Gene Details:

Functional Descriptions:

  • We found that the increased tillering phenotype of fine culm1 (FC1) mutants of rice is not rescued by the application of 1 microM GR24, a synthetic SL analog.
  • Treatment with a high concentration of GR24 (10 microM) causes suppression of tiller growth in wild-type plants, but is not effective on FC1 mutants, implying that proper FC1 functioning is required for SLs to inhibit bud growth.
  • Overexpression of FC1 partially rescued d3-2 defects in the tiller growth and plant height.
  • An in situ hybridization analysis showed that FC1 mRNA accumulates in axillary buds, the shoot apical meristem, young leaves, vascular tissues and the tips of crown roots.
  • We propose that FC1 acts as an integrator of multiple signaling pathways and is essential to the fine-tuning of shoot branching in rice.
  • To understand the molecular mechanisms that control culm mechanical strength, we identified a flexible culm1 (FC1) mutant by screening a rice T-DNA insertion mutant library.
  • In this study, we cloned the FLEXIBLE CULM1 (FC1) gene in rice using a T-DNA tagging approach.
  • Our results indicated that FC1 plays an important role in the biosynthesis of lignin and the control of culm strength in rice.
  • On the other hand, the expression level of FC1 is negatively regulated by cytokinin treatment.
  • FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.
  • FC1 encodes a cinnamyl-alcohol dehydrogenase and is mainly expressed in the sclerenchyma cells of the secondary cell wall and vascular bundle region.
  • In these types of cells, a deficiency of FC1 in the FC1 mutant caused a reduction in cell wall thickness, as well as a decrease in lignin.
  • Further histological and biochemical analyses revealed that the p-hydroxyphenyl and guaiacyl monomers in FC1 cell wall were reduced greatly.
  • Extracts from the first internodes and panicles of the FC1 plants exhibited drastically reduced cinnamyl-alcohol dehydrogenase activity.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os04g52280.1
    AACGAGCAGCGCGCGCACGCCGATCAGCAAGCCGCCACTGGCTACTTAAAGCCGTAGCCTGTAGCTCAGCTCCACCGCGCATAAACCTAGCCAGCTAGCAACCGACAAGCCAAGGCGACGGCAATGGCGCCGACGACGACGGCCACGGCGGCGGCGGAGCAGGCGCCGCCGCCGCAGCATACGAGGAAGGCGGTGGGGCTCGCCGCGCACGACGACTCCGGCCACCTCACACCCATCCGCATCTCGCGCAGGAAAACTGGAGATGACGACGTCGCTATAAAGGTGCTGTACTGTGGGATTTGTCACTCTGACCTGCACACCATCAAGAATGAGTGGAGAAACGCTGTCTACCCAGTTGTTGCAGGGCACGAGATCACCGGGGTGGTGACCGAGGTGGGGAAGAACGTGGCGAGGTTCAAGGCCGGCGACGAGGTCGGCGTCGGGTGCATGGTGAACACCTGCGGCGGCTGCGAGAGCTGCCGGGACGGCTGCGAGAACTACTGCTCCGGCGGGGTCGTCTTCACCTACAACTCCGTCGACCGGGACGGCACGCGCACCTACGGCGGCTACTCCGACGCGGTGGTCGTCAGCCAGCGCTTCGTCGTGCGCTTCCCCTCCTCCGCCGGCGGCGGCGCCGGCGCCGCGCTGCCGCTGGACAGCGGCGCGCCGCTGCTGTGCGCCGGGGTGACGGTGTACGCGCCGATGAGGCAGCATGGGCTGTGCGAGGCCGGGAAGCACGTCGGCGTGGTGGGGCTCGGCGGGCTCGGCCACGTCGCCGTCAAGTTCGCCAGGGCGTTCGGGATGAGGGTGACGGTGATCAGCACGTCGCCGGTGAAGAGGCAGGAGGCCCTGGAGAGGCTCGGCGCCGACGGCTTCATCGTCAGCACCAACGCCAGTGAGATGAAGGCTGCGATGGGCACCATGCATGGCATCATCAACACGGCCTCTGCAAGCACATCCATGCACTCTTACCTGGCACTCTTGAAGCCCAAGGGCAAGATGATCTTGGTTGGCCTGCCTGAGAAGCCTCTCCAGATCCCAACCTTCGCTTTGGTTGGAGGGGGCAAGATACTAGCTGGGAGCTGCATGGGGAGCATCAGTGAAACGCAGGAGATGATCGACTTCGCCGCCGAGCACGGGGTGGCCGCCGACATCGAGCTGATCGGCGCCGACGAGGTGAACACGGCCATGGAGCGCCTCGCCAAGGGCGACGTCAGGTACCGCTTCGTCGTCGACATCGGCAACACCCTCAGGTCGGATTGACTAGGGAGCTCACTGTCACTGGTCTCAGCTCTGTAGCATACCGGACCTGCAATCCTGCAAAGTAGTGCAATCTTCTTGCTACAAGACATACATATCACCTCTACTTGGTGTCAATAAATGTAGCAAAAGTGGTACATTGTTGTACTAATCTGTGTTTAATATAGCGTTGCAACACACATGTATATTGTGTAATGGAATGGAATGGGTCACTGACTCCTATCCAAGAACGAGCCATTTGCATTTTGCAATAAAGCATTACTGTACTTGTACACAGGGACAAGGGTAACGTTCTCACTCTGATGGTTGGACAAAAAAGTTATACTAGTATACAATATGCCAATATGGATTCTGCTTGAATGAAGCTAAAACGACGTACTACAGAGATAGACATCATCACCTTGACATACTAAGGGACCTGGGGATAGAGAGCGATCGGACCTCCGGCGCCGAACTTGGGAACATCACGTTGAGCCTGTGCATCAGGACGTCAGCCTTGGATGGTATCTCGTTGAGCAGGAACTGCTGCACGATCGGCTTCTTGAACCACTCGAGCACCGAGTCACCTGGCGCCCGCAGCACCACCTTGCTCACCTCAAAGGGGGACTCCAGCGACGCCAGCACCTGCGCCACCACCATCTTGAGCGTTGGTCCAGTCACTAGCTTGATGCGGCGCGGCACCACCCCATAGTAGAGCATACGCTTCCTGAACCGGTGCAGCGTGTGCACGGTTGCCACTAGCGCTGCGCCAACGGAGAGGTTTCTGACGTCCAGTGACCAGGCGATGTGCTGGTCGAAGACGATCGCCTTGGCAAACAGCTTATTCTCGTAGGCGACCTTCCAGATACAGCGGGCACGGTTCATCTGCCCCATGAGAACTAAATAGTTGAGAAGCACATTCACGAAGTACCTTGCCGCACTCTCCTCATTGTCGTAGTCGATGCCCTGGAAGAACTCCCGGACGAACGAGAGCACTGGCTTCTTGCGCTGCTCAGGCCCGGTGAACAGCCCGCACATGAAGTCATGTGCCTTGTGCTTGCTTACACTCAGGATGTCCATGATTGCCCGCTCGCGTCCCTCATCCTGGCACCGCACCAAATGTGCAAGGATCGAAGTGTAGAGTATCAAGTCCACCTTTGCTGCCCCCGCGACATATGTCTCGAGCAATGGCCGTGCTGAGTCATACAGCCCCGTCTTCATACATGACTCGAATAGCTGCCTTATGATGAAATTGTTGGTCCTTATGCCAGCGGAGCCCATGAACCGAAGCCACCGGAGTGCAAGCTCCGTCGACCCTTCCTTGATGTAAATCATCAGGAGGTCGCTGGCGGTCACCTCTATCGGGAACCCTGATGCCTTCATCTCCAGCAATACCTTTGCAGCCAAATCCAGCATCCTCTTATTCGCCAACATCATCAGCAATGCTGTAAATGTGCTAAGCCCCGGCCGTTGTCCAGCATTTGCCATCGAGTGGTACAACCGCATAGCAGCATCCACCTGCCCTGCAGAAGCATGCATCTCAACCAGACAAGCGTATGTCGCTGGCGTAGGGAAGAAGCCGGACTTCTCCATATCACCAAACAACTGTGTGGCAACATCCAACCTCCCGGACCGTGCATTCGCCTCGACAACCATGGTGTACAGACCAAAGCTTGGACGGAGCCCTCCCCTCCTCATCTCCTCCCAGAGCTCCATCCCTGCATCCAACTTCCCAGCCCTCACCAGCCCCTCCACCACGGCTGTGCTCACCGCCGGGCTTGCACGGTGCCCCACCGCCACCATCTCCCTGTACATCCCCATAGCAGCATCGAGCCTCCCTGCTTTTGCCAGCACGTCCACCAGCACGCCGTACATCCCAGCCGACGCCCGCCCAATCCCCTCCCTCTTCCTCATTTCATCAAACATCTTGCGTGCGGCATCTATCCTCCCGGCGCGCGCAAGGGCTGGCACCACGAGCTCGTAGGTTCCCTCGTCGAGCGCGCACCCCGACGATGACATTTCGTCGAGCACCTCAAAGGCC
CDS Sequence
  • >LOC_Os04g52280.1
    ATGGCGCCGACGACGACGGCCACGGCGGCGGCGGAGCAGGCGCCGCCGCCGCAGCATACGAGGAAGGCGGTGGGGCTCGCCGCGCACGACGACTCCGGCCACCTCACACCCATCCGCATCTCGCGCAGGAAAACTGGAGATGACGACGTCGCTATAAAGGTGCTGTACTGTGGGATTTGTCACTCTGACCTGCACACCATCAAGAATGAGTGGAGAAACGCTGTCTACCCAGTTGTTGCAGGGCACGAGATCACCGGGGTGGTGACCGAGGTGGGGAAGAACGTGGCGAGGTTCAAGGCCGGCGACGAGGTCGGCGTCGGGTGCATGGTGAACACCTGCGGCGGCTGCGAGAGCTGCCGGGACGGCTGCGAGAACTACTGCTCCGGCGGGGTCGTCTTCACCTACAACTCCGTCGACCGGGACGGCACGCGCACCTACGGCGGCTACTCCGACGCGGTGGTCGTCAGCCAGCGCTTCGTCGTGCGCTTCCCCTCCTCCGCCGGCGGCGGCGCCGGCGCCGCGCTGCCGCTGGACAGCGGCGCGCCGCTGCTGTGCGCCGGGGTGACGGTGTACGCGCCGATGAGGCAGCATGGGCTGTGCGAGGCCGGGAAGCACGTCGGCGTGGTGGGGCTCGGCGGGCTCGGCCACGTCGCCGTCAAGTTCGCCAGGGCGTTCGGGATGAGGGTGACGGTGATCAGCACGTCGCCGGTGAAGAGGCAGGAGGCCCTGGAGAGGCTCGGCGCCGACGGCTTCATCGTCAGCACCAACGCCAGTGAGATGAAGGCTGCGATGGGCACCATGCATGGCATCATCAACACGGCCTCTGCAAGCACATCCATGCACTCTTACCTGGCACTCTTGAAGCCCAAGGGCAAGATGATCTTGGTTGGCCTGCCTGAGAAGCCTCTCCAGATCCCAACCTTCGCTTTGGTTGGAGGGGGCAAGATACTAGCTGGGAGCTGCATGGGGAGCATCAGTGAAACGCAGGAGATGATCGACTTCGCCGCCGAGCACGGGGTGGCCGCCGACATCGAGCTGATCGGCGCCGACGAGGTGAACACGGCCATGGAGCGCCTCGCCAAGGGCGACGTCAGGTACCGCTTCGTCGTCGACATCGGCAACACCCTCAGGTCGGATTGA
Protein Sequence
  • >LOC_Os04g52280.1
    MAPTTTATAAAEQAPPPQHTRKAVGLAAHDDSGHLTPIRISRRKTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVYPVVAGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVSTNASEMKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNTLRSD*