Gene Details:

Functional Descriptions:

  • OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.
  • Here, the two loss-of-function T-DNA insertion mutants of root length regulator 4 (OsRLR4), OsRLR4-1 and OsRLR4-2 with longer PR, and three OsRLR4 overexpression lines, OE-OsRLR4-1/-2/-3 with shorter PR compared to the wild type, Hwayoung (WT/HY), were identified.
  • OsRLR4 controls PR development by regulating auxin accumulation in the PR tip and thus the root apical meristem activity.
  • A series of biochemical and genetic analyses demonstrated that OsRLR4 functions directly upstream of the auxin transporter OsAUX1.
  • Phylogenetic analysis of OsRLR4 from wild and cultivated rice indicated that it is under selective sweeps, suggesting its potential role in domestication.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os04g58960.1
    AAGAGAAGAGAATGGATTATGTGTGCCTGCTACTGCTCTGCACTGCATGCCTTGTTGCTTGTGACATTTTCGGTTAATTTTCGATCAGCGCCAATTCAAAGGCAGAGCGCGTAGTAGTGACATCCGCTCATTCCAAAGTCAGATTTACTGCGTTCCAAAAAAGAAAAAAAAAGGGTCAGATTTACTGAGCTTTTGCTTTGGAGAGAAGGAAAGCCTCGAGTTTGTTCATGTTGTGCCTTGACAGGATTGCAGTTAATCTGAGAATCCGTCGGTCGTCTTCCTTCCTCCGAGTCCGACGACGAGAGAAGAAGCAAATTCGAGGAGAGAGCGGAGGGAGGCTGTCCTCCTCTTTATTTATTGAAGGAAAGAGGCAGCAGAAGCACTCCCTGCACGACCCCACTCCCTCTCCACTCCACCACCTCCTCCTCCTCCACTCCCCACCTCGCCGCCGCAAGCGCCCGGCCGCCACCACCACCGCCGCCGCCCTCTTCGTCTCTCTATCTTCAATCTTCGCCTACCTTGTCTCCTCCATTCTTCAACCTTGGCTTCCTTCCATTTCGGCGCCACTATTCTTTCTTTTTCTTTTCTTTTCCTTTCTTTTCTGAGTCGCTGTGTTGGAAGCCAGCCTTGGAGGCATTCATGAGCGCCCGACGACCAGCTCCATGATGACCGGAGGCCGCCGATGGAATGGCAGATCCCGTCGATATCGACAAGGCACTTATTGCTTTAAAGAAAGGCACCCAACTGCTTAAATATGGTCGCAAGGGGAAGCCAAAATTTACTCCCTTCAGACTATCAAATGATGAATCAACACTAATTTGGGTCTCAAATAACAAAGAGAAAAGTTTGAAGCTATCATCTGTGTCTAGAGTTCTCTCGGGACAAAGAACATTGGTTTTTCAACGTTTTCTGCTCCCTGAGAAGGACCATTTATCCTTCTCACTCATATATAATGATGGCAAGCGGTCTCTTGATCTGATCTGCAAGGATAAAGTTGAGGCAGAAGTATGGTTTGCAGGCCTTAATGTATTGATATCTCCTGGACAGCATGGATCCCAACACCAACACATTGATGGAATACGCAACGGTGCCCTGTCTTTTGAGTGTGGCAGAGATAGTAGCCTAAGCAGTAGCTCTGCTTATACAACGGATTCCTTTGAGAATAAGTTGAGCTCAGCGAATTCTGCCAAGGATCGTTCTTCAGGAGAATTTACATATTCAGAAAGGACAGATGTGTCAGATATGCAAGTGAAAGGTGCTTCTTCAGACATTCGAATCAGTGTTTCCAGTGCTCTCAGCACATCCAGCCATGGTTCTGGAGATGATTCTGAATCTTTTGGAGATGTTTATGTATGGGGGGAAGTCATGTGTGACACTACTTGTAGGCAAGGATCTGACAGTAATGCTTACTCTGCTACTGCAGCTACTGATATTCTTGTACCGAAGCCCTTAGAGTCAAATGTAATGCTTGATGTCAGTTATGTGGCTTGTGGTGTGAAGCACGCGGCACTGGTTACTCGACAGGCAGAGGTATTTACATGGGGAGAAGAATGCAGTGGCCGTCTTGGTCATGGGGCCGGCACAAGCATTTTTCAACCACGTCTTGTTGAGTCATTGTCTATCTGCAATGTCGAAACAATTGCCTGTGGTGAATTCCATACTTGTGCTATCACTGCAACTGGTGACCTTTACACCTGGGGAGATGGTACCCACAACGCTGGACTCCTTGGTCATGGAAGTAACGTGAGCCACTGGATTCCAAAAAGAGTTTCAGGTCCTTTGGAGGGCCTTCAGGTGTCAGCTGTTTCTTGTGGCACATGGCATACTGCTTTGATAACCAGTTCTGGAAAATTGTACACGTTTGGTGATGGCACATTTGGAGTCTTAGGTCATGGAAATAGAGAAACTATTTCATACCCGAAAGAAGTGGAGTCATTGAAGGGTTTGAGGACAATTTCTGTTTCATGTGGGGTGTGGCATACTGCTGCTGTTGTTGAGGTTATCATGGCACAGTCAAATACTTCATCTGGAAAGCTATTTACATGGGGTGATGGAGATAAATATCGCCTTGGGCATGGTGACAGGTCTTCAAAACTGAAACCAACCTGTGTGCCTTCATTAATAGATTACAATTTCCATAAGGCTGTGTGTGGTCATACTCTAACAATTGGATTGACTACTTCAGGCCATATATTTACTGCTGGGAGCTCTGTGTATGGACAGCTTGGCAATCCCAATAATGATGGAAGGTATCCACGCCTAGTTGAAGAGAAGCTTGGTGGTGGTGGTGTTGTGGAAGTTGCGTGTGGAGCTTATCATGTTGCGGTATTGACACAGAGCGGTGAAGTCTACACATGGGGTAAGGGTGCAAATGGAAGATTGGGTCATGGTGATATTGCAGATCGTAAGACACCTACATTTGTTGAGGCTTTAAGGGATAGGTCTGTAAAACGCATCGCTTGTGGATCAGGCTTCACAGCTGCAATTTGTCAACATAAATCGGTGTCTGGGATGGAGCAGTCTCAGTGCTCATCATGCAGACAGCCATTTGGGTTCACCCGAAAGAGGCACAACTGTTATAACTGTGGATTAGTACACTGCCATTCCTGCAGTTCAAAAAAGGCTCTAAGAGCAGCATTGTCCCCTAATCCTGGAAAGCCATATCGCGTATGTGATTCATGTTACCTGAAACTAAGTAAAGTTTTGGATTCTGGAATCGGTCATAACAAGAACAATACGCCTCGCATACCAGGTGATTCCAAGGCTGATAAAATGGACTCAAAGGGAAACAGAGTTGCATCCGCTAATAGCTCAGATATGATCAAGAACTTGGATGTGAAGGCAGCAAAGCAGACAAAGAAGTATGACTATCCACCACAGTTCCCTGCGATTTTGCAGCTGAAGGACATCCCTTTCATTGGGGCTGCTGACCAGCAACCTAATGACTCCACATATAGTTCACCTTTGTTGAGGCTGCCAAATCTGAATTCTTCTAGTTCCTTGTCCTCAGAAAGCTTTGATATTCTTAGAGATGCAAATGAACTTCTGAAGCAAGAGGTTCAAAAACTAAAAGAAGAGGTTAACAGCTTGAGGCAGCAACGTGAACAGCAAGATGCAGATTTGCAGAAATCAGAGGCAAAAGCTCATGAGGCCATGACCCTGGCCTCTGAAGAAGCATCCAAATCGAAGGCTGCAAAGGATGTTATTAAATCACTAACAGCACAGCTAAAAGAAATGGCTGAAAGGCTTCCTCCAGCATCATGTGACACGAAGCAAACACGGCAGCCTTATCTACCTGGTGGTGCAGTTTCTCCTGATACAGGGAGAGAAAACCAAAAGAGATATGAGCCAGGCAGCTTCCAGTACCCACAAACACCTACTTCTGTTGCATCGGCCCGGTTTAATGGGTTCCTTGCTCAAGCCCATCAAATAAGTGAACCCAATGGTAACACGATGGTTCCACATGACAGCAGGCATGAAAACAATGGCAACACTAAGGAGTTCCCAGTTGCGCAGCAGATGACCAATGGTGGGATGACGGGGTATCGCCCAAGAACAGAAGATCATGATCGGCGGGAAACAGAAAGGTTCCAAATAAACCTCCATGGTTTCAACATGAGAGGTTCTAGCTCACCCAGCAACCAAGTCGAAGCTGAATGGATAGAACAATACGAACCAGGGGTATACTTAACACTAGTTTCTCTTCGTGATGGAACCAAGGAGCTGAAAAGAGTGCGGTTCAGCCGGAGAAGATTTGGAGAGCATCAGGCGGAATCATGGTGGAATGACAACCGTGAAAAAGTGTACGACAAATACAACGTGCGGGGAACTGATCGGATTTCTTCAGTGATGACAGCGTAGTGTGATAATACCAGCTAGAAGCTAAATTCTCAAACTGATTCAGATCTCAGAAGAGATCTTTTTTTCCCTCGCCTAAATGTATTTGATGATGCTCTCTTCCTGACTATCTTCTCCTGTACTATTGTTGTATAGAAGGAATCAGAATTGATGATGTGTCGTATGAATAGGGTAATACAGTGCAGTGAGGTTGCTCTGTTGACCATGATACGAGGCTGTGTATGTCTGTATGTATATTCGTGGGAGTTAGTGGACGAGTCTTGAGCAAAAGCTCCTTCATTTACATGAATGAAACGGAATGCTCTTGGAAGTGGACGATGGGTTTCTTGATCTC
CDS Sequence
  • >LOC_Os04g58960.1
    ATGGCAGATCCCGTCGATATCGACAAGGCACTTATTGCTTTAAAGAAAGGCACCCAACTGCTTAAATATGGTCGCAAGGGGAAGCCAAAATTTACTCCCTTCAGACTATCAAATGATGAATCAACACTAATTTGGGTCTCAAATAACAAAGAGAAAAGTTTGAAGCTATCATCTGTGTCTAGAGTTCTCTCGGGACAAAGAACATTGGTTTTTCAACGTTTTCTGCTCCCTGAGAAGGACCATTTATCCTTCTCACTCATATATAATGATGGCAAGCGGTCTCTTGATCTGATCTGCAAGGATAAAGTTGAGGCAGAAGTATGGTTTGCAGGCCTTAATGTATTGATATCTCCTGGACAGCATGGATCCCAACACCAACACATTGATGGAATACGCAACGGTGCCCTGTCTTTTGAGTGTGGCAGAGATAGTAGCCTAAGCAGTAGCTCTGCTTATACAACGGATTCCTTTGAGAATAAGTTGAGCTCAGCGAATTCTGCCAAGGATCGTTCTTCAGGAGAATTTACATATTCAGAAAGGACAGATGTGTCAGATATGCAAGTGAAAGGTGCTTCTTCAGACATTCGAATCAGTGTTTCCAGTGCTCTCAGCACATCCAGCCATGGTTCTGGAGATGATTCTGAATCTTTTGGAGATGTTTATGTATGGGGGGAAGTCATGTGTGACACTACTTGTAGGCAAGGATCTGACAGTAATGCTTACTCTGCTACTGCAGCTACTGATATTCTTGTACCGAAGCCCTTAGAGTCAAATGTAATGCTTGATGTCAGTTATGTGGCTTGTGGTGTGAAGCACGCGGCACTGGTTACTCGACAGGCAGAGGTATTTACATGGGGAGAAGAATGCAGTGGCCGTCTTGGTCATGGGGCCGGCACAAGCATTTTTCAACCACGTCTTGTTGAGTCATTGTCTATCTGCAATGTCGAAACAATTGCCTGTGGTGAATTCCATACTTGTGCTATCACTGCAACTGGTGACCTTTACACCTGGGGAGATGGTACCCACAACGCTGGACTCCTTGGTCATGGAAGTAACGTGAGCCACTGGATTCCAAAAAGAGTTTCAGGTCCTTTGGAGGGCCTTCAGGTGTCAGCTGTTTCTTGTGGCACATGGCATACTGCTTTGATAACCAGTTCTGGAAAATTGTACACGTTTGGTGATGGCACATTTGGAGTCTTAGGTCATGGAAATAGAGAAACTATTTCATACCCGAAAGAAGTGGAGTCATTGAAGGGTTTGAGGACAATTTCTGTTTCATGTGGGGTGTGGCATACTGCTGCTGTTGTTGAGGTTATCATGGCACAGTCAAATACTTCATCTGGAAAGCTATTTACATGGGGTGATGGAGATAAATATCGCCTTGGGCATGGTGACAGGTCTTCAAAACTGAAACCAACCTGTGTGCCTTCATTAATAGATTACAATTTCCATAAGGCTGTGTGTGGTCATACTCTAACAATTGGATTGACTACTTCAGGCCATATATTTACTGCTGGGAGCTCTGTGTATGGACAGCTTGGCAATCCCAATAATGATGGAAGGTATCCACGCCTAGTTGAAGAGAAGCTTGGTGGTGGTGGTGTTGTGGAAGTTGCGTGTGGAGCTTATCATGTTGCGGTATTGACACAGAGCGGTGAAGTCTACACATGGGGTAAGGGTGCAAATGGAAGATTGGGTCATGGTGATATTGCAGATCGTAAGACACCTACATTTGTTGAGGCTTTAAGGGATAGGTCTGTAAAACGCATCGCTTGTGGATCAGGCTTCACAGCTGCAATTTGTCAACATAAATCGGTGTCTGGGATGGAGCAGTCTCAGTGCTCATCATGCAGACAGCCATTTGGGTTCACCCGAAAGAGGCACAACTGTTATAACTGTGGATTAGTACACTGCCATTCCTGCAGTTCAAAAAAGGCTCTAAGAGCAGCATTGTCCCCTAATCCTGGAAAGCCATATCGCGTATGTGATTCATGTTACCTGAAACTAAGTAAAGTTTTGGATTCTGGAATCGGTCATAACAAGAACAATACGCCTCGCATACCAGGTGATTCCAAGGCTGATAAAATGGACTCAAAGGGAAACAGAGTTGCATCCGCTAATAGCTCAGATATGATCAAGAACTTGGATGTGAAGGCAGCAAAGCAGACAAAGAAGTATGACTATCCACCACAGTTCCCTGCGATTTTGCAGCTGAAGGACATCCCTTTCATTGGGGCTGCTGACCAGCAACCTAATGACTCCACATATAGTTCACCTTTGTTGAGGCTGCCAAATCTGAATTCTTCTAGTTCCTTGTCCTCAGAAAGCTTTGATATTCTTAGAGATGCAAATGAACTTCTGAAGCAAGAGGTTCAAAAACTAAAAGAAGAGGTTAACAGCTTGAGGCAGCAACGTGAACAGCAAGATGCAGATTTGCAGAAATCAGAGGCAAAAGCTCATGAGGCCATGACCCTGGCCTCTGAAGAAGCATCCAAATCGAAGGCTGCAAAGGATGTTATTAAATCACTAACAGCACAGCTAAAAGAAATGGCTGAAAGGCTTCCTCCAGCATCATGTGACACGAAGCAAACACGGCAGCCTTATCTACCTGGTGGTGCAGTTTCTCCTGATACAGGGAGAGAAAACCAAAAGAGATATGAGCCAGGCAGCTTCCAGTACCCACAAACACCTACTTCTGTTGCATCGGCCCGGTTTAATGGGTTCCTTGCTCAAGCCCATCAAATAAGTGAACCCAATGGTAACACGATGGTTCCACATGACAGCAGGCATGAAAACAATGGCAACACTAAGGAGTTCCCAGTTGCGCAGCAGATGACCAATGGTGGGATGACGGGGTATCGCCCAAGAACAGAAGATCATGATCGGCGGGAAACAGAAAGGTTCCAAATAAACCTCCATGGTTTCAACATGAGAGGTTCTAGCTCACCCAGCAACCAAGTCGAAGCTGAATGGATAGAACAATACGAACCAGGGGTATACTTAACACTAGTTTCTCTTCGTGATGGAACCAAGGAGCTGAAAAGAGTGCGGTTCAGCCGGAGAAGATTTGGAGAGCATCAGGCGGAATCATGGTGGAATGACAACCGTGAAAAAGTGTACGACAAATACAACGTGCGGGGAACTGATCGGATTTCTTCAGTGATGACAGCGTAG
Protein Sequence
  • >LOC_Os04g58960.1
    MADPVDIDKALIALKKGTQLLKYGRKGKPKFTPFRLSNDESTLIWVSNNKEKSLKLSSVSRVLSGQRTLVFQRFLLPEKDHLSFSLIYNDGKRSLDLICKDKVEAEVWFAGLNVLISPGQHGSQHQHIDGIRNGALSFECGRDSSLSSSSAYTTDSFENKLSSANSAKDRSSGEFTYSERTDVSDMQVKGASSDIRISVSSALSTSSHGSGDDSESFGDVYVWGEVMCDTTCRQGSDSNAYSATAATDILVPKPLESNVMLDVSYVACGVKHAALVTRQAEVFTWGEECSGRLGHGAGTSIFQPRLVESLSICNVETIACGEFHTCAITATGDLYTWGDGTHNAGLLGHGSNVSHWIPKRVSGPLEGLQVSAVSCGTWHTALITSSGKLYTFGDGTFGVLGHGNRETISYPKEVESLKGLRTISVSCGVWHTAAVVEVIMAQSNTSSGKLFTWGDGDKYRLGHGDRSSKLKPTCVPSLIDYNFHKAVCGHTLTIGLTTSGHIFTAGSSVYGQLGNPNNDGRYPRLVEEKLGGGGVVEVACGAYHVAVLTQSGEVYTWGKGANGRLGHGDIADRKTPTFVEALRDRSVKRIACGSGFTAAICQHKSVSGMEQSQCSSCRQPFGFTRKRHNCYNCGLVHCHSCSSKKALRAALSPNPGKPYRVCDSCYLKLSKVLDSGIGHNKNNTPRIPGDSKADKMDSKGNRVASANSSDMIKNLDVKAAKQTKKYDYPPQFPAILQLKDIPFIGAADQQPNDSTYSSPLLRLPNLNSSSSLSSESFDILRDANELLKQEVQKLKEEVNSLRQQREQQDADLQKSEAKAHEAMTLASEEASKSKAAKDVIKSLTAQLKEMAERLPPASCDTKQTRQPYLPGGAVSPDTGRENQKRYEPGSFQYPQTPTSVASARFNGFLAQAHQISEPNGNTMVPHDSRHENNGNTKEFPVAQQMTNGGMTGYRPRTEDHDRRETERFQINLHGFNMRGSSSPSNQVEAEWIEQYEPGVYLTLVSLRDGTKELKRVRFSRRRFGEHQAESWWNDNREKVYDKYNVRGTDRISSVMTA*