Information report for YSS1
Gene Details
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Functional Descriptions
- Furthermore, levels of chloroplast proteins are mostly reduced in YSS1 seedlings.
- Together, our findings identify YSS1 as a novel regulator of PEP activity essential for chloroplast development at rice seedling stage.
- YSS1 encodes a chloroplast nucleoid-localized protein belonging to the DUF3727 superfamily.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q0J8Q7
- EMBL: AK060875, AK071726, AP014960
- AlphaFoldDB: Q0J8Q7
- EnsemblPlants: Os04t0692200-01
- Gramene: Os04t0692200-01
- KEGG: dosa:Os04g0692200
- Orthologous matrix: FMIYTPS
- InterPro: IPR022203
- PANTHER: PTHR36061, PTHR36061:SF3
- eggNOG: ENOG502QW8E
Sequences
cDNA Sequence
- >LOC_Os04g59570.1
CTCGAGTCCTCCCCCACAGCAGCAGCTGCTTGTACCTATCCTCCACCACCACCAGCAGCGAGTCATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGACCATGCCGCGGCCTGTATTGATGGTCGATCAGAGGCGGAGACTGCAATGGTGGGCGTCCATCGATCATCATTCCCACCCACCAATTAAGTAGCAGAAGCAAGCTCCCCGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGTAGCAGAAGCAAGCTAAGATAGACTGCGAGAAGATTTGTACTACAACCAACAATAGGGATATATATAGAATGGAGCACTGTGATGTTAGATGTGCAAAGTAGCTTGAACTAGGGACTCATATTAAGCTGCTTCTCTCCGATGAAGCTTGCAAACTCAGTCTGTTGTTCTTGCTGGCCTCGCATGATGGTGATCTTGCACTTGTTTAGGGGTACTAGTACCATAGCCCTTCTTGGGGAGGGAGT - >LOC_Os04g59570.2
CTCGAGTCCTCCCCCACAGCAGCAGCTGCTTGTACCTATCCTCCACCACCACCAGCAGCGAGTCATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGACCATGCCGCGGCCTGTATTGATGGTCGATCAGAGGCGGAGACTGCAATGGTGGGCGTCCATCGATCATCATTCCCACCCACCAATTAAGTAGCAGAAGCAAGCTCCCCGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGTAGCAGAAGCAAGCTAAGATAGACTGCGAGAAGATTTGTACTACAACCAACAATAGGGATATATATAGAATGGAGCACTGTGATGTTAGATGTGCAAAGTAGCTTGAACTAGGGACTCATATTAAGCTGCTTCTCTCCGATGAAGCTTGCAAACTCAGTCTGTTGTTCTTGCTGGCCTCGCATGATGGTGATCTTGCACTTGTTTAGGGGTACTAGTACCATAGCCCTTCTTGGGGAGGGAGT
CDS Sequence
- >LOC_Os04g59570.1
ATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGA - >LOC_Os04g59570.2
ATGGCGGCCATGGCGATGGTGTCCGTGCAACTCACAGTCGCGGCGAGGCCCCTGCGCTCCCGCCGCGCGCTCTCCGTCTTCACCTGCGCCGCACCCCCGAGGCAGCGGCCTCCTCCAGGCCCAACCAAGCACCGCCGCCTCCGCCACGACGCCGACGCGCAGCCTCCCAGGAAGCGAGGTCATCCTCCTCCTCCTCCTCCCAGGCGCACCCGCACCCGGGGCCCTCCCGCTCGCCCCCAACAATCCTACACTGACGACGACGAGGAAGAGGACGACCAAGACGAGGAGGAGGGGAGCTTCGGTGGGGGCACCCGGGCTGCCGCCATGCCCAAGCCGCCAGCGGGCTTCGTGCTGGACGACCAGGGAAGGTGCATCGCCGCCGCCTCCAAGCGCATCGTCACCATCATTGATGACACCAACAACCGGCCCTTGGAGTGCATCATCAGGAGGGTGTTCCGAAGCACGCTAGACCACGACTGCATGCTCCTTTGCCCAGTTGACATGCCTGTGCAGGTCCTTAAGAGTGCCAATTTCAGTGGCTGGATTGCTGTTGATGATGACCAGATTAAGGAAATCATTCCATCCGTTGCATATGCCCTCGCTAGAGTGCATATGCACTTTGTAGAGAGTGGATTTTGTTATACAGCACGGGGTGGCTTTTGCTTTCCTGAAGACGCGATTCAAGAATTTCATGATTCTGGTGACGGCGGTGATAGTGTACCTTTTGAAGGTGTAGAGATTTGTTGTTTCAATTTGGATGGCGCACATTATATGATTTATACACCAGTTGATCCTCTTCTGTTCGTTGCAGTGAAGGATAAAGATGGCGTGCTACGCATTGCTGAAGATGAACTCATGGACGACCCTGCTGTTGTCGGTGCCATAGACGAAGAGACAGAATTCACAGCTTTGGTGGAGGAGGAAGAGGCCCTTCTTGAATCGGTGCTGGGTGAAAGATGA
Protein Sequence
- >LOC_Os04g59570.1
MAAMAMVSVQLTVAARPLRSRRALSVFTCAAPPRQRPPPGPTKHRRLRHDADAQPPRKRGHPPPPPPRRTRTRGPPARPQQSYTDDDEEEDDQDEEEGSFGGGTRAAAMPKPPAGFVLDDQGRCIAAASKRIVTIIDDTNNRPLECIIRRVFRSTLDHDCMLLCPVDMPVQVLKSANFSGWIAVDDDQIKEIIPSVAYALARVHMHFVESGFCYTARGGFCFPEDAIQEFHDSGDGGDSVPFEGVEICCFNLDGAHYMIYTPVDPLLFVAVKDKDGVLRIAEDELMDDPAVVGAIDEETEFTALVEEEEALLESVLGER* - >LOC_Os04g59570.2
MAAMAMVSVQLTVAARPLRSRRALSVFTCAAPPRQRPPPGPTKHRRLRHDADAQPPRKRGHPPPPPPRRTRTRGPPARPQQSYTDDDEEEDDQDEEEGSFGGGTRAAAMPKPPAGFVLDDQGRCIAAASKRIVTIIDDTNNRPLECIIRRVFRSTLDHDCMLLCPVDMPVQVLKSANFSGWIAVDDDQIKEIIPSVAYALARVHMHFVESGFCYTARGGFCFPEDAIQEFHDSGDGGDSVPFEGVEICCFNLDGAHYMIYTPVDPLLFVAVKDKDGVLRIAEDELMDDPAVVGAIDEETEFTALVEEEEALLESVLGER*