Gene Details:
- MSU gene ID: LOC_Os05g46610
- RAPdb gene ID: Os05g0543600
- Gene Symbol: RLM1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- A series of experiments, including the transcription factor-centered technology, DNA-binding assay, and electrophoretic mobility shift assay, verified that RLM1 can bind to the promoter of OsCAD2, a key gene responsible for lignin biosynthesis in rice.
- In particular, RLM1 is exclusively expressed in the stems at the mature plant stage.
- The yield of RLM1 knockdown lines increased by over 11% without other adverse agricultural trait penalties, indicating great practical application value.
- Cytological observations revealed that the RLM1 was mainly caused by abnormal deposition of secondary cell walls.
Function-related keywords:
- transcription-factor , stems , yield , cell-wall , lignin , lignin-biosynthesis , secondary-cell-wall
Literature:
- RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice . DOI: 10.3389/fpls.2022.905111 ; PMID: 35712587
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os05g46610.1
ACACCACACAAACACCTATTCTCTCTCTCTAGCTCGCTGTCTCTGTGTCTCTCTCTAACTGAAGTTGCAGGAGTTCTTGGCAAGCTTCCCCATATATACCCGACCACCACCGGGCAACGGTTGATCGATATAGCCAGTGAGGAGAAGGGTTATAGAGGCTGATCGACCATCGATCGACGTCGTGGCGAGCGGCTAGTGTTCGTTGTCGTCGTCGGCGGCGGCGAGGTGGTGGTGGTGGTAGCTACGTAGGTTGTGGACATCGATCTAGAGGTAGAGGCAGGGAGGGGGAGGAATGGGACGGCTGTCGTCGTGCGGCGGCGTGCAGGCGAAGCTGAGGAAGGGGCTTTGGTCTCCCGAGGAAGACGATAAGCTGTACAATCACATCATCCGACATGGCGTCGGCTGCTGGAGCTCCGTCCCCAAGCTCGCAGGGTTGCAGCGATGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTCAGGCCAGACCTGAAGCGCGGGAGCTTCTCGCAGCAGGAGGAGGACCTCATCGTCGCGCTGCACGAGATCCTCGGGAACAGGTGGTCGCAGATCGCGTCGCACTTGCCGGGGAGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTCCGGCAACGCGGCCTCGACCCGGCCACGCACAAGCCCATCGCCGCCGCCGCCGCGGCGGCGACGTCCTCGGAGTCGGCGGTCACCCAGGTGGATGAGGATCACAAGCCCCACGGCGCCGCCGCCGCCGCCGCCGCCGCCGACGGCCTCGCCGCGAACGCCAAGCAGTCGGTGTTCGACCCGTTCCCGGTGACCGACTTCGGCGCCGGCTTCGACCTCGGCGCGGCGAACATGGCGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGGAGCACAAGTTCTCGCTACCATGCCATGAGCAGAGCTTGGCTCAATTCGACTTCAACTTGGAATACTTCTGATCAATTAATTTTTACCACTCCTTTTTTTTACCACACTACAGTATATTCTACACGTACAGGATAAAGAACCATTGGAAGATTAGGATTGTTATTATTATTATTACTACTACTACATGTTAATTTTCTCTAGCCCGGACTCTACTCACACTGTTTCTTTTTTCTTTTTTTTTTTGAGAAAATGTATACTGTTTTTCTGGTTGGTTAGAATAAGAGACATTACTACTATACACACGAGAACATTGTGCACTATAATAATAATATTATTTTTTTTG
CDS Sequence
- >LOC_Os05g46610.1
ATGGGACGGCTGTCGTCGTGCGGCGGCGTGCAGGCGAAGCTGAGGAAGGGGCTTTGGTCTCCCGAGGAAGACGATAAGCTGTACAATCACATCATCCGACATGGCGTCGGCTGCTGGAGCTCCGTCCCCAAGCTCGCAGGGTTGCAGCGATGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTCAGGCCAGACCTGAAGCGCGGGAGCTTCTCGCAGCAGGAGGAGGACCTCATCGTCGCGCTGCACGAGATCCTCGGGAACAGGTGGTCGCAGATCGCGTCGCACTTGCCGGGGAGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTCCGGCAACGCGGCCTCGACCCGGCCACGCACAAGCCCATCGCCGCCGCCGCCGCGGCGGCGACGTCCTCGGAGTCGGCGGTCACCCAGGTGGATGAGGATCACAAGCCCCACGGCGCCGCCGCCGCCGCCGCCGCCGCCGACGGCCTCGCCGCGAACGCCAAGCAGTCGGTGTTCGACCCGTTCCCGGTGACCGACTTCGGCGCCGGCTTCGACCTCGGCGCGGCGAACATGGCGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGGAGCACAAGTTCTCGCTACCATGCCATGAGCAGAGCTTGGCTCAATTCGACTTCAACTTGGAATACTTCTGA
Protein Sequence
- >LOC_Os05g46610.1
MGRLSSCGGVQAKLRKGLWSPEEDDKLYNHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSQQEEDLIVALHEILGNRWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGLDPATHKPIAAAAAAATSSESAVTQVDEDHKPHGAAAAAAAADGLAANAKQSVFDPFPVTDFGAGFDLGAANMAAALYGSHPDDGAGFVADYSSVLDVSENLGYGESSSNSSNWTCAEVSNVLDSEVLNWAASAGADAAAKAEPFADMEQQHSGYGGEYQVEDDATLEHKFSLPCHEQSLAQFDFNLEYF*