Information report for Xa5
Gene Details
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Functional Descriptions
- The recessive gene Xa5 confers resistance to bacterial blight in rice.
- Further, one allele of Xa5 is sufficient to promote disease in previously resistant plants; additional copies are not predictive of increased lesion length.
- The recessive gene Xa5 for resistance to bacterial blight resistance of rice is located on chromosome 5, and evidence based on genetic recombination has been shown to encode a small subunit of the basal transcription factor IIA (Iyer and McCouch in MPMI 17(12):1348-1354, 2004).
- The structural analysis indicates that Xa5 and Xa5 potentially retain their basic transcription factor function, which, in turn, may mediate the novel pathway for bacterial blight resistance and susceptibility, respectively.
- Testifying the rice bacterial blight resistance gene Xa5 by genetic complementation and further analyzing Xa5 (Xa5) in comparison with its homolog TFIIAgamma1.
- Genetic and functional characterization of the rice bacterial blight disease resistance gene Xa5.
- How Xa5 functions in bacterial blight resistance is not well understood, and its recessive gene action is disputed.
- The Xa5 resistance gene from rice provides recessive, race-specific resistance to bacterial blight of rice caused by the pathogen Xanthomonas oryzae pv oryzae.
- High resolution genetic mapping and candidate gene identification at the Xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.).
- An Xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain.
Functional Keywords
Literature and News
- High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.) . DOI: 10.1007/s00122-003-1231-2 ; PMID: 12677405
- Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5 . DOI: 10.1007/s001220050545
- Construction of a BAC contig containing the xa5 locus in rice . DOI: 10.1007/s001220050999
- Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1 . DOI: 10.1007/s00438-005-0091-7 ; PMID: 16614777
- Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5 . DOI: 10.1094/PHYTO-98-3-0289 ; PMID: 18944079
- An xa5 Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen Xanthomonas oryzae pv. oryzae Is Nearly Identical to a Thai Strain . DOI: 10.3389/fmicb.2020.579504 ; PMID: 33193207
- Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice . DOI: 10.3389/fpls.2020.591457 ; PMID: 33329656
Gene Resources
- UniProt: A0A8J8Y791
- EMBL: CM000142
- EnsemblPlants: Os05t0107700-01
- Gramene: Os05t0107700-01
- Orthologous matrix: QYYELYR
- InterPro: IPR003194, IPR009083, IPR009088
- PANTHER: PTHR10966
- SUPFAM: SSF47396, SSF50784
- Gene3D: 1.10.287.190, 2.30.18.10
- OrthoDB: A0A8J8Y791
- SWISS-MODEL: A0A8J8Y791
- Conserved Domain Database: cd10014, cd10145
Sequences
cDNA Sequence
- >LOC_Os05g01710.3
GGCGTAAAATAAAGAGAAATCTGGCGTCTCGTCGTCTCCTCCGCTCCTCCTCTCCTTGCGCCAACAAGCCGACTCGCGATCTCCATCGGGCAAGAAGAGCAGAGCAGAGCAGGGGAGGGGATCCTGCAGGCGCACGCATCGCCCATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGTCCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAATAAATTGATAACTGCGAGGTCAGGGTTTGCCTGGTATTTGTTAGTCTCTTCTGCTAGACCTGGCTCCGCCTGAAGTGTACTGTACCACCACATTGTTTGTTTCATAATCAATGTGTGTCAATACAATCGTATGTGCTACCAGAGTATATCACAGCAGCAACTGTTTTAATTTGTATGCTTATGTAATTGTTATGCTACTGCTGTGTTGATAATGTGATATAAATGACTAAACGATGAGTAGTAGAAATTGTGCGGAGTCACCCTCCCCCTTCCTCATTTCTGAACCCTTTGGTTCTGTGTGACTCTTTGTATGTAACATGAACAAATACCTCCTTTCCCGTCTTTTTTTTGGATCCTATGTTAATGGTACCTTTACATTA - >LOC_Os05g01710.2
GGCGTAAAATAAAGAGAAATCTGGCGTCTCGTCGTCTCCTCCGCTCCTCCTCTCCTTGCGCCAACAAGCCGACTCGCGATCTCCATCGGGCAAGAAGAGCAGAGCAGAGCAGGGGAGGGGATCCTGCAGGCGCACGCATCGCCCATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGTCCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAATAAATTGATAACTGCGAGGTCAGGGTTTGCCTGGTATTTGTTAGTCTCTTCTGCTAGACCTGGCTCCGCCTGAAGTGTACTGTACCACCACATTGTTTGTTTCATAATCAATGTGTGTCAATACAATCGTATGTGCTACCAGAGTATATCACAGCAGCAACTGTTTTAATTTGTATGCTTATGTAATTGTTATGCTACTGCTGTGTTGATAATGTGATATAAATGACTAAACGATGAGTAGTAGAAATTGTGCGGAGTCACCCTCCCCCTTCCTCATTTCTGAACCCTTTGGTTCTGTGTGACTCTTTGTATGTAACATGAACAAATACCTCCTTTCCCGTCTTTTTTTTGGATCCTATGTTAATGGTACCTTTACATTA - >LOC_Os05g01710.1
GGCGTAAAATAAAGAGAAATCTGGCGTCTCGTCGTCTCCTCCGCTCCTCCTCTCCTTGCGCCAACAAGCCGACTCGCGATCTCCATCGGGCAAGAAGAGCAGAGCAGAGCAGGGGAGGGGATCCTGCAGGCGCACGCATCGCCCATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGTCCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAATAAATTGATAACTGCGAGGTCAGGGTTTGCCTGGTATTTGTTAGTCTCTTCTGCTAGACCTGGCTCCGCCTGAAGTGTACTGTACCACCACATTGTTTGTTTCATAATCAATGTGTGTCAATACAATCGTATGTGCTACCAGAGTATATCACAGCAGCAACTGTTTTAATTTGTATGCTTATGTAATTGTTATGCTACTGCTGTGTTGATAATGTGATATAAATGACTAAACGATGAGTAGTAGAAATTGTGCGGAGTCACCCTCCCCCTTCCTCATTTCTGAACCCTTTGGTTCTGTGTGACTCTTTGTATGTAACATGAACAAATACCTCCTTTCCCGTCTTTTTTTTGGATCCTATGTTAATGGTACCTTTACATTA
CDS Sequence
- >LOC_Os05g01710.3
ATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGTCCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAATAA - >LOC_Os05g01710.2
ATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGTCCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAATAA - >LOC_Os05g01710.1
ATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGTCCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAATAA
Protein Sequence
- >LOC_Os05g01710.3
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ* - >LOC_Os05g01710.2
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ* - >LOC_Os05g01710.1
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ*