Gene Details:
- MSU gene ID: LOC_Os04g57320
- RAPdb gene ID: Os04g0668900
- Gene Symbol: OsIM1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Sequence analysis revealed that the amino-acid sequence of OsIM1 showed 66% and 62% identity with PTOX from tomato ( Capsicum annuum) and AtIM from Arabidopsis, both of which encoded chloroplast-orientated terminal oxidase.
- The Northern blot revealed that OsIM1 was up-regulated by NaCl and ABA treatment.
- RT-PCR analysis indicated that OsIM1 and OsIM2 co-existed in the OsIM transcript pool, and the ratio of OsIM1/ OsIM2 was differentially regulated by salt stress in the salt-sensitive variety and the salt-tolerant varieties.
- A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress.
- A differentially expressed OsIM1 gene was isolated from rice salt-tolerant mutant M-20 by differential display.
Function-related keywords:
- chloroplast , ABA , salt-stress , salt
Literature:
- A new AOX homologous gene OsIM1 from rice (Oryza sativa L.) with an alternative splicing mechanism under salt stress . DOI: 10.1007/s00122-003-1250-z ; PMID: 12669200
Related News:
Gene Resources:
- NCBI ID: AK067891
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os04g57320.1
ACAGTACACCACTCCAACTTCGGTTCTTCCCTCTTCCCATTTCCGCGCGGCGCAACACCTTCTGGACGTCGGCATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGACTGATCCTAATTGGAATGGAGTGCGTCATAGTCTCATAGAATAGAGTTTTGATAACAGTCGGTTTCCTTTTTTCTTTCAAAAGATAGGGACCACTATAATCTTAACATTCTTGATAATCCTTCAGAATAGGCTAGCTGTATCACAATAAAAATAATATATTCATGAGATAGATGTTACTGCAAGTTGTGAAGCCCTACAAAATTTGCAATCTTGATGTGCTGTGGTTCTATGGAAAGTTCGGTTGCTTGCTGCTTCTTAAGTTCACAAAGCTGCTCTGTAAGGGAAATGGAGATGGCTCATGATCAGGCAGCATACGGTGAATATGGTCAGCTCAAGGTGGAACTGACTCAAACCGTAGAATTTCGTGAAGATGAGAAGGAAGCTCACTGCAGTATCGAAGAAGTCAATGCGAAATGAAAAATCAATCATACTGCTGCTTTGTTTTTTCTGAAGATTTATTTGTCATTTATTCAGTGTACAGATGATACTATTACATCTCAGGCAAATTACTGTATCGTCGTTCTCATAATCTTATCTATAGCACTATGCATTATAATGATCTGTATGGTGAGATTAGCTTTGTATGTGTGATTGTGTGTC - >LOC_Os04g57320.2
ACAGTACACCACTCCAACTTCGGTTCTTCCCTCTTCCCATTTCCGCGCGGCGCAACACCTTCTGGACGTCGGCATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGACTGATCCTAATTGGAATGGAGTGCGTCATAGTCTCATAGAATAGAGTTTTGATAACAGTCGGTTTCCTTTTTTCTTTCAAAAGATAGGGACCACTATAATCTTAACATTCTTGATAATCCTTCAGAATAGGCTAGCTGTATCACAATAAAAATAATATATTCATGAGATAGATGTTACTGCAAGTTGTGAAGCCCTACAAAATTTGCAATCTTGATGTGCTGTGGTTCTATGGAAAGTTCGGTTGCTTGCTGCTTCTTAAGTTCACAAAGCTGCTCTGTAAGGGAAATGGAGATGGCTCATGATCAGGCAGCATACGGTGAATATGGTCAGCTCAAGGTGGAACTGACTCAAACCGTAGAATTTCGTGAAGATGAGAAGGAAGCTCACTGCAGTATCGAAGAAGTCAATGCGAAATGAAAAATCAATCATACTGCTGCTTTGTTTTTTCTGAAGATTTATTTGTCATTTATTCAGTGTACAGATGATACTATTACATCTCAGGCAAATTACTGTATCGTCGTTCTCATAATCTTATCTATAGCACTATGCATTATAATGATCTGTATGGTGAGATTAGCTTTGTATGTGTGATTGTGTGTC
CDS Sequence
- >LOC_Os04g57320.1
ATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGA - >LOC_Os04g57320.2
ATGGCGGCGGTCGCCTCCGCCTCCCCGCTCCCCGCCGCGGCGGCGCCCTCCACCCGCTGCTCGCCGCCGCCCGCCTTCCTCCCTCTCCGTGCGCACCGCCCCCGCGTCGGCACCGTCGCCACCAGGAGGGTTTTCCGCGCGGAGGCGATGAGGACGCAGCGGGAGAAGGAGCAGACCGAGGTGGCCGTCGAGGAGTCCTTCCCCTTCAGGGAGACGGCTCCTCCTGACGAGCCACTGGTCACCGCCGAGGAGAGCTGGGTGGTTAAGCTCGAGCAGTCCGTGAACATTTTCCTCACGGAGTCAGTCATCACGATACTTGATGGATTGTACCGTGACCGCAACTACGCTAGATTTTTCGTATTGGAGACGATTGCTAGGGTGCCGTATTTTGCGTTTATCTCGGTGCTTCACATGTATGAAACCTTTGGCTGGTGGAGGAGAGCCGATTATATAAAGGTGCACTTTGCTGAGAGCTGGAATGAGTTCCATCACCTCTTAATCATGGAAGAATTGGGTGGCAACTCTTTATGGGTTGATCGTTTTCTTGCACGGTTTGCTGCATTTTTTTACTACTTCATGACTGTTGCGATGTACATGGTGAGCCCAAGAATGGCATACCATTTTTCTGAATGTGTTGAGAGGCATGCGTACTCAACCTATGACAAGTTTATTAAGCTCCATGAAGATGAGTTGAAAAAGCTACCAGCTCCCGAGGCGGCTTTAAACTATTACCTGAATGAGGATCTTTACTTATTCGATGAATTTCAAACAGCAAGAGTCCCATGTTCTAGGAGACCTAAAATTGATAACTTGTATGATGTATTTGTCAATATACGAGATGATGAGGCAGAACATTGCAAGACGATGAAGGCCTGTCAAACACATGGAAACCTTCGTTCTCCTCACTCTATGCAGAAATGCTTAGAAACTGACACCGAGTGTGTAATACCTGAAGATGACTGTGAAGGTATCGTGGATTGTGTCAAAAAATCTCTTGTGAGTAAAGAGTGA
Protein Sequence
- >LOC_Os04g57320.1
MAAVASASPLPAAAAPSTRCSPPPAFLPLRAHRPRVGTVATRRVFRAEAMRTQREKEQTEVAVEESFPFRETAPPDEPLVTAEESWVVKLEQSVNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQKCLETDTECVIPEDDCEGIVDCVKKSLVSKE* - >LOC_Os04g57320.2
MAAVASASPLPAAAAPSTRCSPPPAFLPLRAHRPRVGTVATRRVFRAEAMRTQREKEQTEVAVEESFPFRETAPPDEPLVTAEESWVVKLEQSVNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQKCLETDTECVIPEDDCEGIVDCVKKSLVSKE*