Information report for OsHIP1;HAF1
Gene Details
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Functional Descriptions
- The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice.
- The HAF1 mutant exhibits a later flowering heading date under both short-day and long-day conditions.
- In addition, the HAF1 hd1 double mutant headed as late as hd1 plants under short-day conditions but exhibited a heading date similar to HAF1 under long-day conditions, thus indicating that HAF1 may determine heading date mainly through Hd1 under short-day conditions.
- HAF1 Modulates Circadian Accumulation of OsELF3 Controlling Heading Date Under Long-day Conditions in Rice.
- An amino acid variation (L558S) within the interaction domain of OsELF3 with HAF1 greatly contributes to the variation in heading date among japonica rice accessions.
- Taken together, our findings suggest that HAF1 precisely modulates the diurnal rhythm of OsELF3 accumulation to ensure the appropriate heading date in rice.
Functional Keywords
Literature and News
- OsHAL3 mediates a new pathway in the light-regulated growth of rice . DOI: 10.1038/ncb1892 ; PMID: 19543273
- The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice . DOI: 10.1105/tpc.15.00320 ; PMID: 26296966
- The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control Heading Date in Rice under Long-Day Conditions . DOI: 10.1105/tpc.18.00653 ; PMID: 30242038
Gene Resources
- UniProt: Q7XTV7
- EMBL: AK071468, AL606635, AP008210
- AlphaFoldDB: Q7XTV7
- EnsemblPlants: Os04t0648800-01
- Gramene: Os04t0648800-01
- KEGG: dosa:Os04g0648800
- Orthologous matrix: NANCASQ
- InterPro: IPR001841, IPR013083, IPR045191
- PANTHER: PTHR22937, PTHR22937:SF224
- SUPFAM: SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10
- OrthoDB: Q7XTV7
- SWISS-MODEL: Q7XTV7
- eggNOG: KOG0800
Homologs
- Brachypodium distachyon: BRADI_5g24120v3
- Setaria italica: SETIT_009566mg
- Setaria viridis: SEVIR_7G274100v2
- Triticum aestivum: TraesCS2D02G516000
Sequences
cDNA Sequence
- >LOC_Os04g55510.1
GGGAGGAAGAAAGGGATCCTTCCAACCAAGACCCACAGGAAGAGAGAGAGAGGGAGAGATGAGATGGAGAAATAAATAAATCCAAATTCAGCCAAACTTCTCTCTCTTCCTCCTCTTACATCCTCTCATCACCACCACCACCCCACCTCCTTCTCTCCCTGTCTTTCTCCTTCTCCTCCTCCTTCCTCTCGCTCTCTCCTCCTTGACAAAATTTCCTCCACCCATTCCCTTCTCCACCCACCCTGCCGATCTCTCTGAATTCGGTCGCCTCCTCCGCACCATCTTTCTCTCCTCCTCTCTTCTAGCAATCGGTCGTTTCCTCCGGTTGTTGTGCTGATTCTTCGTTCTTTCTCTCCCTCTCTCTCTCTTTCTTTCTTCCTCTCTCTGCCTTGGAGAGGATCAAGAAACGAAGGGAGGGAGGAGAGGAGAGGAGAAGGGAAATCGAGAAAAGTCTGTTCTTTGGTTTGGCTCGTGTGGTTCTTGAGAGCTGCTGTTTGGAAAATCTCTGCACCTGTTGCTGACCACTTGCTTCAATTGTTGAAAGAGATGAACAGCACCTGAGATGCTATTGCCAGACATCAATTGATAAAGAGCACATCTTCAGTAATGCAAGGACAGAAGAACTCTGTTGAGCAGCTTGCTGATGTGTTTGGATTTGACCATGCATCCAGTTCAGGAAACCCTGTCATGGATCAACAAGGATATTGGAACAACATTCTTGGTTCAGTGGAGTCACATAACCTTCAAGGTTATCAGGTGAACCGTAGTGATGGAACTATTCCCTATGGAAACGGTGTGCATCAAAATGGCACTTTTTTAGGTTTTTGGGAATCAGGCGAAGCAAGTGCAAGTGGCAGTTCACTACATTTTGGGGGCTCTAATGAGATCAAAGCTGAGCAACGTAATATCGGTGGTGGCCTAAGGATTGGTGAAAGGCGCTTGGTAGCTGAGCGCAACCTTTCTTTGGATAATGTTGATATAGGCCTTAACATCAATGGTAATGATCTATCTGGTGAAAATTCAAATGTGAATGGTGCTTCACAAGGCTCTGAACTACATGGTGGCTGCTCTCATACTGGTTCAAATGGTCAAGCCTCTGAGCTGAGATTACATCCATACAGGACATTCATATTAGGTGCAGATCAACCTGAGCCTTTTAATTCTTTGAATGGCAGTGAAAATCCTTTAGGTGATTTTTCCTTGATGCCAGAAGGCATTGATCAGCGACCAGGCAGTTCCCTGGATGGCCGCCGGCTGGCATGCAAGAGGAAAAATATAGAAGGAGTTAATGGGCAGTGCTCGGCAGGTGCTAGCACTAGTTTTTCCCACAGGAACGATAGTATTTTCCATAACATTGCTTCTTCGAGTCATAATCCCTCTCCTAGTACAAATTTACCCTCTCCTAATTGTCTGTTGGTTCCAAGCACTCTTGATGAACAACTCCCGCGTTATGGAGCTACTACAGCTGGATTGTCATCTAGTAGCTATGATCCTAGTGGAGGCAATAACAATTCAGGAGGCTCACAAAGAAGTTTTCGGCCAAGAACTAGCCTGGCTCAACATATTGGCCCCTATGGTGTGTGGCCATCTTCAAGTACTATCAGACATTCCAATTCATGGAATCATCAGCCACCTCCCTTTCAGAGTTCATTTGATGAACCACCGGAGGTAATTCCAGTGGTCAGTAGCCTGAACTTTCAATACCAGCATCCAATGAATGTCGTTCCTGGCATTCCACAGATGTCACACCGGTTCACTGGTCCAGGGGCCTCATCATCAAGAACAGGCAATTTGGAGAACAGAATTATTGGTAGTGAGGAATTTAGCGCGAGGAATGTAGTGGCTACCAGCTTCCCTGATGCAGTTCCTCCGGCCGCACTAGACATGAGGCATTTGATACCAGAACCATCTAGTTGGAATGTAGATGGCAGAGCTACTACCATTCCAGGAAATGTTCCTTCTTCATCGAGAGCTAATACCAATTCGATGGTTAATCCACCAGCAGGCTCTCCATTTATTGCCCATCAAAACTTGCATAGACGTAATCCTCGTAATTTGTCAGAGGAGATAAGTCGTTTATCTGGAGCTCTTCGTGGCCATCAGCACCCACGCCTAAGGTCCGGTTTTCTGTTAGAACGACAAGGTGATGGTGTTTGGGGTGTTCCGTTGTCAACTAGGAGCAGGGAAGGAAGAAGATTAATTGAGATCCGGAACGCGCTTGAAATGATTCACAGAGGGGAAAATGTAAGATTTGAGTCCATTTTCTATGGTGGAGTCGACATTCATGACAGACACAGGGATATGCGCCTTGACATAGACAACATGTCTTATGAGGAGCTATTGGCACTGGAAGAAAGAATAGGCAATGTTAGCACTGGCCTCAGTGAGGAAGAAGTGACAAAGCTCCTAAAGCAAAGGAAATTCTCATCATGGAGGTTGGAAGCATCTGTGGAAGAAGAGCCATGCTGTATCTGCCAGGAAGAGTATGTTGATGGGGATGATCTCGGGACACTGGACTGTGGACATGACTTCCATGTTGGATGCGTCAGGCAATGGCTGGTTGTGAAGAACACCTGTCCCATATGCAAAAATACTGCTCTGAAGTCTTAGAAAAAGCACAGGGCAGTAAACACTGTGTGCTTGTTCGATCGCAAGATCGTTTAGTGATTCATATTACCGTGCCGTTTTTTGATTAGAAATTTTTTTTGCCATTGACCTACAAATTTGATTAAAAAAAAAGGTAAAAGAACTGGTCCCTGCAAACTGCCCCCTCCTGCAGTAAATAATCCCTGGAATCTGTCGCTCTGCATTCAACTGAATATTTATGGCTGGTATATTGGATGATGGCTCAATATTTTTTTCACTGTCTGTGCCCTGTTAATCCTGCCTTA
CDS Sequence
- >LOC_Os04g55510.1
ATGCAAGGACAGAAGAACTCTGTTGAGCAGCTTGCTGATGTGTTTGGATTTGACCATGCATCCAGTTCAGGAAACCCTGTCATGGATCAACAAGGATATTGGAACAACATTCTTGGTTCAGTGGAGTCACATAACCTTCAAGGTTATCAGGTGAACCGTAGTGATGGAACTATTCCCTATGGAAACGGTGTGCATCAAAATGGCACTTTTTTAGGTTTTTGGGAATCAGGCGAAGCAAGTGCAAGTGGCAGTTCACTACATTTTGGGGGCTCTAATGAGATCAAAGCTGAGCAACGTAATATCGGTGGTGGCCTAAGGATTGGTGAAAGGCGCTTGGTAGCTGAGCGCAACCTTTCTTTGGATAATGTTGATATAGGCCTTAACATCAATGGTAATGATCTATCTGGTGAAAATTCAAATGTGAATGGTGCTTCACAAGGCTCTGAACTACATGGTGGCTGCTCTCATACTGGTTCAAATGGTCAAGCCTCTGAGCTGAGATTACATCCATACAGGACATTCATATTAGGTGCAGATCAACCTGAGCCTTTTAATTCTTTGAATGGCAGTGAAAATCCTTTAGGTGATTTTTCCTTGATGCCAGAAGGCATTGATCAGCGACCAGGCAGTTCCCTGGATGGCCGCCGGCTGGCATGCAAGAGGAAAAATATAGAAGGAGTTAATGGGCAGTGCTCGGCAGGTGCTAGCACTAGTTTTTCCCACAGGAACGATAGTATTTTCCATAACATTGCTTCTTCGAGTCATAATCCCTCTCCTAGTACAAATTTACCCTCTCCTAATTGTCTGTTGGTTCCAAGCACTCTTGATGAACAACTCCCGCGTTATGGAGCTACTACAGCTGGATTGTCATCTAGTAGCTATGATCCTAGTGGAGGCAATAACAATTCAGGAGGCTCACAAAGAAGTTTTCGGCCAAGAACTAGCCTGGCTCAACATATTGGCCCCTATGGTGTGTGGCCATCTTCAAGTACTATCAGACATTCCAATTCATGGAATCATCAGCCACCTCCCTTTCAGAGTTCATTTGATGAACCACCGGAGGTAATTCCAGTGGTCAGTAGCCTGAACTTTCAATACCAGCATCCAATGAATGTCGTTCCTGGCATTCCACAGATGTCACACCGGTTCACTGGTCCAGGGGCCTCATCATCAAGAACAGGCAATTTGGAGAACAGAATTATTGGTAGTGAGGAATTTAGCGCGAGGAATGTAGTGGCTACCAGCTTCCCTGATGCAGTTCCTCCGGCCGCACTAGACATGAGGCATTTGATACCAGAACCATCTAGTTGGAATGTAGATGGCAGAGCTACTACCATTCCAGGAAATGTTCCTTCTTCATCGAGAGCTAATACCAATTCGATGGTTAATCCACCAGCAGGCTCTCCATTTATTGCCCATCAAAACTTGCATAGACGTAATCCTCGTAATTTGTCAGAGGAGATAAGTCGTTTATCTGGAGCTCTTCGTGGCCATCAGCACCCACGCCTAAGGTCCGGTTTTCTGTTAGAACGACAAGGTGATGGTGTTTGGGGTGTTCCGTTGTCAACTAGGAGCAGGGAAGGAAGAAGATTAATTGAGATCCGGAACGCGCTTGAAATGATTCACAGAGGGGAAAATGTAAGATTTGAGTCCATTTTCTATGGTGGAGTCGACATTCATGACAGACACAGGGATATGCGCCTTGACATAGACAACATGTCTTATGAGGAGCTATTGGCACTGGAAGAAAGAATAGGCAATGTTAGCACTGGCCTCAGTGAGGAAGAAGTGACAAAGCTCCTAAAGCAAAGGAAATTCTCATCATGGAGGTTGGAAGCATCTGTGGAAGAAGAGCCATGCTGTATCTGCCAGGAAGAGTATGTTGATGGGGATGATCTCGGGACACTGGACTGTGGACATGACTTCCATGTTGGATGCGTCAGGCAATGGCTGGTTGTGAAGAACACCTGTCCCATATGCAAAAATACTGCTCTGAAGTCTTAG
Protein Sequence
- >LOC_Os04g55510.1
MQGQKNSVEQLADVFGFDHASSSGNPVMDQQGYWNNILGSVESHNLQGYQVNRSDGTIPYGNGVHQNGTFLGFWESGEASASGSSLHFGGSNEIKAEQRNIGGGLRIGERRLVAERNLSLDNVDIGLNINGNDLSGENSNVNGASQGSELHGGCSHTGSNGQASELRLHPYRTFILGADQPEPFNSLNGSENPLGDFSLMPEGIDQRPGSSLDGRRLACKRKNIEGVNGQCSAGASTSFSHRNDSIFHNIASSSHNPSPSTNLPSPNCLLVPSTLDEQLPRYGATTAGLSSSSYDPSGGNNNSGGSQRSFRPRTSLAQHIGPYGVWPSSSTIRHSNSWNHQPPPFQSSFDEPPEVIPVVSSLNFQYQHPMNVVPGIPQMSHRFTGPGASSSRTGNLENRIIGSEEFSARNVVATSFPDAVPPAALDMRHLIPEPSSWNVDGRATTIPGNVPSSSRANTNSMVNPPAGSPFIAHQNLHRRNPRNLSEEISRLSGALRGHQHPRLRSGFLLERQGDGVWGVPLSTRSREGRRLIEIRNALEMIHRGENVRFESIFYGGVDIHDRHRDMRLDIDNMSYEELLALEERIGNVSTGLSEEEVTKLLKQRKFSSWRLEASVEEEPCCICQEEYVDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPICKNTALKS*