Information report for TCM5
Gene Details
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Functional Descriptions
- In this study, we reported the first rice deg mutant TCM5 (thermo-sensitive chlorophyll-deficient mutant 5) that has an albino phenotype, defective chloroplasts and could not survive after the 4-5 leaf seedling stage when grown at high temperature (32 °C).
- The TCM5 encodes chloroplast-targeted Deg protease protein which is important for chloroplast development and the maintenance of PSII function and its disruption would lead to a defective chloroplast and affected expression levels of genes associated with chloroplast development and photosynthesis at early rice seedling stage under high temperatures.
- The Rice TCM5 Gene Encoding a Novel Deg Protease Protein is Essential for Chloroplast Development under High Temperatures.
- In TCM5 mutants grown at high temperatures, the transcript levels of certain genes associated with chloroplast development especially PSII-associated genes were severely affected, but recovered to normal levels at low temperatures.
- These results showed important role of TCM5 for chloroplast development under high temperatures.
- Map-based cloning showed that TCM5 encoding a chloroplast-targeted Deg protease protein.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q6AT72
- EMBL: AK073199, AP014961
- AlphaFoldDB: Q6AT72
- EnsemblPlants: Os05t0417100-01
- Gramene: Os05t0417100-01
- Orthologous matrix: FRVGECG
- InterPro: IPR001478, IPR001940, IPR009003
- PANTHER: PTHR45980, PTHR45980:SF9
- SUPFAM: SSF50156, SSF50494
- Gene3D: 2.30.42.10, 2.40.10.10, 3.20.190.20
- OrthoDB: Q6AT72
- SWISS-MODEL: Q6AT72
- eggNOG: KOG1320
Sequences
cDNA Sequence
- >LOC_Os05g34460.1
GACCGCCTCCTGCCCCGCGCCGCGCCGCGCCGCTTCTTCCGGCGAGGCCGCCCCGCCACCACCATGCTCGCCTCCGTCCGCTCTCTCCGCCGCCTCTCCTCCTCCTCCTCGTCCTCGTCCTTGTCCCCCGCCTCGCTACGCCGCCTCCTCCTCCTCCTCCACCGCCCGCCGCCTCCGCCCCCGCCCCCTCGGCCTCCTCTCCCGCCCTTCCAAACCCTAGCCCGAGGCATCCTGCCGCGCATCGCGGCGCGGCCTGTGCCCCGCCGCTTCTCCACCGCGTCCTGCTCCTCCACGCTCTTCCGCGTGGGGGAATGCGGCGCCCCCGGCGCCACCGCCATACCCGAGGCGGAGCGAGGCGAGGAGGAGGAGCGTGAGGGGGAGGATGGAGGCGAGGCCGACGCGGCGGTGGAGGTGGCGGCGGGGAGGCATGACACGGACGCGTACGCGGCGGTGGAGCTGGCGCTGGACTCGGTGGTGAAGGTTTTCACGGTGTCCAGTAGCCCCAACTACTTCCTGCCGTGGCAGAACAAGGCGCAGCGCGAGAGCATGGGCTCAGGATTTGTAATTCCGGGGAGGAGAATCATCACAAATGCTCATGTTATAGCGGATCATACCTTTGTTCTCGTGAGGAAGCATGGGTCGCCTACTAAGTACAAGGCAGAAGTCCAGGCTGTTGGCCATGAGTGCGACTTGGCTCTTCTGAAAGTTGATAGTGAGGAGTTTTGGGATGGAATGAACAGTTTGGAGCTTGGAGACATTCCCTTCTTGCAGGAAGCAGTTGCTGTGGTTGGCTACCCGCAAGGGGGGGACAACATTTCTGTCACCAAGGGTGTGGTCTCTAGAGTTGAGCCAACACAATATGCACATGGTGCTACTCAGCTCATGGCCATACAAATAGATGCGGCTATCAACCCAGGAAACAGCGGAGGGCCTGCAATTATGGGCGACAAAGTTGCTGGAGTTGCTTTTCAAAATTTATCAGGGGCAGAAAACATTGGGTATATTATACCGGTGCCTGTAATTAAACGTTTCATCTCTGGAGTGGAAGAGAGCGGTAAATATTCTGGTTTTTGTACCCTTGGAATATCTTGCCAGGCCACAGAGAATATTCAATTAAGAGAGTGCTTTGGGATGAAGCCTGATTTGACTGGAGTGTTAGTGAGTAGAATAAATCCTCTATCTGATGCTCACAGAGTTCTTAAGAAAGATGACATTCTTCTTGAGTTTGACGGTGTGCCTATAGCAAATGATGGCACAGTCCCATTTCGAAATAGGGAGAGAATCACCTTCGATCATCTGGTGTCCATGAAGAAGCCTGGGGAAATGGCGGTTCTCAAAGTTCTAAGAGATGGCAAAGAGCATGAATTGAATGTCACTGTTAGACCTTTGCAACCTTTAGTCCCTGTACATCAATTTGATAAACTACCCAGCTACTACATCTTTGCTGGTTTTGTTTTCATCCCACTGACCCAGCCTTATCTCCATGAATTTGGAGAAGACTGGTACAACAATTCGCCACGCCGACTGTGTGAACGGGCACTGAGAGAGCTTCCAAAAAAAGCTGCTGAACAACTAGTTATCCTATCTCAGGTTCTCATGGATGATATTAATGTTGGTTATGAAAGGCTCGCTGAACTACAGGTAAAAAAGGTGAACGGTGTGGAAGTAGAAAATCTGAAGCATCTGTGCAGCCTTGTGGAAAGCTGCACTGAAGAAAACCTGAGATTTGATCTGGACGATGAGCGGGTGATCGTCCTGAAATATCAGAACGCAAAGCTCGCCACGTCCCGGATCTTAAAACGGCACAGGATACCGTCGGCCATATCTGCTGACCTCGTCGACGAACAGGCGACTGACGACGGTGAGGAGGCGACTAATGGTGAGATCGAGGCATCATGCACTAGCTAACATTGTTTTGCATACTTAGCTAGGCAATTACCTGCGGAAGAATAGATAGATATTAGCACGGTTCAATTTCCAGAGACAGACGCAGTGAGGCGAGGACTGCCCGGAGCACTGCGCTGGTTGCAGCGGCTCCTGTTCGGCCGTCTCAGTTTTGACGTGAGGGGTGGGTGCTCCGGTTTCCCTCAGCAAATAAGAAGTGAAGAACCCAAGTTCTTCAGCCTCATGATATGTTGTAACACAAATTATCTTCCCCATTTCTTCCCAATATTTCTCATTCTTTCACCAAAAGTGCCGTGGCACAGTCACCTCATATTGAACTCAGATTATATATATCATCACGAAACAGAGCATATGAAACAGGAGTTACAAAGTTTACAGCTCGATGAAAATCCACAATAAGTTTCTTATGTACTTTCTTGGTAAATTATCACCCTTGCTGTTAATCCCTCCATTTCATATTAT
CDS Sequence
- >LOC_Os05g34460.1
ATGCTCGCCTCCGTCCGCTCTCTCCGCCGCCTCTCCTCCTCCTCCTCGTCCTCGTCCTTGTCCCCCGCCTCGCTACGCCGCCTCCTCCTCCTCCTCCACCGCCCGCCGCCTCCGCCCCCGCCCCCTCGGCCTCCTCTCCCGCCCTTCCAAACCCTAGCCCGAGGCATCCTGCCGCGCATCGCGGCGCGGCCTGTGCCCCGCCGCTTCTCCACCGCGTCCTGCTCCTCCACGCTCTTCCGCGTGGGGGAATGCGGCGCCCCCGGCGCCACCGCCATACCCGAGGCGGAGCGAGGCGAGGAGGAGGAGCGTGAGGGGGAGGATGGAGGCGAGGCCGACGCGGCGGTGGAGGTGGCGGCGGGGAGGCATGACACGGACGCGTACGCGGCGGTGGAGCTGGCGCTGGACTCGGTGGTGAAGGTTTTCACGGTGTCCAGTAGCCCCAACTACTTCCTGCCGTGGCAGAACAAGGCGCAGCGCGAGAGCATGGGCTCAGGATTTGTAATTCCGGGGAGGAGAATCATCACAAATGCTCATGTTATAGCGGATCATACCTTTGTTCTCGTGAGGAAGCATGGGTCGCCTACTAAGTACAAGGCAGAAGTCCAGGCTGTTGGCCATGAGTGCGACTTGGCTCTTCTGAAAGTTGATAGTGAGGAGTTTTGGGATGGAATGAACAGTTTGGAGCTTGGAGACATTCCCTTCTTGCAGGAAGCAGTTGCTGTGGTTGGCTACCCGCAAGGGGGGGACAACATTTCTGTCACCAAGGGTGTGGTCTCTAGAGTTGAGCCAACACAATATGCACATGGTGCTACTCAGCTCATGGCCATACAAATAGATGCGGCTATCAACCCAGGAAACAGCGGAGGGCCTGCAATTATGGGCGACAAAGTTGCTGGAGTTGCTTTTCAAAATTTATCAGGGGCAGAAAACATTGGGTATATTATACCGGTGCCTGTAATTAAACGTTTCATCTCTGGAGTGGAAGAGAGCGGTAAATATTCTGGTTTTTGTACCCTTGGAATATCTTGCCAGGCCACAGAGAATATTCAATTAAGAGAGTGCTTTGGGATGAAGCCTGATTTGACTGGAGTGTTAGTGAGTAGAATAAATCCTCTATCTGATGCTCACAGAGTTCTTAAGAAAGATGACATTCTTCTTGAGTTTGACGGTGTGCCTATAGCAAATGATGGCACAGTCCCATTTCGAAATAGGGAGAGAATCACCTTCGATCATCTGGTGTCCATGAAGAAGCCTGGGGAAATGGCGGTTCTCAAAGTTCTAAGAGATGGCAAAGAGCATGAATTGAATGTCACTGTTAGACCTTTGCAACCTTTAGTCCCTGTACATCAATTTGATAAACTACCCAGCTACTACATCTTTGCTGGTTTTGTTTTCATCCCACTGACCCAGCCTTATCTCCATGAATTTGGAGAAGACTGGTACAACAATTCGCCACGCCGACTGTGTGAACGGGCACTGAGAGAGCTTCCAAAAAAAGCTGCTGAACAACTAGTTATCCTATCTCAGGTTCTCATGGATGATATTAATGTTGGTTATGAAAGGCTCGCTGAACTACAGGTAAAAAAGGTGAACGGTGTGGAAGTAGAAAATCTGAAGCATCTGTGCAGCCTTGTGGAAAGCTGCACTGAAGAAAACCTGAGATTTGATCTGGACGATGAGCGGGTGATCGTCCTGAAATATCAGAACGCAAAGCTCGCCACGTCCCGGATCTTAAAACGGCACAGGATACCGTCGGCCATATCTGCTGACCTCGTCGACGAACAGGCGACTGACGACGGTGAGGAGGCGACTAATGGTGAGATCGAGGCATCATGCACTAGCTAA
Protein Sequence
- >LOC_Os05g34460.1
MLASVRSLRRLSSSSSSSSLSPASLRRLLLLLHRPPPPPPPPRPPLPPFQTLARGILPRIAARPVPRRFSTASCSSTLFRVGECGAPGATAIPEAERGEEEEREGEDGGEADAAVEVAAGRHDTDAYAAVELALDSVVKVFTVSSSPNYFLPWQNKAQRESMGSGFVIPGRRIITNAHVIADHTFVLVRKHGSPTKYKAEVQAVGHECDLALLKVDSEEFWDGMNSLELGDIPFLQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYAHGATQLMAIQIDAAINPGNSGGPAIMGDKVAGVAFQNLSGAENIGYIIPVPVIKRFISGVEESGKYSGFCTLGISCQATENIQLRECFGMKPDLTGVLVSRINPLSDAHRVLKKDDILLEFDGVPIANDGTVPFRNRERITFDHLVSMKKPGEMAVLKVLRDGKEHELNVTVRPLQPLVPVHQFDKLPSYYIFAGFVFIPLTQPYLHEFGEDWYNNSPRRLCERALRELPKKAAEQLVILSQVLMDDINVGYERLAELQVKKVNGVEVENLKHLCSLVESCTEENLRFDLDDERVIVLKYQNAKLATSRILKRHRIPSAISADLVDEQATDDGEEATNGEIEASCTS*