Gene Details:

Functional Descriptions:

  • Here we show that the domestication-related POLLEN TUBE BLOCKED 1 (PTB1), a RING-type E3 ubiquitin ligase, positively regulates the rice panicle seed setting rate by promoting pollen tube growth.
  • Our results support the hypothesis that PTB1 is an important maternal sporophytic factor of pollen tube growth and a key modulator of the rice panicle seed setting rate.
  • Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth.
  • The natural variation in expression of PTB1 which is affected by the promoter haplotype and the environmental temperature, correlates with the rice panicle seed setting rate.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >LOC_Os05g05280.1
    GCTGAAAAGCTTCTTCGCTTCGCCGCCTCCTCCCCCTCTCTCCGGCGCGTTCGCCGCTCGCGATCCTCCCGGCGCCGCCGCCGCCGCCGCGCGGGGGCCCTACTCGCGTCGACGCCGGGAGGGGGACGCCGTACTCCCTCCTCCTCGCGTCGCCCCGCCCCGCCGCCGAGTGCGACGCCGCTCTCTCTCTCTCTCTCCTCGCGAGAAACCCTAGCTGGAGTTGAAGTGAGGGGCTCACTGAAGTGAGCGGAGTGCGGGGGCGTGGATGCTGCCGCGCTCCTCCGGCCAGATCTAGCTAGCAGGCCATGGCGATGCGGGGGGTCGATTTCAAGTGGTACGATGGATTCTTCCTCTCCATGCTCGCCACCAGCCTAATCATTGTCTCCATCAACTGGAAGAGGTATCGTCTCTGCGCCCACCCGTTGCACATATGGATCGTGGTTGACTACACCACCGTCTTCATCTTCCGCCTTCTCATGTTCGTCGATAATGGCCTTGCCGCCGGCATGGGATTGGATCTTGGATGGCAACAGAGATATGCTCGTTTTTGTGGGAGAATTGTTGTCTTGTCGGTTCTTGTGCTTCTTCTCTATCCCTTTCTTTGGGTTTGGACTGTGATAGGAACATTGTGGTTTAGCACTGCAAGAGGCTGTTTACCCGAGGAAGGACAAAAATGGGGCTTCCTTATATGGCTGCTTTTCAGCTACTGTGGTCTCGCCTGTATTGCGTGTGTGGCTGTTGGAAAGTGGCTAAGCCGAAGGCATGCTCTCCAGCAGAGGGCACAACAGGGAATACCAGTCTCTGAATATGGGGTTTTGGTTGACATGATCCGTGTGCCTGATTGGGCATTTGAGGCCGTTGGCTTGGAAATGAGAGGAATGGGCCAAGATACTGCATATCATCCTGGTCTTTATTTAACAGCTGCCCAAAGAGAGGCAGTTGAGGCACTGATTCAAGAACTCCCGAAGTTCAGACTGAAAGCTGTTCCTACAGACTGCAGTGAGTGTCCAATCTGCCTGGAGGAATTCCATGTTGGCAACGAGGTCCGTGGGCTCCCGTGCGCGCACAATTTCCATGTGGAGTGCATCGACCAGTGGCTCCGGCTGAATGTCAAGTGCCCCCGTTGCCGGTGCTCCGTCTTCCCCAACCTCGACCTGAGCGCGCTCAACAACCTCCGGCCATCCTCCGAGCCGGACCGGCCGTCGGCCAGCGAGGTGACAGCGGCGACGATGGCGCGGTACGTGAGGTCGTCGCAGCCGGCTGGGCAGAGCTACCTGCTGCGGCTGCAGGGGCTGCTGCTGCGGCAGGTGGTGGTTCGGCACGGCGGCGGCGACGACATGGCGAGCGCCGAGAACGGCGCTTCTCATGTGGCCGCCGCGGTGACCGCGCCGGCGACCACCGGCGGCGTGGAGAGCGAGCTGCCTAGCATAGTGGTTGACGGTGGGCATCAGCTGCCGGATCGCTGAAGCGCCCGGTGGACGGCGTGATGTAGACTGATAGTTATATGTGTGGGGAAGGGGAGGATCGAAGCTATGCAGCAGCATGTTTTTTTTTTCTTTGATCTTATCTCCTGTGTGCAGAGTGTATAAATATTATGTAAAGGAGATCATTATTGCAAGCTTTTGTTTCCCTTTTCCTTCTGTTTGTCGCTTGCTTCTTCATCTGTAAAACGGCCTGCTGTCTTTTTCCCAGGGTCCCCGGTGATGCCTGCCCAAAGCCGCTTTAAAATGACAACCTTAAAATGAGCTTTAAGAAAGTATCAAGATCCATGTACATCGAGAAAATTTCTGGTACAGTGAGTTTATTTGCTTAATTTCATGAACTGTACATGAATCAGCAAGAGCA
CDS Sequence
  • >LOC_Os05g05280.1
    ATGGCGATGCGGGGGGTCGATTTCAAGTGGTACGATGGATTCTTCCTCTCCATGCTCGCCACCAGCCTAATCATTGTCTCCATCAACTGGAAGAGGTATCGTCTCTGCGCCCACCCGTTGCACATATGGATCGTGGTTGACTACACCACCGTCTTCATCTTCCGCCTTCTCATGTTCGTCGATAATGGCCTTGCCGCCGGCATGGGATTGGATCTTGGATGGCAACAGAGATATGCTCGTTTTTGTGGGAGAATTGTTGTCTTGTCGGTTCTTGTGCTTCTTCTCTATCCCTTTCTTTGGGTTTGGACTGTGATAGGAACATTGTGGTTTAGCACTGCAAGAGGCTGTTTACCCGAGGAAGGACAAAAATGGGGCTTCCTTATATGGCTGCTTTTCAGCTACTGTGGTCTCGCCTGTATTGCGTGTGTGGCTGTTGGAAAGTGGCTAAGCCGAAGGCATGCTCTCCAGCAGAGGGCACAACAGGGAATACCAGTCTCTGAATATGGGGTTTTGGTTGACATGATCCGTGTGCCTGATTGGGCATTTGAGGCCGTTGGCTTGGAAATGAGAGGAATGGGCCAAGATACTGCATATCATCCTGGTCTTTATTTAACAGCTGCCCAAAGAGAGGCAGTTGAGGCACTGATTCAAGAACTCCCGAAGTTCAGACTGAAAGCTGTTCCTACAGACTGCAGTGAGTGTCCAATCTGCCTGGAGGAATTCCATGTTGGCAACGAGGTCCGTGGGCTCCCGTGCGCGCACAATTTCCATGTGGAGTGCATCGACCAGTGGCTCCGGCTGAATGTCAAGTGCCCCCGTTGCCGGTGCTCCGTCTTCCCCAACCTCGACCTGAGCGCGCTCAACAACCTCCGGCCATCCTCCGAGCCGGACCGGCCGTCGGCCAGCGAGGTGACAGCGGCGACGATGGCGCGGTACGTGAGGTCGTCGCAGCCGGCTGGGCAGAGCTACCTGCTGCGGCTGCAGGGGCTGCTGCTGCGGCAGGTGGTGGTTCGGCACGGCGGCGGCGACGACATGGCGAGCGCCGAGAACGGCGCTTCTCATGTGGCCGCCGCGGTGACCGCGCCGGCGACCACCGGCGGCGTGGAGAGCGAGCTGCCTAGCATAGTGGTTGACGGTGGGCATCAGCTGCCGGATCGCTGA
Protein Sequence
  • >LOC_Os05g05280.1
    MAMRGVDFKWYDGFFLSMLATSLIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFVDNGLAAGMGLDLGWQQRYARFCGRIVVLSVLVLLLYPFLWVWTVIGTLWFSTARGCLPEEGQKWGFLIWLLFSYCGLACIACVAVGKWLSRRHALQQRAQQGIPVSEYGVLVDMIRVPDWAFEAVGLEMRGMGQDTAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALNNLRPSSEPDRPSASEVTAATMARYVRSSQPAGQSYLLRLQGLLLRQVVVRHGGGDDMASAENGASHVAAAVTAPATTGGVESELPSIVVDGGHQLPDR*