGCTCCGAAGGGGAATTGCCACACGTCCGACTGGTATGTACGACTTAGCATCCGACCAGTACTTACCTGCTCCTTGCTCTGGCCCACATGGAGAGCAGCTGGCTCGTTGGAGTAAATTGATTAGCGAACAATAGGGTCGGATGTATAGCAGTACTCGCTCCGAAGTGTGTATCCATCATATCATGAGTATCTTAGTTGCTCCTGTCTGACGTTTTGTCGGTAGATGAATTCCGGTAGCGGAGGCGTCCTGTGTGTATGCTACTAGTATTTTTTAATGTACTTTGGGTGGTATCACAATGACCGTGCCGAAGGTATGCTAGAGATATCATAAGCTACAACAAGGATTGCCGGTAGGCATCCCCAATCGAGTTTCATTCCTAACCAA
CDS Sequence
- >LOC_Os05g47446.1
ATGGCTGACCCAGAGTTGGAAGCTATCAGGCAGAGGAGAATGCAAGAGCTAATGGCACAGCATGGTGCGGCAAATCCGCAAAATGCTGGGCAACAAAAAGCTCAAGAAGATGCAAAGCAGGAAGCTGAGGAACGGCGGCAGATGATGCTTGCTCAGATTTTATCTTCTGAAGCTAGAGAAAGGCTCTCCCGCATAGCTTTGGTCAAACCTGATAAAGCAAGAGGGGTGGAGGATGTTCTTCTGAGAGCTGCTCAGTCCGGTGGAATATCTGAAAAGGTGTCTGAAGAAAGGCTTATCTCACTTCTGGAGCAAATCAATACCCACACTAGCAAACAGACGAAAGTTACGATTCAGAGGCGCCGGAGCGTCCTTGACGATGATGACTAG - >LOC_Os05g47446.2
ATGGCTGACCCAGAGTTGGAAGCTATCAGGCAGAGGAGAATGCAAGAGCTAATGGCACAGCATGGTGCGGCAAATCCGCAAAATGCTGGGCAACAAAAAGCTCAAGAAGATGCAAAGCAGGAAGCTGAGGAACGGCGGCAGATGATGCTTGCTCAGATTTTATCTTCTGAAGCTAGAGAAAGGCTCTCCCGCATAGCTTTGGTCAAACCTGATAAAGCAAGAGGGGTGGAGGATGTTCTTCTGAGAGCTGCTCAGTCCGGTGGAATATCTGAAAAGGTGTCTGAAGAAAGGCTTATCTCACTTCTGGAGCAAATCAATACCCACACTAGCAAACAGACGAAAGTTACGATTCAGAGGCGCCGGAGCGTCCTTGACGATGATGACTAG
Protein Sequence
- >LOC_Os05g47446.1
MADPELEAIRQRRMQELMAQHGAANPQNAGQQKAQEDAKQEAEERRQMMLAQILSSEARERLSRIALVKPDKARGVEDVLLRAAQSGGISEKVSEERLISLLEQINTHTSKQTKVTIQRRRSVLDDDD* - >LOC_Os05g47446.2
MADPELEAIRQRRMQELMAQHGAANPQNAGQQKAQEDAKQEAEERRQMMLAQILSSEARERLSRIALVKPDKARGVEDVLLRAAQSGGISEKVSEERLISLLEQINTHTSKQTKVTIQRRRSVLDDDD*