Information report for OsIM1
Gene Details
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Functional Descriptions
- Sequence analysis revealed that the amino-acid sequence of OsIM1 showed 66% and 62% identity with PTOX from tomato ( Capsicum annuum) and AtIM from Arabidopsis, both of which encoded chloroplast-orientated terminal oxidase.
- The Northern blot revealed that OsIM1 was up-regulated by NaCl and ABA treatment.
- RT-PCR analysis indicated that OsIM1 and OsIM2 co-existed in the OsIM transcript pool, and the ratio of OsIM1/ OsIM2 was differentially regulated by salt stress in the salt-sensitive variety and the salt-tolerant varieties.
- A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress.
- A differentially expressed OsIM1 gene was isolated from rice salt-tolerant mutant M-20 by differential display.
Functional Keywords
- chloroplast , ABA , salt-stress , salt
Literature and News
Gene Resources
- UniProt: Q0J974
- EMBL: AL606619, AP008210, CM000141
- EnsemblPlants: Os04t0668900-01
- Gramene: Os04t0668900-01
- KEGG: dosa:Os04g0668900, osa:4337339
- Orthologous matrix: AYHLSEC
- InterPro: IPR002680, IPR038659
- PANTHER: PTHR31803, PTHR31803:SF10
- Gene3D: 1.20.1260.140
- OrthoDB: Q0J974
- SWISS-MODEL: Q0J974
- Conserved Domain Database: cd01053
Sequences
cDNA Sequence
- >LOC_Os04g57320.1
ACAGTACACCACTCCAACTTCGGTTCTTCCCTCTTCCCATTTCCGCGCGGCGCAACACCTTCTGGACGTCGGCATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGACTGATCCTAATTGGAATGGAGTGCGTCATAGTCTCATAGAATAGAGTTTTGATAACAGTCGGTTTCCTTTTTTCTTTCAAAAGATAGGGACCACTATAATCTTAACATTCTTGATAATCCTTCAGAATAGGCTAGCTGTATCACAATAAAAATAATATATTCATGAGATAGATGTTACTGCAAGTTGTGAAGCCCTACAAAATTTGCAATCTTGATGTGCTGTGGTTCTATGGAAAGTTCGGTTGCTTGCTGCTTCTTAAGTTCACAAAGCTGCTCTGTAAGGGAAATGGAGATGGCTCATGATCAGGCAGCATACGGTGAATATGGTCAGCTCAAGGTGGAACTGACTCAAACCGTAGAATTTCGTGAAGATGAGAAGGAAGCTCACTGCAGTATCGAAGAAGTCAATGCGAAATGAAAAATCAATCATACTGCTGCTTTGTTTTTTCTGAAGATTTATTTGTCATTTATTCAGTGTACAGATGATACTATTACATCTCAGGCAAATTACTGTATCGTCGTTCTCATAATCTTATCTATAGCACTATGCATTATAATGATCTGTATGGTGAGATTAGCTTTGTATGTGTGATTGTGTGTC - >LOC_Os04g57320.2
ACAGTACACCACTCCAACTTCGGTTCTTCCCTCTTCCCATTTCCGCGCGGCGCAACACCTTCTGGACGTCGGCATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGACTGATCCTAATTGGAATGGAGTGCGTCATAGTCTCATAGAATAGAGTTTTGATAACAGTCGGTTTCCTTTTTTCTTTCAAAAGATAGGGACCACTATAATCTTAACATTCTTGATAATCCTTCAGAATAGGCTAGCTGTATCACAATAAAAATAATATATTCATGAGATAGATGTTACTGCAAGTTGTGAAGCCCTACAAAATTTGCAATCTTGATGTGCTGTGGTTCTATGGAAAGTTCGGTTGCTTGCTGCTTCTTAAGTTCACAAAGCTGCTCTGTAAGGGAAATGGAGATGGCTCATGATCAGGCAGCATACGGTGAATATGGTCAGCTCAAGGTGGAACTGACTCAAACCGTAGAATTTCGTGAAGATGAGAAGGAAGCTCACTGCAGTATCGAAGAAGTCAATGCGAAATGAAAAATCAATCATACTGCTGCTTTGTTTTTTCTGAAGATTTATTTGTCATTTATTCAGTGTACAGATGATACTATTACATCTCAGGCAAATTACTGTATCGTCGTTCTCATAATCTTATCTATAGCACTATGCATTATAATGATCTGTATGGTGAGATTAGCTTTGTATGTGTGATTGTGTGTC
CDS Sequence
- >LOC_Os04g57320.1
ATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGA - >LOC_Os04g57320.2
ATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGA
Protein Sequence
- >LOC_Os04g57320.1
MAAVASASPLPAAAAPSTRCSPPPAFLPLRAHRPRVGTVATRRVFRAEAMRTQREKEQTEVAVEESFPFRETAPPDEPLVTAEESWVVKLEQSVNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQKCLETDTECVIPEDDCEGIVDCVKKSLVSKE* - >LOC_Os04g57320.2
MAAVASASPLPAAAAPSTRCSPPPAFLPLRAHRPRVGTVATRRVFRAEAMRTQREKEQTEVAVEESFPFRETAPPDEPLVTAEESWVVKLEQSVNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQKCLETDTECVIPEDDCEGIVDCVKKSLVSKE*