Information report for Fd
Gene Details
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Functional Descriptions
- The root Fd cDNA clone (pFdRR) was 603 bp long which contained 261-bp 5’ region encoding the C-terminal 72 amino acid residues and 342-bp 3’ noncoding region.
- The root Fd gene contained 1091-bp 5’ upstream, 444-bp coding and 294-bp 3’ noncoding regions.
- Homology between the rice root and leaf Fds showed 60%, while the former protein shared much higher identity with other nonphotosynthetic Fds (66~88%).
- Expression of the root Fd gene was induced in response to nitrate and ammonium.
- Southern blot analysis using pFdRR and the rice leaf Fd cDNA (pFdRL) as a DNA probe identified their corresponding genomic Fd DNA.
Literature and News
Gene Resources
- UniProt: Q60DF0
- EMBL: AC137611, AC147462, AP008211
- AlphaFoldDB: Q60DF0
- EnsemblPlants: Os05t0443500-01
- Gramene: Os05t0443500-01
- KEGG: dosa:Os05g0443500
- Orthologous matrix: ATCVSYP
- InterPro: IPR001041, IPR006058, IPR010241
- PANTHER: PTHR43112, PTHR43112:SF11
- SUPFAM: SSF54292
- PROSITE: PS00197, PS51085
- Gene3D: 3.10.20.30
- OrthoDB: Q60DF0
- SWISS-MODEL: Q60DF0
- Conserved Domain Database: cd00207
Sequences
cDNA Sequence
- >LOC_Os05g37140.1
ATCTCACTCGACTCGGCTTGACCCAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGTACGCCTCGGTTGATCCGCCACCTTCTTCTTCTTCTTACTTACCCTCCCTTCTGATCCCCTGTTTCCCCTGGTCATGGCGGCGAGATCTCCGTGTAGGAGTGAGATCGCCGCCTCCTCCTCATGGTGTTTCCTGGTGCGGCGCGCGTGAGAGCTCGGCCCGAGCCCGAGCCCTCTCGCTTTTGCCGTGCCGGATCTGATTCTGTCCGTGCTAGTGTTAGTGTCACGTTTTGGTGTAGACAGTAGACTCATGAAACGAGGAGAGGCTTTTTTGTAGGATGGGTCAACTTTTAGGAACTTGTCCAAAGTTTAACAACTCTCAAGGATGAACTGGGAATAGTGGCGCTGTTATACATTAGGAGTTGGTCTGCGAGAAATTTGGATGGGATTAGTTGCGGATCTTCCATCAGCTAGTGGAGCTTAAAGATACTGATGTGTTGTCCGTACTGAAATGCACTTCTTTGCCTTGGCAAAACCCCAGTCTCCCCCATAAATTTAGTTTTGTTTGCTTAGCTTTACCAAATGCCATCAGCATACATGGTGTAAAATCATATACTTTTGTAACGAACGAATTGTGTTTATTTGCATTTCAACTAGTGCTTTCTTCCTAATTTATCAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAATTGACTTGTCCTTTCTCCACATGCTATTTTGCAAGATGAATCAGAAGTTCAGACATTGTAGAACTTTCTATTTACATACTATGTTCCTGAAGGCTGC - >LOC_Os05g37140.2
ATCTCACTCGACTCGGCTTGACCCAACCCAACCTACCTCGCGATCCCCCCCTCCTCCGCCGCCGTCTCGTCGAGAGAGAGAGAGAGAGAAGGTACGCCTCGGTTGATCCGCCACCTTCTTCTTCTTCTTACTTACCCTCCCTTCTGATCCCCTGTTTCCCCTGGTCATGGCGGCGAGATCTCCGTGTAGGAGTGAGATCGCCGCCTCCTCCTCATGGTGTTTCCTGGTGCGGCGCGCGTGAGAGCTCGGCCCGAGCCCGAGCCCTCTCGCTTTTGCCGTGCCGGATCTGATTCTGTCCGTGCTAGTGTTAGTGTCACGTTTTGGTGTAGACAGTAGACTCATGAAACGAGGAGAGGCTTTTTTGTAGGATGGGTCAACTTTTAGGAACTTGTCCAAAGTTTAACAACTCTCAAGGATGAACTGGGAATAGTGGCGCTGTTATACATTAGGAGTTGGTCTGCGAGAAATTTGGATGGGATTAGTTGCGGATCTTCCATCAGCTAGTGGAGCTTAAAGATACTGATGTGTTGTCCGTACTGAAATGCACTTCTTTGCCTTGGCAAAACCCCAGTCTCCCCCATAAATTTAGTTTTGTTTGCTTAGCTTTACCAAATGCCATCAGCATACATGGTGTAAAATCATATACTTTTGTAACGAACGAATTGTGTTTATTTGCATTTCAACTAGTGCTTTCTTCCTAATTTATCAGGACTATCGAGATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAGGTCGCTCTTTTTATGCTTCTGTGGGCACATTTGCTGATTTCAAAGTGGACTCGCTGTTCAGTTAGTTTTCGCTATCCAAAAAATGGCCATATCTTTGTATTAGTCTTTTGATGGGACCGTGTCATATGAGTTGTGACAATAATTGTCGTAGTCCTGTTCAGCATTTCAAATTGCGTTTGTTCAATTCACAGCAGGTCCAACTTCCAACGATGACATGTTATCAGAAGTTGTGTGTAATGGTATTATTGTGGATCACTTCCAGTAGGAAAAAATTGACTTGTCCTTTCTCCACATGCTATTTTGCAAGATGAATCAGAAGTTCAGACATTGTAGAACTTTCTATTTACATACTATGTTCCTGAAGGCTGC
CDS Sequence
- >LOC_Os05g37140.1
ATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAG - >LOC_Os05g37140.2
ATGGCAACTGCAACTGCTCCGAGATTGTGCTTTCCTAAACCCGGCGCGGCCATTGCTCCGGCGACCAAGAGCCCTTCCTTCATTGGTTACGCAAAGCAAACATTGAACATGTCAGGCCTAAGGATCTCCAACAAGTTCAGGGTGTCCGCGACAGCGGTGCACAAGGTAAAGCTTATAGGCCCGGACGGTGTCGAGCACGAGTTTGAAGCCCCTGAAGATACCTACATTCTCGAGGCCGCTGAAACTGCCGGGGTGGAGCTGCCATTCTCATGCCGTGCTGGATCATGCTCCACATGTGCGGGTAAGATGTCATCGGGAGAAGTTGATCAGTCGGAAGGATCCTTCCTCGACGAGAACCAGATGGGCGAGGGATACGTTCTGACATGCATTTCGTACCCTAAGGCGGATTGCGTCATTCACACCCACAAGGAGGAAGAACTCTACTAG
Protein Sequence
- >LOC_Os05g37140.1
MATATAPRLCFPKPGAAIAPATKSPSFIGYAKQTLNMSGLRISNKFRVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEELY* - >LOC_Os05g37140.2
MATATAPRLCFPKPGAAIAPATKSPSFIGYAKQTLNMSGLRISNKFRVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEELY*