Information report for RLM1
Gene Details
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Functional Descriptions
- A series of experiments, including the transcription factor-centered technology, DNA-binding assay, and electrophoretic mobility shift assay, verified that RLM1 can bind to the promoter of OsCAD2, a key gene responsible for lignin biosynthesis in rice.
- In particular, RLM1 is exclusively expressed in the stems at the mature plant stage.
- The yield of RLM1 knockdown lines increased by over 11% without other adverse agricultural trait penalties, indicating great practical application value.
- Cytological observations revealed that the RLM1 was mainly caused by abnormal deposition of secondary cell walls.
Functional Keywords
Literature and News
Gene Resources
- UniProt: J9PDC7
- EMBL: AP014961, GU046788
- AlphaFoldDB: J9PDC7
- EnsemblPlants: Os05t0543600-01
- Gramene: Os05t0543600-01
- KEGG: osa:4339490
- Orthologous matrix: DKLYNHI
- InterPro: IPR001005, IPR009057, IPR017930
- PANTHER: PTHR47997, PTHR47997:SF79
- SUPFAM: SSF46689
- PROSITE: PS50090, PS51294
- Gene3D: 1.10.10.60
- OrthoDB: J9PDC7
- SWISS-MODEL: J9PDC7
- Conserved Domain Database: cd00167
- eggNOG: KOG0048
Homologs
- Brachypodium distachyon: Bradi2g47590.1.p
- Panicum virgatum: Pavir.3KG276700.1.p, Pavir.3KG318100.1.p
- Setaria italica: Seita.3G161500.1.p
- Setaria viridis: Sevir.3G164600.1.p
- Zea mays: GRMZM2G119693_P01, GRMZM2G175232_P01
Sequences
cDNA Sequence
- >LOC_Os05g46610.1
ACACCACACAAACACCTATTCTCTCTCTCTAGCTCGCTGTCTCTGTGTCTCTCTCTAACTGAAGTTGCAGGAGTTCTTGGCAAGCTTCCCCATATATACCCGACCACCACCGGGCAACGGTTGATCGATATAGCCAGTGAGGAGAAGGGTTATAGAGGCTGATCGACCATCGATCGACGTCGTGGCGAGCGGCTAGTGTTCGTTGTCGTCGTCGGCGGCGGCGAGGTGGTGGTGGTGGTAGCTACGTAGGTTGTGGACATCGATCTAGAGGTAGAGGCAGGGAGGGGGAGGAATGGGACGGCTGTCGTCGTGCGGCGGCGTGCAGGCGAAGCTGAGGAAGGGGCTTTGGTCTCCCGAGGAAGACGATAAGCTGTACAATCACATCATCCGACATGGCGTCGGCTGCTGGAGCTCCGTCCCCAAGCTCGCAGGGTTGCAGCGATGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTCAGGCCAGACCTGAAGCGCGGGAGCTTCTCGCAGCAGGAGGAGGACCTCATCGTCGCGCTGCACGAGATCCTCGGGAACAGGTGGTCGCAGATCGCGTCGCACTTGCCGGGGAGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTCCGGCAACGCGGCCTCGACCCGGCCACGCACAAGCCCATCGCCGCCGCCGCCGCGGCGGCGACGTCCTCGGAGTCGGCGGTCACCCAGGTGGATGAGGATCACAAGCCCCACGGCGCCGCCGCCGCCGCCGCCGCCGCCGACGGCCTCGCCGCGAACGCCAAGCAGTCGGTGTTCGACCCGTTCCCGGTGACCGACTTCGGCGCCGGCTTCGACCTCGGCGCGGCGAACATGGCGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGGAGCACAAGTTCTCGCTACCATGCCATGAGCAGAGCTTGGCTCAATTCGACTTCAACTTGGAATACTTCTGATCAATTAATTTTTACCACTCCTTTTTTTTACCACACTACAGTATATTCTACACGTACAGGATAAAGAACCATTGGAAGATTAGGATTGTTATTATTATTATTACTACTACTACATGTTAATTTTCTCTAGCCCGGACTCTACTCACACTGTTTCTTTTTTCTTTTTTTTTTTGAGAAAATGTATACTGTTTTTCTGGTTGGTTAGAATAAGAGACATTACTACTATACACACGAGAACATTGTGCACTATAATAATAATATTATTTTTTTTG
CDS Sequence
- >LOC_Os05g46610.1
ATGGGACGGCTGTCGTCGTGCGGCGGCGTGCAGGCGAAGCTGAGGAAGGGGCTTTGGTCTCCCGAGGAAGACGATAAGCTGTACAATCACATCATCCGACATGGCGTCGGCTGCTGGAGCTCCGTCCCCAAGCTCGCAGGGTTGCAGCGATGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTCAGGCCAGACCTGAAGCGCGGGAGCTTCTCGCAGCAGGAGGAGGACCTCATCGTCGCGCTGCACGAGATCCTCGGGAACAGGTGGTCGCAGATCGCGTCGCACTTGCCGGGGAGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTCCGGCAACGCGGCCTCGACCCGGCCACGCACAAGCCCATCGCCGCCGCCGCCGCGGCGGCGACGTCCTCGGAGTCGGCGGTCACCCAGGTGGATGAGGATCACAAGCCCCACGGCGCCGCCGCCGCCGCCGCCGCCGCCGACGGCCTCGCCGCGAACGCCAAGCAGTCGGTGTTCGACCCGTTCCCGGTGACCGACTTCGGCGCCGGCTTCGACCTCGGCGCGGCGAACATGGCGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGGAGCACAAGTTCTCGCTACCATGCCATGAGCAGAGCTTGGCTCAATTCGACTTCAACTTGGAATACTTCTGA
Protein Sequence
- >LOC_Os05g46610.1
MGRLSSCGGVQAKLRKGLWSPEEDDKLYNHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSQQEEDLIVALHEILGNRWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGLDPATHKPIAAAAAAATSSESAVTQVDEDHKPHGAAAAAAAADGLAANAKQSVFDPFPVTDFGAGFDLGAANMAAALYGSHPDDGAGFVADYSSVLDVSENLGYGESSSNSSNWTCAEVSNVLDSEVLNWAASAGADAAAKAEPFADMEQQHSGYGGEYQVEDDATLEHKFSLPCHEQSLAQFDFNLEYF*