Gene Details:

Functional Descriptions:

  • Sequence analysis revealed that the amino-acid sequence of OsIM1 showed 66% and 62% identity with PTOX from tomato ( Capsicum annuum) and AtIM from Arabidopsis, both of which encoded chloroplast-orientated terminal oxidase.
  • The Northern blot revealed that OsIM1 was up-regulated by NaCl and ABA treatment.
  • RT-PCR analysis indicated that OsIM1 and OsIM2 co-existed in the OsIM transcript pool, and the ratio of OsIM1/ OsIM2 was differentially regulated by salt stress in the salt-sensitive variety and the salt-tolerant varieties.
  • A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress.
  • A differentially expressed OsIM1 gene was isolated from rice salt-tolerant mutant M-20 by differential display.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >LOC_Os04g57320.1
    ACAGTACACCACTCCAACTTCGGTTCTTCCCTCTTCCCATTTCCGCGCGGCGCAACACCTTCTGGACGTCGGCATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGACTGATCCTAATTGGAATGGAGTGCGTCATAGTCTCATAGAATAGAGTTTTGATAACAGTCGGTTTCCTTTTTTCTTTCAAAAGATAGGGACCACTATAATCTTAACATTCTTGATAATCCTTCAGAATAGGCTAGCTGTATCACAATAAAAATAATATATTCATGAGATAGATGTTACTGCAAGTTGTGAAGCCCTACAAAATTTGCAATCTTGATGTGCTGTGGTTCTATGGAAAGTTCGGTTGCTTGCTGCTTCTTAAGTTCACAAAGCTGCTCTGTAAGGGAAATGGAGATGGCTCATGATCAGGCAGCATACGGTGAATATGGTCAGCTCAAGGTGGAACTGACTCAAACCGTAGAATTTCGTGAAGATGAGAAGGAAGCTCACTGCAGTATCGAAGAAGTCAATGCGAAATGAAAAATCAATCATACTGCTGCTTTGTTTTTTCTGAAGATTTATTTGTCATTTATTCAGTGTACAGATGATACTATTACATCTCAGGCAAATTACTGTATCGTCGTTCTCATAATCTTATCTATAGCACTATGCATTATAATGATCTGTATGGTGAGATTAGCTTTGTATGTGTGATTGTGTGTC
  • >LOC_Os04g57320.2
    ACAGTACACCACTCCAACTTCGGTTCTTCCCTCTTCCCATTTCCGCGCGGCGCAACACCTTCTGGACGTCGGCATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGACTGATCCTAATTGGAATGGAGTGCGTCATAGTCTCATAGAATAGAGTTTTGATAACAGTCGGTTTCCTTTTTTCTTTCAAAAGATAGGGACCACTATAATCTTAACATTCTTGATAATCCTTCAGAATAGGCTAGCTGTATCACAATAAAAATAATATATTCATGAGATAGATGTTACTGCAAGTTGTGAAGCCCTACAAAATTTGCAATCTTGATGTGCTGTGGTTCTATGGAAAGTTCGGTTGCTTGCTGCTTCTTAAGTTCACAAAGCTGCTCTGTAAGGGAAATGGAGATGGCTCATGATCAGGCAGCATACGGTGAATATGGTCAGCTCAAGGTGGAACTGACTCAAACCGTAGAATTTCGTGAAGATGAGAAGGAAGCTCACTGCAGTATCGAAGAAGTCAATGCGAAATGAAAAATCAATCATACTGCTGCTTTGTTTTTTCTGAAGATTTATTTGTCATTTATTCAGTGTACAGATGATACTATTACATCTCAGGCAAATTACTGTATCGTCGTTCTCATAATCTTATCTATAGCACTATGCATTATAATGATCTGTATGGTGAGATTAGCTTTGTATGTGTGATTGTGTGTC
CDS Sequence
  • >LOC_Os04g57320.1
    ATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGA
  • >LOC_Os04g57320.2
    ATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGA
Protein Sequence
  • >LOC_Os04g57320.1
    MAAVASASPLPAAAAPSTRCSPPPAFLPLRAHRPRVGTVATRRVFRAEAMRTQREKEQTEVAVEESFPFRETAPPDEPLVTAEESWVVKLEQSVNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQKCLETDTECVIPEDDCEGIVDCVKKSLVSKE*
  • >LOC_Os04g57320.2
    MAAVASASPLPAAAAPSTRCSPPPAFLPLRAHRPRVGTVATRRVFRAEAMRTQREKEQTEVAVEESFPFRETAPPDEPLVTAEESWVVKLEQSVNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQKCLETDTECVIPEDDCEGIVDCVKKSLVSKE*