Gene Details:
- MSU gene ID: LOC_Os05g03860
- RAPdb gene ID: Os05g0129300
- Gene Symbol: LIP19 OsbZIP38
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Expression of LIP19 is positively regulated by low temperature, but not affected by high (40 degrees C) temperature.
- The possibility is suggested that LIP19 is a transcriptional factor that is positively controlled by low temperature.
- The rice low-temperature-induced LIP19 gene encodes a 148-amino-acid basic region/leucine zipper (bZIP) protein, termed LIP19.
- Whereas the expression patterns of LIP19 and OsOBF1 in response to low temperatures were totally opposite, the locations of their expression were almost identical.
- Based upon the presented data, we propose a model describing the low-temperature signal switching mediated by LIP19 in rice.
Function-related keywords:
Literature:
- Low-temperature-dependent expression of a rice gene encoding a protein with a leucine-zipper motif . DOI: 10.1007/BF00276876 ; PMID: 8341255
- Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa . DOI: 10.1007/s11741-009-0216-3
- Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice . DOI: 10.1104/pp.107.112821 ; PMID: 18065552
- LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants . DOI: 10.1093/pcp/pci178 ; PMID: 16051676
Related News:
Gene Resources:
- NCBI ID: X57325
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os05g03860.1
ACCTTCCCCATCCGTCTAATTGCGCCCCTTATGCATTAGAGCCCCCGGAGTCCCCTCTGTTTCGCAGATAAGTCCTTTGGTTCCCATCTTTTTATTACATTCAGGTCCTCCTAGTTTCTTTTCCTTTCGAGTCTACTCCTTGCATTCTTGCGAGGAAGCCCCTCGGGTTGGTCGAATTTTAGTTTCCACTCCCTCTCCTCGGGGAGTCGTTGCTGTTCTTGTTCTTGGTCGAGGTTGAGGTTGGTGGCGTAGATCCGATCTGAGGAATGTTTACCTATCCTTTCCTCTAACGTTCGCCGTACTCCGATGAAGTTGAACGTGCTCCGCCGCCGCCGTTCCCACTCCTTCTCCGTCGCCTTCCTCTACTGGTTCTACGTCTTCTCATGAACTCATCGCCTTCCTCCCAAGAACACCATCTCCAGCCTCTAATTGATTATATCTTGATTTCTTTTTCATCCTCCTACTAGTTTCTTTCTTGTGTTCTTTGGAATTTTTTTGATCTCTTGAAGAGATCCGGTTCTTGGATTAAGTTTTGGACAAGAACCGTACTGTGACCATGTCGTCGCCTTCGCGCCGGAGCTCCAGCCCGGAGAGCAACACCAGCGGCGGCGGCGGTGGCGCCGACGAGCGGAAGAGGAAGAGGATGCTGTCGAACAGGGAGTCGGCGAGGCGATCCAGGGCGAGGAAGCAGCAGAGGCTGGAGGAGCTGATCGCCGAGGCGGCGCGCCTCCAGGCCGAGAACGCGCGCGTCGAGGCGCAGATCGGGGCCTACGCGGGGGAGCTGAGCAAGGTCGACGGCGAGAACGCGGTGCTCCGCGCCCGCCACGGCGAGCTCGCCGGGCGCCTCCAGGCGCTCGGCAGCGTCCTGGAGATCCTCCAGGTGGCCGGCGCGCCCGTCGACATCCCGGAGATCCCCGACGACCCGCTGCTCCGCCCATGGCAGCCGCCGTTCGCGGCCCAGCCCATCGTCGCCACCGCCATGGCCGACGCCTTCCAGTTCTGAGCCACCATGGAGAGCTCGCACGCCATGGCCATTGGCATCAATGGCATGGTTGCAGCTGCATTACAACTAGTAGTACTAGCCTCTGTGGTTGTGTCTGATGATGCTTATTATGTTTAATTATGGTTTGCTTCATGTTGTTTTCATTAATCTAGACCATTAATAAGCAATGTGTGTTGTAATCTTGTCTAGTCTTATGTGAGATGTGTTCATCTCCAGTGCTCCTTGCTAATAAGGGTGGAAGAGAACAATCCGATTTGATGTAATTCTTGGAGAGCACATGTGTGCTGGTTTGTGATGTGATGAACTGATGATTGTAATATTTTGACATTGAACCTATGCTATAATGTTTGCAGCAATGAATCTATCCTTGTGTCACTGAATGGTTTTATTTGTTCCTGATTGAATTGTTTGGGAAGAATCCTGTGAATGATGTTGGTTTGGTGAGATGC
CDS Sequence
- >LOC_Os05g03860.1
ATGTCGTCGCCTTCGCGCCGGAGCTCCAGCCCGGAGAGCAACACCAGCGGCGGCGGCGGTGGCGCCGACGAGCGGAAGAGGAAGAGGATGCTGTCGAACAGGGAGTCGGCGAGGCGATCCAGGGCGAGGAAGCAGCAGAGGCTGGAGGAGCTGATCGCCGAGGCGGCGCGCCTCCAGGCCGAGAACGCGCGCGTCGAGGCGCAGATCGGGGCCTACGCGGGGGAGCTGAGCAAGGTCGACGGCGAGAACGCGGTGCTCCGCGCCCGCCACGGCGAGCTCGCCGGGCGCCTCCAGGCGCTCGGCAGCGTCCTGGAGATCCTCCAGGTGGCCGGCGCGCCCGTCGACATCCCGGAGATCCCCGACGACCCGCTGCTCCGCCCATGGCAGCCGCCGTTCGCGGCCCAGCCCATCGTCGCCACCGCCATGGCCGACGCCTTCCAGTTCTGA
Protein Sequence
- >LOC_Os05g03860.1
MSSPSRRSSSPESNTSGGGGGADERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGENAVLRARHGELAGRLQALGSVLEILQVAGAPVDIPEIPDDPLLRPWQPPFAAQPIVATAMADAFQF*