Information report for LIP19;OsbZIP38
Gene Details
|
|
Functional Descriptions
- Expression of LIP19 is positively regulated by low temperature, but not affected by high (40 degrees C) temperature.
- The possibility is suggested that LIP19 is a transcriptional factor that is positively controlled by low temperature.
- The rice low-temperature-induced LIP19 gene encodes a 148-amino-acid basic region/leucine zipper (bZIP) protein, termed LIP19.
- Whereas the expression patterns of LIP19 and OsOBF1 in response to low temperatures were totally opposite, the locations of their expression were almost identical.
- Based upon the presented data, we propose a model describing the low-temperature signal switching mediated by LIP19 in rice.
Functional Keywords
Literature and News
- Low-temperature-dependent expression of a rice gene encoding a protein with a leucine-zipper motif . DOI: 10.1007/BF00276876 ; PMID: 8341255
- Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa . DOI: 10.1007/s11741-009-0216-3
- Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice . DOI: 10.1104/pp.107.112821 ; PMID: 18065552
- LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants . DOI: 10.1093/pcp/pci178 ; PMID: 16051676
Gene Resources
- UniProt: Q688Q7
- EMBL: AK065180, AK104844, AK105138
- AlphaFoldDB: Q688Q7
- EnsemblPlants: Os05t0129300-02
- Gramene: Os05t0129300-02
- KEGG: osa:4337699
- Orthologous matrix: VDIPEMV
- InterPro: IPR004827, IPR045314, IPR046347
- PANTHER: PTHR45764, PTHR45764:SF50
- SUPFAM: SSF57959
- PROSITE: PS00036, PS50217
- Gene3D: 1.20.5.170
- OrthoDB: Q688Q7
- SWISS-MODEL: Q688Q7
- Conserved Domain Database: cd14702
- eggNOG: ENOG502S1GC
Homologs
- Brachypodium distachyon: Bradi2g38380.1.p
- Hordeum vulgare: MLOC_52125.3, MLOC_52125.1, MLOC_52125.2
- Panicum virgatum: Pavir.3KG126900.1.p, Pavir.3KG133100.1.p
- Setaria italica: Seita.3G050300.1.p
- Setaria viridis: Sevir.3G050400.1.p
- Triticum aestivum: Traes_1DS_62FDD3493.1, Traes_1AS_94B6230FB1.1, Traes_1BS_A44C97E0F.2
Sequences
cDNA Sequence
- >LOC_Os05g03860.1
ACCTTCCCCATCCGTCTAATTGCGCCCCTTATGCATTAGAGCCCCCGGAGTCCCCTCTGTTTCGCAGATAAGTCCTTTGGTTCCCATCTTTTTATTACATTCAGGTCCTCCTAGTTTCTTTTCCTTTCGAGTCTACTCCTTGCATTCTTGCGAGGAAGCCCCTCGGGTTGGTCGAATTTTAGTTTCCACTCCCTCTCCTCGGGGAGTCGTTGCTGTTCTTGTTCTTGGTCGAGGTTGAGGTTGGTGGCGTAGATCCGATCTGAGGAATGTTTACCTATCCTTTCCTCTAACGTTCGCCGTACTCCGATGAAGTTGAACGTGCTCCGCCGCCGCCGTTCCCACTCCTTCTCCGTCGCCTTCCTCTACTGGTTCTACGTCTTCTCATGAACTCATCGCCTTCCTCCCAAGAACACCATCTCCAGCCTCTAATTGATTATATCTTGATTTCTTTTTCATCCTCCTACTAGTTTCTTTCTTGTGTTCTTTGGAATTTTTTTGATCTCTTGAAGAGATCCGGTTCTTGGATTAAGTTTTGGACAAGAACCGTACTGTGACCATGTCGTCGCCTTCGCGCCGGAGCTCCAGCCCGGAGAGCAACACCAGCGGCGGCGGCGGTGGCGCCGACGAGCGGAAGAGGAAGAGGATGCTGTCGAACAGGGAGTCGGCGAGGCGATCCAGGGCGAGGAAGCAGCAGAGGCTGGAGGAGCTGATCGCCGAGGCGGCGCGCCTCCAGGCCGAGAACGCGCGCGTCGAGGCGCAGATCGGGGCCTACGCGGGGGAGCTGAGCAAGGTCGACGGCGAGAACGCGGTGCTCCGCGCCCGCCACGGCGAGCTCGCCGGGCGCCTCCAGGCGCTCGGCAGCGTCCTGGAGATCCTCCAGGTGGCCGGCGCGCCCGTCGACATCCCGGAGATCCCCGACGACCCGCTGCTCCGCCCATGGCAGCCGCCGTTCGCGGCCCAGCCCATCGTCGCCACCGCCATGGCCGACGCCTTCCAGTTCTGAGCCACCATGGAGAGCTCGCACGCCATGGCCATTGGCATCAATGGCATGGTTGCAGCTGCATTACAACTAGTAGTACTAGCCTCTGTGGTTGTGTCTGATGATGCTTATTATGTTTAATTATGGTTTGCTTCATGTTGTTTTCATTAATCTAGACCATTAATAAGCAATGTGTGTTGTAATCTTGTCTAGTCTTATGTGAGATGTGTTCATCTCCAGTGCTCCTTGCTAATAAGGGTGGAAGAGAACAATCCGATTTGATGTAATTCTTGGAGAGCACATGTGTGCTGGTTTGTGATGTGATGAACTGATGATTGTAATATTTTGACATTGAACCTATGCTATAATGTTTGCAGCAATGAATCTATCCTTGTGTCACTGAATGGTTTTATTTGTTCCTGATTGAATTGTTTGGGAAGAATCCTGTGAATGATGTTGGTTTGGTGAGATGC
CDS Sequence
- >LOC_Os05g03860.1
ATGTCGTCGCCTTCGCGCCGGAGCTCCAGCCCGGAGAGCAACACCAGCGGCGGCGGCGGTGGCGCCGACGAGCGGAAGAGGAAGAGGATGCTGTCGAACAGGGAGTCGGCGAGGCGATCCAGGGCGAGGAAGCAGCAGAGGCTGGAGGAGCTGATCGCCGAGGCGGCGCGCCTCCAGGCCGAGAACGCGCGCGTCGAGGCGCAGATCGGGGCCTACGCGGGGGAGCTGAGCAAGGTCGACGGCGAGAACGCGGTGCTCCGCGCCCGCCACGGCGAGCTCGCCGGGCGCCTCCAGGCGCTCGGCAGCGTCCTGGAGATCCTCCAGGTGGCCGGCGCGCCCGTCGACATCCCGGAGATCCCCGACGACCCGCTGCTCCGCCCATGGCAGCCGCCGTTCGCGGCCCAGCCCATCGTCGCCACCGCCATGGCCGACGCCTTCCAGTTCTGA
Protein Sequence
- >LOC_Os05g03860.1
MSSPSRRSSSPESNTSGGGGGADERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGENAVLRARHGELAGRLQALGSVLEILQVAGAPVDIPEIPDDPLLRPWQPPFAAQPIVATAMADAFQF*