Information report for GLR1;OsWOX3B
Gene Details
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Functional Descriptions
- CONCLUSION: GLR1 plays an important role in rice trichome development and will contribute to breeding of glabrous elite rice varieties.
- Hairy Leaf 6, an AP2/ERF transcription factor, interacts with OsWOX3B and regulates trichome formation in rice.
- A loss-of-function mutant of LSY1 exhibited an asymmetrical defect from early leaf development, which is different from a symmetric defect in a double loss-of-function mutant of NAL2/3, whereas the expression of both genes was observed in a similar domain in the margins of leaf primordia.
- Expression domains and the level of adaxial/abaxial marker genes were affected in the LSY1 overexpressing plants, indicating that LSY1 is involved in regulation of adaxial/abaxial patterning at the margins of the leaf primordia.
- Additive phenotypes in some leaf traits of LSY1 nal2/3 triple mutants and the unchanged level of NAL2/3 expression in the LSY1 background suggested that LSY1 regulates lateral leaf development independently of NAL2/3.
- Our results indicated that all of the rice WOX3 genes are involved in leaf lateral outgrowth, but the functions of LSY1 and NAL2/3 have diverged.
- Tests of allelism in 51 glabrous rice (Oryza sativa) accessions collected worldwide identified OsSPL10 and OsWOX3B as regulators of trichome development in rice.
Functional Keywords
Literature and News
- Glabrous Rice 1, encoding a homeodomain protein, regulates trichome development in rice . DOI: 10.1186/1939-8433-5-32 ; PMID: 24279910
- Hairy Leaf 6, an AP2/ERF Transcription Factor, Interacts with OsWOX3B and Regulates Trichome Formation in Rice . DOI: 10.1016/j.molp.2017.09.015 ; PMID: 28965833
- LEAF LATERAL SYMMETRY1, a Member of the WUSCHEL-RELATED HOMEOBOX3 Gene Family, Regulates Lateral Organ Development Differentially from Other Paralogs, NARROW LEAF2 and NARROW LEAF3 in Rice . DOI: 10.1093/pcp/pcx196 ; PMID: 29272531
- Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes . DOI: 10.1111/jipb.13140 ; PMID: 34038040
- The identification of grain size genes by RapMap reveals directional selection during rice domestication . DOI: 10.1038/s41467-021-25961-1 ; PMID: 34584089
Gene Resources
- UniProt: Q5W7C3
- EMBL: AC078977, AP001111, AP014961
- AlphaFoldDB: Q5W7C3
- EnsemblPlants: Os05t0118700-01
- Gramene: Os05t0118700-01
- KEGG: osa:107275686
- Orthologous matrix: PSRCVGA
- InterPro: IPR001356, IPR009057, IPR044555
- PANTHER: PTHR45940, PTHR45940:SF46
- SUPFAM: SSF46689
- PROSITE: PS50071
- Gene3D: 1.10.10.60
- OrthoDB: Q5W7C3
- SWISS-MODEL: Q5W7C3
- Conserved Domain Database: cd00086
- eggNOG: ENOG502S13K
Sequences
cDNA Sequence
- >LOC_Os05g02730.1
ATGGCGCCGGCGGTGCAGCAGCAGCAGAGCGGCGGCGGCGGCGGATCGACGGGGGCGGCGGCGGTGGGGTCGACGACGCGGTGGTGCCCGACGCCGGAGCAGCTGATGATGCTGGAGGAGATGTACAGGGGAGGGCTCCGGACGCCGAACGCGGCGCAGATACAGCAGATCACGGCGCACCTCTCGACGTACGGCCGCATCGAGGGCAAGAACGTCTTCTACTGGTTCCAGAACCACAAGGCCCGCGACCGCCAGAAGCTCCGCCGCCGCCTCTGCATCTCCCACCACCTCCTCTCCTGCGCCCACTACTACCACCACCACCTCGCCGCCGCCGCCGCCGTCGTTCCGCCGCCGCAGCTTCTGCCGCCGCTGCACCCCTCCTCCTCCTCCTCCTCCTGCGGCGGTGGCCTCATCGACCACGCTAATTCCCTTCTCTCCCCCACGTCGGCGACCACCCCCACCTCCGCCGCCGCAGCAGCAGCAGCAGCAGCTTACACCACCAGCTACTACTACCCCTTCACCGCCGCCGCCGCACCGCCACCGCCCAGGACGTCGCCGGCGGCGAGCCCCCTCTTCCACTACAACCAGGGAGGCGGCGGCGTGGTGTTGCCGGCGGCGGAGGCGATCGGGCGTTCGTCGTCGTCGTCGGACTACTCGCTGGGGAAGCTAGTGGACAACTTCGGGGTGGCGCTGGAGGAGACGTTCCCGGCGCAGCCGCAGCAGCCGGCGACGACGATGGCGATGACGGCCGTCGTCGACACTACGGCGGTGGCGGCGGCGGCAGGTGGCTTCTGCCGGCCGCTCAAGACGCTGGACCTCTTCCCCGGCGGCCTCAAGGAAGAGCAGCATGACGTCGTCTAG
CDS Sequence
- >LOC_Os05g02730.1
ATGGCGCCGGCGGTGCAGCAGCAGCAGAGCGGCGGCGGCGGCGGATCGACGGGGGCGGCGGCGGTGGGGTCGACGACGCGGTGGTGCCCGACGCCGGAGCAGCTGATGATGCTGGAGGAGATGTACAGGGGAGGGCTCCGGACGCCGAACGCGGCGCAGATACAGCAGATCACGGCGCACCTCTCGACGTACGGCCGCATCGAGGGCAAGAACGTCTTCTACTGGTTCCAGAACCACAAGGCCCGCGACCGCCAGAAGCTCCGCCGCCGCCTCTGCATCTCCCACCACCTCCTCTCCTGCGCCCACTACTACCACCACCACCTCGCCGCCGCCGCCGCCGTCGTTCCGCCGCCGCAGCTTCTGCCGCCGCTGCACCCCTCCTCCTCCTCCTCCTCCTGCGGCGGTGGCCTCATCGACCACGCTAATTCCCTTCTCTCCCCCACGTCGGCGACCACCCCCACCTCCGCCGCCGCAGCAGCAGCAGCAGCAGCTTACACCACCAGCTACTACTACCCCTTCACCGCCGCCGCCGCACCGCCACCGCCCAGGACGTCGCCGGCGGCGAGCCCCCTCTTCCACTACAACCAGGGAGGCGGCGGCGTGGTGTTGCCGGCGGCGGAGGCGATCGGGCGTTCGTCGTCGTCGTCGGACTACTCGCTGGGGAAGCTAGTGGACAACTTCGGGGTGGCGCTGGAGGAGACGTTCCCGGCGCAGCCGCAGCAGCCGGCGACGACGATGGCGATGACGGCCGTCGTCGACACTACGGCGGTGGCGGCGGCGGCAGGTGGCTTCTGCCGGCCGCTCAAGACGCTGGACCTCTTCCCCGGCGGCCTCAAGGAAGAGCAGCATGACGTCGTCTAG
Protein Sequence
- >LOC_Os05g02730.1
MAPAVQQQQSGGGGGSTGAAAVGSTTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQKLRRRLCISHHLLSCAHYYHHHLAAAAAVVPPPQLLPPLHPSSSSSSCGGGLIDHANSLLSPTSATTPTSAAAAAAAAAYTTSYYYPFTAAAAPPPPRTSPAASPLFHYNQGGGGVVLPAAEAIGRSSSSSDYSLGKLVDNFGVALEETFPAQPQQPATTMAMTAVVDTTAVAAAAGGFCRPLKTLDLFPGGLKEEQHDVV*