Information report for RGAe;Hwc3
Gene Details
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Functional Descriptions
- A 4-kb DNA fragment from ‘CH7’ containing the Hwc3 gene with the inserted LTR retrotransposon was able to induce hybrid weakness in hybrids with ‘CH8’ plants carrying the Hwc1 gene by genetic complementation.
Functional Keywords
Literature and News
- A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice . DOI: 10.1093/jxb/ery442 ; PMID: 30576523
- Multiple Alleles Encoding Atypical NLRs with Unique Central Tandem Repeats in Rice Confer Resistance to Xanthomonas oryzae pv. oryzae . DOI: 10.1016/j.xplc.2020.100088 ; PMID: 33367251
Gene Resources
- UniProt: Q0JA07
- EMBL: AP008210
- AlphaFoldDB: Q0JA07
- KEGG: dosa:Os04g0621900
- InterPro: IPR032675
- PANTHER: PTHR36766, PTHR36766:SF70
- SUPFAM: SSF52047, SSF52058
- Gene3D: 3.80.10.10
Sequences
cDNA Sequence
- >LOC_Os04g53060.1
ATGGGGGACTTGAATTCCAGTTTAAGGGTCCTGAAGATTGAACAGTGCCCTGTTCTGAAGGTCTTTCCACTGTTTCAGAACTCCCAGCAATTTAAAATCGAGCGAATGTCATGGTTGTCTAGTCTTACCAAGCTTACCATCAATGATTGTCCTCATTTGCATGTGCACAATCCTCTTCCGCCTTCAACTATTGTTTCGGAATTATTTATCGCTGGAGTTTCAACACTTCCAAGGGTGGAGGGGTCATCCCACGGAACATTAAGAATTGGACGTCATCCTAATGATATTTTCAGTTTTGATTCCGATGATATTTTAGAGCTAATGATATTGGATGATAAATCTCTATCATTCCATAGCTTGAGGTCCCTAACTAGATTGGTAATAGATGGTTGCAAAAACCTTATGTCTGTTTTATTTGAAAGTTTAAGGCAACTCTTGCGTTTGAAGAGTTTGGGGATATACAACTGCCCACAACTTTTCTCTTCAAATGTCCCATCGGAGCTTACCAGTGAAGACACGACAGGTGCAAATCGCAACGCCCTCCCTTCTCTCGAATGTCTTGATATTGCTTCTTGTGGAATTAATGGGAAGTGGCTATCTCTGATGCTGCAACATGCGGAGGTCCTACAGAAATTGAGTATAACCTCGTGTTGGCAGATAAGAGGGCTATCAATAGGAGAGGAAGAAAATGGTCATCCAAATCTTATGTCAGCTACAGAGGCTTCGTCGTCAGGATATCCAAGTCGAGACGAACTTTTGCACCTTCCATTAAATCTCATCCCATCTCTGAAGAAGGTAACTATTAGATTCTGCAGTTTAAGATTTTATGGAAACAAGGAAGGTTTCGCTAGATTTACCTTCCTTGAGGGCATAGCAATTTCGCGATGCCCTGAGCTGATCTCGTCCTTGGTGCATAACAACAGAAAGGATGAGCAGGTGAACGGAAGATGGCTCCTCCCGCCATCAATTGTAGAACTTGAGATTCAAGATGATAATTATCTACAAATGTTGCAGCCCTGCTTTCCAGGGAGCCTCACCCACCTGAAAAGACTACAAGTACAGGGAAACCCAAATTTAACATCTCTGCAGCTGCATTCCTGCACAGAGCTCCAAGAGTTGATAATTCAAAGCTGTAGGTCACTTAATTCTCTACAAGGCTTGCAATCACTCTGCAACCTCAGGTTGCTGCGGGCATACAGATGCCTCGGCGATCTTGGAGGAGATGAAAGGTGTCTCCTTCCGCAATCAATTGAGGAACTTGATATCGACGAGTATTTTCAAGAAACTCTGCAGCCATTCTTTCCAAGGAATCTCACCTGCCTAAAAAAATTACGAGTATCAGGCACTACAAGTTTTAAATCTCTAGAACTGATGTCATGCACTGCACTCGAACATTTGAAGATTGAAGGTTGTGCATCGCTTGCTACATTAGTGGGCTTGCAATCCCTCCACAGCCTCAGGCATTTGGAAGTATTTAGATGCCCTAGCTTGCCTCTATGTTTGGAGAGTTTGTCAGGGCAGGGCTATGAGCTATGCCCTCGATTGGAAAGGCTCCAGATCGATGACCTCTCTATCCTTACTACGTCGCTCTGCCAGCACCTCATCTCAGTCCAATTCCTAGAGCTTTACGGAGATCCATACCTTTACATTCGTGGAGTCGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTCACGTCCTTGCAAGAGCTCCAATTCAAGTCTCATGACAGTCTTGTAGATCTTCCTACAGGGCTGCATAACCTTCCTTCCCTCAAGAGGTTGAAGATCGATAATTGCAAGAGCATCATGAGGCTGCCAGAGAAGGGTCTCCCACCTTCGTTGGAAGAATTGCATATCAGCAATTGCAGCAAAGAGCTAGCTGACCATTGCAGAATGCTAGAAAGCAAGCTGATGGTATCAACTGATTGATGATGAATATGTGGATTAATTATTGGGTGGCTTGATAAGCACACCTTTTTCCACCAGCCCAAATGATACCGGCAGTTCGGCACACACCTTTCTAAGCTATACATTTAGGAGTAAGTATTTTCTGTTAAGACGTTCAAGCTGCTATACATATCACCGCCGCAGTGACCTGTTCAGGACCATTTCAAGGGGAAAATATGTAAGGCAAATTATATATGTAGTGAAAACGTGAAAACTACCGTTGGATCCATAAATGGATGTTTGATATTTGTCCATGTCACTAAAAGTAAAAAAAAAAAAACTCCCAGATTCAACTATGAGTAAAAATTTTATTGGGAGTAAAATTTGTACTATTGATGATATGGACAAATATTAGATGTTCATTTTTAAATCCAACAATAGTTTTTAGGTTTCCTCTGTATACGTGGTTGGCACTGTATATTTTCCTCCATTTCAAGTGCCATATAACTACATGTTGTTTCTCTGGATCAACTTTTTTTAAGGAAAAATATTGTAGGAGAGTATCCTACAGCGTGTGTGTCCATATAGTAAATTTGTTTGGTGCTCCATGGTGCCTGGGCACCATGATTGAAATTGAGTATATACCCAATTCAAATGAGTATGAAATTTTTTTAAATGTTTAGGTATTAACATTAACTACTTTACTAACTAGTTCAAAACAAGTTTGAACTGAATTTAAACATGTTTTTGTTAGATTTTGAATCTAGGTATATAGCATCCAAACATAAAATTAGTTAGGTATGTAAGATCATTAAAATTGTATCTTCCATATCACATCCTTCTATATTTTAATAATATCTTCCAACTAACTTTACATTTGTATTTGAAGGGATATATTTTGAATGACTTAATTTAACGGTGTTATTTATCACGATAATATTTAGAAATGAGTAAATTTTAACGGATATATTTAAAATGAGTATAAAAGCAATGCAAGTAACATCTACTACTATATTTATTCTCTACTAGTACTACTGCTGAACTATTCCTTCTCTCTTCTACTAGTACTACTACTCTACATCGAGGGAGCGGTGGCGANGGGGCNGGGTCNGGGCNGGGAGAGGGACGGGGACGGCATGGCCANGGCNGGGTGAGGGGCCGGTGATGGTCGGGCNGGGCGAGGGGCGGCNGGGACGGNACAACCGGAGAGGGCGTGGGAGAAGCTACGAGCGGCAACGATGCCTGGGACGGCGGGGGCAAAGCTGCGGGCGGCGGCGATGGCTGGGACGGCCGAGCGGCGGGGGCGACGGCGGGCGCGGGCCTCTCCGCCAAATCCGCTGCCTTTCCACCTACACCAGCGATCTCCACCGCGAGTTCCGGTACACACCTCCTTTCTTCCGTCACTTCCAGTAGTCTTGATGGTGGCATAAGTTGGATTGGAACATGGGTAGTTGGAGGATGACGTGAGGAGAGAGAACCGCCATATTTGGCTTGTGAAGGTCTCCGTTTGGAGGACCTCCAAATATGGCGTGTGTGATGGAGCCTCTGCTGGCCCCTTTTTCCCCTTCTATACGCCAAAAATGGGATGGAGGACGGGATAGCGCTACTGCTGGGGATGCTCTAAGAGACTTGCTCCGGCCCGGTACCAAATCGTTTCCAAACGTTGGATCTAACTGGGCAGGATAGATATTTTTAGATCCAACGATTGGAAACGATTTGGTATCATGAGGTACTGATACTTCAAGGTACTTTTTGATGGACCGGAGCAAATCTCAACAATACAACTGCATTGAGAAGAATAGACAGCCACTTCTTCAGATCAGAAAGCCTGGTGAACTACCAGTCAGTAAATGGCTACCGTAATCTCCACTTTTCACTTATATGTACAAAGGACACCTGCACTATCAGAACACCCACAAAGCCAGTTCACTCACTACAAACTATCTTGACTAAATCCAAGCAGATACCGACTCCTCTTAGGCCTTGTTTAGATTTCAACTTTTTTCTTCAAACTTTCAACTTTTTCGTCACATCGAACTTTTCTACACACGTAAACTTCCAACTTTTCCGTCATATCGTTCCAATTTCTTCAAACTTCCAATTTTGGCGTGGAAAAACACACCCTTAATCAACTTACAAAACACCAACACTTTGGTGTATCCACAGCACCAATCACACAAGGAAATTTACCATCCACCTACTCGTATCCTACTGTTAGATTGGCCACCTTACACCAGAGAAAGGGCATTGCCAAATTCTGAGACGCTGTCCTTTGAGCTCCCCGAATCTGAACAAATAACATAAATCAGATAGAACACAACACAAAAATTTCCATTCATCAAGAAGTTGGTTGTTCTAATTATAAAGTGGCAGTGATGAGGACCCACCGCTCGCGACCTCAGTATCCTTCTCAATCTCCACTGATTGGTAAGTTGCTGTTGGCATTTTTTTCGCCGGGCCGGCGAATAACCGGCCGATGTATATTAAGAGAAAGAGTTGCTGTTGGCATTTCATCCCCGATATCTACATACTCATCCAACTGCTCGGCCTGTGTAGTGATCTTGTCA
CDS Sequence
- >LOC_Os04g53060.1
ATGGGGGACTTGAATTCCAGTTTAAGGGTCCTGAAGATTGAACAGTGCCCTGTTCTGAAGGTCTTTCCACTGTTTCAGAACTCCCAGCAATTTAAAATCGAGCGAATGTCATGGTTGTCTAGTCTTACCAAGCTTACCATCAATGATTGTCCTCATTTGCATGTGCACAATCCTCTTCCGCCTTCAACTATTGTTTCGGAATTATTTATCGCTGGAGTTTCAACACTTCCAAGGGTGGAGGGGTCATCCCACGGAACATTAAGAATTGGACGTCATCCTAATGATATTTTCAGTTTTGATTCCGATGATATTTTAGAGCTAATGATATTGGATGATAAATCTCTATCATTCCATAGCTTGAGGTCCCTAACTAGATTGGTAATAGATGGTTGCAAAAACCTTATGTCTGTTTTATTTGAAAGTTTAAGGCAACTCTTGCGTTTGAAGAGTTTGGGGATATACAACTGCCCACAACTTTTCTCTTCAAATGTCCCATCGGAGCTTACCAGTGAAGACACGACAGGTGCAAATCGCAACGCCCTCCCTTCTCTCGAATGTCTTGATATTGCTTCTTGTGGAATTAATGGGAAGTGGCTATCTCTGATGCTGCAACATGCGGAGGTCCTACAGAAATTGAGTATAACCTCGTGTTGGCAGATAAGAGGGCTATCAATAGGAGAGGAAGAAAATGGTCATCCAAATCTTATGTCAGCTACAGAGGCTTCGTCGTCAGGATATCCAAGTCGAGACGAACTTTTGCACCTTCCATTAAATCTCATCCCATCTCTGAAGAAGGTAACTATTAGATTCTGCAGTTTAAGATTTTATGGAAACAAGGAAGGTTTCGCTAGATTTACCTTCCTTGAGGGCATAGCAATTTCGCGATGCCCTGAGCTGATCTCGTCCTTGGTGCATAACAACAGAAAGGATGAGCAGGTGAACGGAAGATGGCTCCTCCCGCCATCAATTGTAGAACTTGAGATTCAAGATGATAATTATCTACAAATGTTGCAGCCCTGCTTTCCAGGGAGCCTCACCCACCTGAAAAGACTACAAGTACAGGGAAACCCAAATTTAACATCTCTGCAGCTGCATTCCTGCACAGAGCTCCAAGAGTTGATAATTCAAAGCTGTAGGTCACTTAATTCTCTACAAGGCTTGCAATCACTCTGCAACCTCAGGTTGCTGCGGGCATACAGATGCCTCGGCGATCTTGGAGGAGATGAAAGGTGTCTCCTTCCGCAATCAATTGAGGAACTTGATATCGACGAGTATTTTCAAGAAACTCTGCAGCCATTCTTTCCAAGGAATCTCACCTGCCTAAAAAAATTACGAGTATCAGGCACTACAAGTTTTAAATCTCTAGAACTGATGTCATGCACTGCACTCGAACATTTGAAGATTGAAGGTTGTGCATCGCTTGCTACATTAGTGGGCTTGCAATCCCTCCACAGCCTCAGGCATTTGGAAGTATTTAGATGCCCTAGCTTGCCTCTATGTTTGGAGAGTTTGTCAGGGCAGGGCTATGAGCTATGCCCTCGATTGGAAAGGCTCCAGATCGATGACCTCTCTATCCTTACTACGTCGCTCTGCCAGCACCTCATCTCAGTCCAATTCCTAGAGCTTTACGGAGATCCATACCTTTACATTCGTGGAGTCGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTCACGTCCTTGCAAGAGCTCCAATTCAAGTCTCATGACAGTCTTGTAGATCTTCCTACAGGGCTGCATAACCTTCCTTCCCTCAAGAGGTTGAAGATCGATAATTGCAAGAGCATCATGAGGCTGCCAGAGAAGGGTCTCCCACCTTCGTTGGAAGAATTGCATATCAGCAATTGCAGCAAAGAGCTAGCTGACCATTGCAGAATGCTAGAAAGCAAGCTGATGGTATCAACTGATTGA
Protein Sequence
- >LOC_Os04g53060.1
MGDLNSSLRVLKIEQCPVLKVFPLFQNSQQFKIERMSWLSSLTKLTINDCPHLHVHNPLPPSTIVSELFIAGVSTLPRVEGSSHGTLRIGRHPNDIFSFDSDDILELMILDDKSLSFHSLRSLTRLVIDGCKNLMSVLFESLRQLLRLKSLGIYNCPQLFSSNVPSELTSEDTTGANRNALPSLECLDIASCGINGKWLSLMLQHAEVLQKLSITSCWQIRGLSIGEEENGHPNLMSATEASSSGYPSRDELLHLPLNLIPSLKKVTIRFCSLRFYGNKEGFARFTFLEGIAISRCPELISSLVHNNRKDEQVNGRWLLPPSIVELEIQDDNYLQMLQPCFPGSLTHLKRLQVQGNPNLTSLQLHSCTELQELIIQSCRSLNSLQGLQSLCNLRLLRAYRCLGDLGGDERCLLPQSIEELDIDEYFQETLQPFFPRNLTCLKKLRVSGTTSFKSLELMSCTALEHLKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLCLESLSGQGYELCPRLERLQIDDLSILTTSLCQHLISVQFLELYGDPYLYIRGVEVARLTDEQERALQLLTSLQELQFKSHDSLVDLPTGLHNLPSLKRLKIDNCKSIMRLPEKGLPPSLEELHISNCSKELADHCRMLESKLMVSTD*