Gene Details:
- MSU gene ID: LOC_Os04g53060
- RAPdb gene ID: Os04g0621900
- Gene Symbol: RGAe Hwc3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- A 4-kb DNA fragment from ‘CH7’ containing the Hwc3 gene with the inserted LTR retrotransposon was able to induce hybrid weakness in hybrids with ‘CH8’ plants carrying the Hwc1 gene by genetic complementation.
Function-related keywords:
Literature:
- A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice . DOI: 10.1093/jxb/ery442 ; PMID: 30576523
- Multiple Alleles Encoding Atypical NLRs with Unique Central Tandem Repeats in Rice Confer Resistance to Xanthomonas oryzae pv. oryzae . DOI: 10.1016/j.xplc.2020.100088 ; PMID: 33367251
Related News:
Gene Resources:
- NCBI ID: AK288361
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os04g53060.1
ATGGGGGACTTGAATTCCAGTTTAAGGGTCCTGAAGATTGAACAGTGCCCTGTTCTGAAGGTCTTTCCACTGTTTCAGAACTCCCAGCAATTTAAAATCGAGCGAATGTCATGGTTGTCTAGTCTTACCAAGCTTACCATCAATGATTGTCCTCATTTGCATGTGCACAATCCTCTTCCGCCTTCAACTATTGTTTCGGAATTATTTATCGCTGGAGTTTCAACACTTCCAAGGGTGGAGGGGTCATCCCACGGAACATTAAGAATTGGACGTCATCCTAATGATATTTTCAGTTTTGATTCCGATGATATTTTAGAGCTAATGATATTGGATGATAAATCTCTATCATTCCATAGCTTGAGGTCCCTAACTAGATTGGTAATAGATGGTTGCAAAAACCTTATGTCTGTTTTATTTGAAAGTTTAAGGCAACTCTTGCGTTTGAAGAGTTTGGGGATATACAACTGCCCACAACTTTTCTCTTCAAATGTCCCATCGGAGCTTACCAGTGAAGACACGACAGGTGCAAATCGCAACGCCCTCCCTTCTCTCGAATGTCTTGATATTGCTTCTTGTGGAATTAATGGGAAGTGGCTATCTCTGATGCTGCAACATGCGGAGGTCCTACAGAAATTGAGTATAACCTCGTGTTGGCAGATAAGAGGGCTATCAATAGGAGAGGAAGAAAATGGTCATCCAAATCTTATGTCAGCTACAGAGGCTTCGTCGTCAGGATATCCAAGTCGAGACGAACTTTTGCACCTTCCATTAAATCTCATCCCATCTCTGAAGAAGGTAACTATTAGATTCTGCAGTTTAAGATTTTATGGAAACAAGGAAGGTTTCGCTAGATTTACCTTCCTTGAGGGCATAGCAATTTCGCGATGCCCTGAGCTGATCTCGTCCTTGGTGCATAACAACAGAAAGGATGAGCAGGTGAACGGAAGATGGCTCCTCCCGCCATCAATTGTAGAACTTGAGATTCAAGATGATAATTATCTACAAATGTTGCAGCCCTGCTTTCCAGGGAGCCTCACCCACCTGAAAAGACTACAAGTACAGGGAAACCCAAATTTAACATCTCTGCAGCTGCATTCCTGCACAGAGCTCCAAGAGTTGATAATTCAAAGCTGTAGGTCACTTAATTCTCTACAAGGCTTGCAATCACTCTGCAACCTCAGGTTGCTGCGGGCATACAGATGCCTCGGCGATCTTGGAGGAGATGAAAGGTGTCTCCTTCCGCAATCAATTGAGGAACTTGATATCGACGAGTATTTTCAAGAAACTCTGCAGCCATTCTTTCCAAGGAATCTCACCTGCCTAAAAAAATTACGAGTATCAGGCACTACAAGTTTTAAATCTCTAGAACTGATGTCATGCACTGCACTCGAACATTTGAAGATTGAAGGTTGTGCATCGCTTGCTACATTAGTGGGCTTGCAATCCCTCCACAGCCTCAGGCATTTGGAAGTATTTAGATGCCCTAGCTTGCCTCTATGTTTGGAGAGTTTGTCAGGGCAGGGCTATGAGCTATGCCCTCGATTGGAAAGGCTCCAGATCGATGACCTCTCTATCCTTACTACGTCGCTCTGCCAGCACCTCATCTCAGTCCAATTCCTAGAGCTTTACGGAGATCCATACCTTTACATTCGTGGAGTCGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTCACGTCCTTGCAAGAGCTCCAATTCAAGTCTCATGACAGTCTTGTAGATCTTCCTACAGGGCTGCATAACCTTCCTTCCCTCAAGAGGTTGAAGATCGATAATTGCAAGAGCATCATGAGGCTGCCAGAGAAGGGTCTCCCACCTTCGTTGGAAGAATTGCATATCAGCAATTGCAGCAAAGAGCTAGCTGACCATTGCAGAATGCTAGAAAGCAAGCTGATGGTATCAACTGATTGATGATGAATATGTGGATTAATTATTGGGTGGCTTGATAAGCACACCTTTTTCCACCAGCCCAAATGATACCGGCAGTTCGGCACACACCTTTCTAAGCTATACATTTAGGAGTAAGTATTTTCTGTTAAGACGTTCAAGCTGCTATACATATCACCGCCGCAGTGACCTGTTCAGGACCATTTCAAGGGGAAAATATGTAAGGCAAATTATATATGTAGTGAAAACGTGAAAACTACCGTTGGATCCATAAATGGATGTTTGATATTTGTCCATGTCACTAAAAGTAAAAAAAAAAAAACTCCCAGATTCAACTATGAGTAAAAATTTTATTGGGAGTAAAATTTGTACTATTGATGATATGGACAAATATTAGATGTTCATTTTTAAATCCAACAATAGTTTTTAGGTTTCCTCTGTATACGTGGTTGGCACTGTATATTTTCCTCCATTTCAAGTGCCATATAACTACATGTTGTTTCTCTGGATCAACTTTTTTTAAGGAAAAATATTGTAGGAGAGTATCCTACAGCGTGTGTGTCCATATAGTAAATTTGTTTGGTGCTCCATGGTGCCTGGGCACCATGATTGAAATTGAGTATATACCCAATTCAAATGAGTATGAAATTTTTTTAAATGTTTAGGTATTAACATTAACTACTTTACTAACTAGTTCAAAACAAGTTTGAACTGAATTTAAACATGTTTTTGTTAGATTTTGAATCTAGGTATATAGCATCCAAACATAAAATTAGTTAGGTATGTAAGATCATTAAAATTGTATCTTCCATATCACATCCTTCTATATTTTAATAATATCTTCCAACTAACTTTACATTTGTATTTGAAGGGATATATTTTGAATGACTTAATTTAACGGTGTTATTTATCACGATAATATTTAGAAATGAGTAAATTTTAACGGATATATTTAAAATGAGTATAAAAGCAATGCAAGTAACATCTACTACTATATTTATTCTCTACTAGTACTACTGCTGAACTATTCCTTCTCTCTTCTACTAGTACTACTACTCTACATCGAGGGAGCGGTGGCGANGGGGCNGGGTCNGGGCNGGGAGAGGGACGGGGACGGCATGGCCANGGCNGGGTGAGGGGCCGGTGATGGTCGGGCNGGGCGAGGGGCGGCNGGGACGGNACAACCGGAGAGGGCGTGGGAGAAGCTACGAGCGGCAACGATGCCTGGGACGGCGGGGGCAAAGCTGCGGGCGGCGGCGATGGCTGGGACGGCCGAGCGGCGGGGGCGACGGCGGGCGCGGGCCTCTCCGCCAAATCCGCTGCCTTTCCACCTACACCAGCGATCTCCACCGCGAGTTCCGGTACACACCTCCTTTCTTCCGTCACTTCCAGTAGTCTTGATGGTGGCATAAGTTGGATTGGAACATGGGTAGTTGGAGGATGACGTGAGGAGAGAGAACCGCCATATTTGGCTTGTGAAGGTCTCCGTTTGGAGGACCTCCAAATATGGCGTGTGTGATGGAGCCTCTGCTGGCCCCTTTTTCCCCTTCTATACGCCAAAAATGGGATGGAGGACGGGATAGCGCTACTGCTGGGGATGCTCTAAGAGACTTGCTCCGGCCCGGTACCAAATCGTTTCCAAACGTTGGATCTAACTGGGCAGGATAGATATTTTTAGATCCAACGATTGGAAACGATTTGGTATCATGAGGTACTGATACTTCAAGGTACTTTTTGATGGACCGGAGCAAATCTCAACAATACAACTGCATTGAGAAGAATAGACAGCCACTTCTTCAGATCAGAAAGCCTGGTGAACTACCAGTCAGTAAATGGCTACCGTAATCTCCACTTTTCACTTATATGTACAAAGGACACCTGCACTATCAGAACACCCACAAAGCCAGTTCACTCACTACAAACTATCTTGACTAAATCCAAGCAGATACCGACTCCTCTTAGGCCTTGTTTAGATTTCAACTTTTTTCTTCAAACTTTCAACTTTTTCGTCACATCGAACTTTTCTACACACGTAAACTTCCAACTTTTCCGTCATATCGTTCCAATTTCTTCAAACTTCCAATTTTGGCGTGGAAAAACACACCCTTAATCAACTTACAAAACACCAACACTTTGGTGTATCCACAGCACCAATCACACAAGGAAATTTACCATCCACCTACTCGTATCCTACTGTTAGATTGGCCACCTTACACCAGAGAAAGGGCATTGCCAAATTCTGAGACGCTGTCCTTTGAGCTCCCCGAATCTGAACAAATAACATAAATCAGATAGAACACAACACAAAAATTTCCATTCATCAAGAAGTTGGTTGTTCTAATTATAAAGTGGCAGTGATGAGGACCCACCGCTCGCGACCTCAGTATCCTTCTCAATCTCCACTGATTGGTAAGTTGCTGTTGGCATTTTTTTCGCCGGGCCGGCGAATAACCGGCCGATGTATATTAAGAGAAAGAGTTGCTGTTGGCATTTCATCCCCGATATCTACATACTCATCCAACTGCTCGGCCTGTGTAGTGATCTTGTCA
CDS Sequence
- >LOC_Os04g53060.1
ATGGGGGACTTGAATTCCAGTTTAAGGGTCCTGAAGATTGAACAGTGCCCTGTTCTGAAGGTCTTTCCACTGTTTCAGAACTCCCAGCAATTTAAAATCGAGCGAATGTCATGGTTGTCTAGTCTTACCAAGCTTACCATCAATGATTGTCCTCATTTGCATGTGCACAATCCTCTTCCGCCTTCAACTATTGTTTCGGAATTATTTATCGCTGGAGTTTCAACACTTCCAAGGGTGGAGGGGTCATCCCACGGAACATTAAGAATTGGACGTCATCCTAATGATATTTTCAGTTTTGATTCCGATGATATTTTAGAGCTAATGATATTGGATGATAAATCTCTATCATTCCATAGCTTGAGGTCCCTAACTAGATTGGTAATAGATGGTTGCAAAAACCTTATGTCTGTTTTATTTGAAAGTTTAAGGCAACTCTTGCGTTTGAAGAGTTTGGGGATATACAACTGCCCACAACTTTTCTCTTCAAATGTCCCATCGGAGCTTACCAGTGAAGACACGACAGGTGCAAATCGCAACGCCCTCCCTTCTCTCGAATGTCTTGATATTGCTTCTTGTGGAATTAATGGGAAGTGGCTATCTCTGATGCTGCAACATGCGGAGGTCCTACAGAAATTGAGTATAACCTCGTGTTGGCAGATAAGAGGGCTATCAATAGGAGAGGAAGAAAATGGTCATCCAAATCTTATGTCAGCTACAGAGGCTTCGTCGTCAGGATATCCAAGTCGAGACGAACTTTTGCACCTTCCATTAAATCTCATCCCATCTCTGAAGAAGGTAACTATTAGATTCTGCAGTTTAAGATTTTATGGAAACAAGGAAGGTTTCGCTAGATTTACCTTCCTTGAGGGCATAGCAATTTCGCGATGCCCTGAGCTGATCTCGTCCTTGGTGCATAACAACAGAAAGGATGAGCAGGTGAACGGAAGATGGCTCCTCCCGCCATCAATTGTAGAACTTGAGATTCAAGATGATAATTATCTACAAATGTTGCAGCCCTGCTTTCCAGGGAGCCTCACCCACCTGAAAAGACTACAAGTACAGGGAAACCCAAATTTAACATCTCTGCAGCTGCATTCCTGCACAGAGCTCCAAGAGTTGATAATTCAAAGCTGTAGGTCACTTAATTCTCTACAAGGCTTGCAATCACTCTGCAACCTCAGGTTGCTGCGGGCATACAGATGCCTCGGCGATCTTGGAGGAGATGAAAGGTGTCTCCTTCCGCAATCAATTGAGGAACTTGATATCGACGAGTATTTTCAAGAAACTCTGCAGCCATTCTTTCCAAGGAATCTCACCTGCCTAAAAAAATTACGAGTATCAGGCACTACAAGTTTTAAATCTCTAGAACTGATGTCATGCACTGCACTCGAACATTTGAAGATTGAAGGTTGTGCATCGCTTGCTACATTAGTGGGCTTGCAATCCCTCCACAGCCTCAGGCATTTGGAAGTATTTAGATGCCCTAGCTTGCCTCTATGTTTGGAGAGTTTGTCAGGGCAGGGCTATGAGCTATGCCCTCGATTGGAAAGGCTCCAGATCGATGACCTCTCTATCCTTACTACGTCGCTCTGCCAGCACCTCATCTCAGTCCAATTCCTAGAGCTTTACGGAGATCCATACCTTTACATTCGTGGAGTCGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTCACGTCCTTGCAAGAGCTCCAATTCAAGTCTCATGACAGTCTTGTAGATCTTCCTACAGGGCTGCATAACCTTCCTTCCCTCAAGAGGTTGAAGATCGATAATTGCAAGAGCATCATGAGGCTGCCAGAGAAGGGTCTCCCACCTTCGTTGGAAGAATTGCATATCAGCAATTGCAGCAAAGAGCTAGCTGACCATTGCAGAATGCTAGAAAGCAAGCTGATGGTATCAACTGATTGA
Protein Sequence
- >LOC_Os04g53060.1
MGDLNSSLRVLKIEQCPVLKVFPLFQNSQQFKIERMSWLSSLTKLTINDCPHLHVHNPLPPSTIVSELFIAGVSTLPRVEGSSHGTLRIGRHPNDIFSFDSDDILELMILDDKSLSFHSLRSLTRLVIDGCKNLMSVLFESLRQLLRLKSLGIYNCPQLFSSNVPSELTSEDTTGANRNALPSLECLDIASCGINGKWLSLMLQHAEVLQKLSITSCWQIRGLSIGEEENGHPNLMSATEASSSGYPSRDELLHLPLNLIPSLKKVTIRFCSLRFYGNKEGFARFTFLEGIAISRCPELISSLVHNNRKDEQVNGRWLLPPSIVELEIQDDNYLQMLQPCFPGSLTHLKRLQVQGNPNLTSLQLHSCTELQELIIQSCRSLNSLQGLQSLCNLRLLRAYRCLGDLGGDERCLLPQSIEELDIDEYFQETLQPFFPRNLTCLKKLRVSGTTSFKSLELMSCTALEHLKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLCLESLSGQGYELCPRLERLQIDDLSILTTSLCQHLISVQFLELYGDPYLYIRGVEVARLTDEQERALQLLTSLQELQFKSHDSLVDLPTGLHNLPSLKRLKIDNCKSIMRLPEKGLPPSLEELHISNCSKELADHCRMLESKLMVSTD*