Information report for OsXIP
Gene Details
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Functional Descriptions
- Analysis using an OsXIP-specific antibody revealed that OsXIP is markedly accumulated in apoplast in rice root cells by wounding.
- The transcripts of OsXIP and riceXIP were undetectable under normal conditions, and were drastically induced by wounding and methyl jasmonate (MeJA) treatment in the root.
- These results reinforced the possibility that OsXIP is involved in plant defense mechanisms against phytopathogens.
- Although the OsXIP gene was specifically expressed in mature grains under basal conditions, recombinant OsXIP had no effect on rice endogenous xylanases, and OsXIP-suppressed transgenic rice plants did not exhibit any change in grain development and germination, suggesting that rice development may be independent of OsXIP.
- RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice.
Literature and News
- Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice . DOI: 10.1093/pcp/pcm038 ; PMID: 17379695
- RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice . DOI: 10.1093/pcp/pcn080 ; PMID: 18511458
- Experimental and in silico studies of competitive inhibition of family GH10 Aspergillus fumigatus xylanase A by Oryza sativa xylanase inhibitor protein . DOI: 10.1016/j.ijbiomac.2021.10.201 ; PMID: 34742846
Gene Resources
- UniProt: Q5WMW5
- EMBL: AC104270, AK073843, AP008211
- AlphaFoldDB: Q5WMW5
- EnsemblPlants: Os05t0247800-01
- Gramene: Os05t0247800-01
- KEGG: dosa:Os05g0247800, osa:4338211
- Orthologous matrix: RNEACCL
- InterPro: IPR001223, IPR017853, IPR045321
- PANTHER: PTHR45708, PTHR45708:SF11
- SUPFAM: SSF51445
- PROSITE: PS51910
- Gene3D: 3.20.20.80
- OrthoDB: Q5WMW5
- SWISS-MODEL: Q5WMW5
- Conserved Domain Database: cd02877
- eggNOG: KOG4701
Homologs
- Brachypodium distachyon: Bradi2g47171
- Lupinus albus: Lalb_Chr14g0373361
- Nicotiana attenuata: A4A49_14007
- Zea mays: Zm00001d049727
Sequences
cDNA Sequence
- >LOC_Os05g15880.1
CACACCTCGATCAGTAGCTCCATCGTAAGATCGATTCGACCAACATATCAACAATGGCGCTTCGACGCCTCGCGGCACTTCTCTCCTTGGCAGTACTACTGTCCGCCGGCCTCGCCGCCGTGTCGGCGACGTCCCAGAACACCGGCGACACCGTGATCATCTGGGGCCGGAACAAGGACGAGGGCTCCCTCAGGGAGGCCTGCGACGCCGGCCGCTATACCACCGTCATCATCTCCTTCCTCAGCGCCTTCGGCTACATCCCGGGCACCTACAAGCTCGACATCTCCGGCCACCAGGTCTCCGCCGTCGGCCCCGACATCAAGTACTGCCAGTCCAAGGGTAAACTCATCCTCCTCGCCATCGGCGGCCAGGGCGGCGAGTACTCCCTCCCGTCCTCCCAGGCGGCCGTCGATCTGCACGACCACCTCTGGTACTCCTACCTCGGCGGCCGCCGCAATGGCGTCTACCGCCCGTTCGGCGACGCCAACGTGAACGGCATCGACTTCTTCATCGACCAGGGCGCGAGGGAGCACTACAACGAGCTGGCCAAGATGCTCTACGACCACAACAAGGACTACCGCGCCACGGTCGGCGTGATGGTGACGGCGACGACGCGGTGCGGCTACCCGGACCACCGGCTGGACGAGGCGCTGGCGACGGGGCTCTTCCACCGCATCCACGTCAAGATGTTCAGCGACGGCCGGTGCCCGGCATGGTCCAGGAGGCAGTCGTTCGAGAAGTGGGCAAAGACGTACCCGCAGAGCCGTGTCCTGATCGGCGTCGTGGCCTCGCCGGACGTGGACAAGGACGCCTACATGCCGCCGGAGGCCCTCAACAACCTGCTGCAGTTCATCAACAAGCAGCCCAACTTCGGAGGCGTCATGGTTTGGGACAGGTTCTACGACAAGAAGACCGGCTTCACGGCTCACCTGTGAGTGTGTGACTGGTCGTGACATTTGAAGACCATTAATTCCTTAATATTGGATCAATAAAAGCTTTGTGTGCAGTACTTGTGTACTACACAAATAAAGTCATGTAATGAAAATAAACATATATTGTGTCTGCTATAAAGATTTGTATGTTGGGTAATGTATGTAATCAATAAATAAAGCGAGGTACGGTACCTCGGGTGAAATAATAAAGAGCTTTGAGATAAATAAAACT
CDS Sequence
- >LOC_Os05g15880.1
ATGGCGCTTCGACGCCTCGCGGCACTTCTCTCCTTGGCAGTACTACTGTCCGCCGGCCTCGCCGCCGTGTCGGCGACGTCCCAGAACACCGGCGACACCGTGATCATCTGGGGCCGGAACAAGGACGAGGGCTCCCTCAGGGAGGCCTGCGACGCCGGCCGCTATACCACCGTCATCATCTCCTTCCTCAGCGCCTTCGGCTACATCCCGGGCACCTACAAGCTCGACATCTCCGGCCACCAGGTCTCCGCCGTCGGCCCCGACATCAAGTACTGCCAGTCCAAGGGTAAACTCATCCTCCTCGCCATCGGCGGCCAGGGCGGCGAGTACTCCCTCCCGTCCTCCCAGGCGGCCGTCGATCTGCACGACCACCTCTGGTACTCCTACCTCGGCGGCCGCCGCAATGGCGTCTACCGCCCGTTCGGCGACGCCAACGTGAACGGCATCGACTTCTTCATCGACCAGGGCGCGAGGGAGCACTACAACGAGCTGGCCAAGATGCTCTACGACCACAACAAGGACTACCGCGCCACGGTCGGCGTGATGGTGACGGCGACGACGCGGTGCGGCTACCCGGACCACCGGCTGGACGAGGCGCTGGCGACGGGGCTCTTCCACCGCATCCACGTCAAGATGTTCAGCGACGGCCGGTGCCCGGCATGGTCCAGGAGGCAGTCGTTCGAGAAGTGGGCAAAGACGTACCCGCAGAGCCGTGTCCTGATCGGCGTCGTGGCCTCGCCGGACGTGGACAAGGACGCCTACATGCCGCCGGAGGCCCTCAACAACCTGCTGCAGTTCATCAACAAGCAGCCCAACTTCGGAGGCGTCATGGTTTGGGACAGGTTCTACGACAAGAAGACCGGCTTCACGGCTCACCTGTGA
Protein Sequence
- >LOC_Os05g15880.1
MALRRLAALLSLAVLLSAGLAAVSATSQNTGDTVIIWGRNKDEGSLREACDAGRYTTVIISFLSAFGYIPGTYKLDISGHQVSAVGPDIKYCQSKGKLILLAIGGQGGEYSLPSSQAAVDLHDHLWYSYLGGRRNGVYRPFGDANVNGIDFFIDQGAREHYNELAKMLYDHNKDYRATVGVMVTATTRCGYPDHRLDEALATGLFHRIHVKMFSDGRCPAWSRRQSFEKWAKTYPQSRVLIGVVASPDVDKDAYMPPEALNNLLQFINKQPNFGGVMVWDRFYDKKTGFTAHL*