Information report for COLD1
Gene Details
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Functional Descriptions
- COLD1 Confers Chilling Tolerance in Rice.
- Here, we identify the quantitative trait locus COLD1 that confers chilling tolerance in japonica rice.
- We further identify that a SNP in COLD1, SNP2, originated from Chinese Oryza rufipogon, is responsible for the ability of COLD(jap/ind) to confer chilling tolerance, supporting the importance of COLD1 in plant adaptation.
- COLD1 encodes a regulator of G-protein signaling that localizes on plasma membrane and endoplasmic reticulum (ER).
Functional Keywords
Literature and News
Sequences
cDNA Sequence
- >LOC_Os04g51180.2
AGATCCATCTCCGGCTCCGGCGCCGGCGCGCGCGCGAGGCGTGGAGGTGGGGTGGGGGAGGGGGGAATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAACCTACATACTATTTCCCCCCTTTCCAGGCAGGTTCTGTTGATCCAGTAACCATGACAATTACCATCTTCTTGAGGCATTTTGACATTGGTATTGATGTCACTCTTTTATCACAGGTACACATGCTAAAATTAAAAGGTGAACAATTCCAGAATCGAGAATAAATTCATTATTACTCTGAACTGCAGTTCTCTGTACATTTGATGTTAATTGGAACCGCTATGTAAGTTGTAAGCAATTTTCAAAATTCCCATAAAATAGGTATACAGATATTTTTTGGCATGTCCTTTGCGTTTTGGCTCTTTCCATAAAGTACCATATGTAGATTAAACATTAATTTTGAGGTGCTTTGAATTGGCTTGGTTTGACTTTCATGCAACCTGGTTACCTCCTTTCCTTTTTGCTTCTTTGTTCATGTTCTATAGCTTACATGTGTCCTGCCTGTTCACTTTTTGTTGCAGTATATATCTCTCATATTTATCGGGATGTTGGTTGTCATATCTGTTCGAGGTTTCTTGGCAAATGTTATGAAGGTGAGTTATTTCTTTCAGTTATCTATACATACAGCTGTTAGTTGTTACTGTACCCTTGTTAATAGAGCATTAGAACGCAATTCTATGGTGTCTCACTTTCTATGCAGTTCTTCTTTGCTGTTTCTAGAGTTGGGAGTGGTTCAACAACCAATGTTGTCCTTTTTCTATCTGAGATCATGGGAATGTACTTCATATCATCTATTCTTCTCATAAGGAAAAGCCTGGCAAATGAGTATAGGGTGATCATTACAGATGTTTTGGGTGGTGATATCCAGTTTGACTTTTACCACCGCTGGTTTGATGCTATATTTGTGGCTAGTGCATTTCTGTCCTTGCTTCTGATTTCTGCCCAATACACCTCCCGGCAAACAGACAAGCACCCAATTGATTGATGCTTTTGTACCATTTGTGCATAGTGTTCTTTTAACCACTTTGTCCAAGGTTGACCCATTCATTCTACCAGTTTCCAAAGGTTGTCGTTTCTCCATGGACTTCCATATACAGTTACAGAACATAATACATCAGTTAACTTGAAGGTGTCTCCTTGTTTTGGAGTATGTTTCCTGACGTTGAATCATGGTGAAACAGTTTCTCCATATGCAAGTCATTAGGAATGCTTTGCATCGTGATGATGCAGAACTGCAAATGGGGCCGGTTGTAATGTTGTGTCCACATGATAATTGTTTTTTGAAGACAAGAGGATGTCCTTTCTTAGGAATGAAGTATTGACTATGTAAAATAGCTTGAGAATAGCGTTGCTAGCATGATATGAAGTCGGTGTATCTCCCACAATTCTTTTTTGGCTATTACTACTACATGTGTAGTGTAACATTTGCCCAACTTCAAAAGGTAGATATTATTCATGTGACAGCAATCTCTTCGTTAGTACTCTCTCCATCAAAAAAAAAAAAGTACTCTCTCTATCAT - >LOC_Os04g51180.1
AGATCCATCTCCGGCTCCGGCGCCGGCGCGCGCGCGAGGCGTGGAGGTGGGGTGGGGGAGGGGGGAATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAACCTACATACTATTTCCCCCCTTTCCAGGCAGGTTCTGTTGATCCAGTAACCATGACAATTACCATCTTCTTGAGGCATTTTGACATTGGTATTGATGTCACTCTTTTATCACAGGTACACATGCTAAAATTAAAAGGTGAACAATTCCAGAATCGAGAATAAATTCATTATTACTCTGAACTGCAGTTCTCTGTACATTTGATGTTAATTGGAACCGCTATGTAAGTTGTAAGCAATTTTCAAAATTCCCATAAAATAGGTATACAGATATTTTTTGGCATGTCCTTTGCGTTTTGGCTCTTTCCATAAAGTACCATATGTAGATTAAACATTAATTTTGAGGTGCTTTGAATTGGCTTGGTTTGACTTTCATGCAACCTGGTTACCTCCTTTCCTTTTTGCTTCTTTGTTCATGTTCTATAGCTTACATGTGTCCTGCCTGTTCACTTTTTGTTGCAGTATATATCTCTCATATTTATCGGGATGTTGGTTGTCATATCTGTTCGAGGTTTCTTGGCAAATGTTATGAAGGTGAGTTATTTCTTTCAGTTATCTATACATACAGCTGTTAGTTGTTACTGTACCCTTGTTAATAGAGCATTAGAACGCAATTCTATGGTGTCTCACTTTCTATGCAGTTCTTCTTTGCTGTTTCTAGAGTTGGGAGTGGTTCAACAACCAATGTTGTCCTTTTTCTATCTGAGATCATGGGAATGTACTTCATATCATCTATTCTTCTCATAAGGAAAAGCCTGGCAAATGAGTATAGGGTGATCATTACAGATGTTTTGGGTGGTGATATCCAGTTTGACTTTTACCACCGCTGGTTTGATGCTATATTTGTGGCTAGTGCATTTCTGTCCTTGCTTCTGATTTCTGCCCAATACACCTCCCGGCAAACAGACAAGCACCCAATTGATTGATGCTTTTGTACCATTTGTGCATAGTGTTCTTTTAACCACTTTGTCCAAGGTTGACCCATTCATTCTACCAGTTTCCAAAGGTTGTCGTTTCTCCATGGACTTCCATATACAGTTACAGAACATAATACATCAGTTAACTTGAAGGTGTCTCCTTGTTTTGGAGTATGTTTCCTGACGTTGAATCATGGTGAAACAGTTTCTCCATATGCAAGTCATTAGGAATGCTTTGCATCGTGATGATGCAGAACTGCAAATGGGGCCGGTTGTAATGTTGTGTCCACATGATAATTGTTTTTTGAAGACAAGAGGATGTCCTTTCTTAGGAATGAAGTATTGACTATGTAAAATAGCTTGAGAATAGCGTTGCTAGCATGATATGAAGTCGGTGTATCTCCCACAATTCTTTTTTGGCTATTACTACTACATGTGTAGTGTAACATTTGCCCAACTTCAAAAGGTAGATATTATTCATGTGACAGCAATCTCTTCGTTAGTACTCTCTCCATCAAAAAAAAAAAAGTACTCTCTCTATCAT
CDS Sequence
- >LOC_Os04g51180.2
ATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAA - >LOC_Os04g51180.1
ATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAA
Protein Sequence
- >LOC_Os04g51180.2
MGWGAVVYGGGVVGASLVGLGWAGLWFLNRRLYKEYEERRALVQILFGLVFAFSCNLFQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYLLLRNSGVRRERALLVAALFLLVFLYGFWRMGIHFPMPSPEKGFFTMPQLVSRIGVIGVSVMAVLSGFGAVNLPYSYLSLFIREIDEKDIKTLERQLMQSMETCIAKKKKIVLSKMEMERIQGSEEKLKARSFLKRIVGTVVRSVQEDQTEQDIKSLDAEVQALEELSKQLFLEIYELRQAKIAAAFSRTWRGHAQNLLGYALSVYCVYKMLKSLQSVVFKEVKSLLSFVKLKPIACFFFPNSGNFHC* - >LOC_Os04g51180.1
MGWGAVVYGGGVVGASLVGLGWAGLWFLNRRLYKEYEERRALVQILFGLVFAFSCNLFQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYLLLRNSGVRRERALLVAALFLLVFLYGFWRMGIHFPMPSPEKGFFTMPQLVSRIGVIGVSVMAVLSGFGAVNLPYSYLSLFIREIDEKDIKTLERQLMQSMETCIAKKKKIVLSKMEMERIQGSEEKLKARSFLKRIVGTVVRSVQEDQTEQDIKSLDAEVQALEELSKQLFLEIYELRQAKIAAAFSRTWRGHAQNLLGYALSVYCVYKMLKSLQSVVFKEVKSLLSFVKLKPIACFFFPNSGNFHC*