Gene Details:
- MSU gene ID: LOC_Os04g51180
- RAPdb gene ID: Os04g0600800
- Gene Symbol: COLD1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- COLD1 Confers Chilling Tolerance in Rice.
- Here, we identify the quantitative trait locus COLD1 that confers chilling tolerance in japonica rice.
- We further identify that a SNP in COLD1, SNP2, originated from Chinese Oryza rufipogon, is responsible for the ability of COLD(jap/ind) to confer chilling tolerance, supporting the importance of COLD1 in plant adaptation.
- COLD1 encodes a regulator of G-protein signaling that localizes on plasma membrane and endoplasmic reticulum (ER).
Function-related keywords:
Literature:
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os04g51180.2
AGATCCATCTCCGGCTCCGGCGCCGGCGCGCGCGCGAGGCGTGGAGGTGGGGTGGGGGAGGGGGGAATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAACCTACATACTATTTCCCCCCTTTCCAGGCAGGTTCTGTTGATCCAGTAACCATGACAATTACCATCTTCTTGAGGCATTTTGACATTGGTATTGATGTCACTCTTTTATCACAGGTACACATGCTAAAATTAAAAGGTGAACAATTCCAGAATCGAGAATAAATTCATTATTACTCTGAACTGCAGTTCTCTGTACATTTGATGTTAATTGGAACCGCTATGTAAGTTGTAAGCAATTTTCAAAATTCCCATAAAATAGGTATACAGATATTTTTTGGCATGTCCTTTGCGTTTTGGCTCTTTCCATAAAGTACCATATGTAGATTAAACATTAATTTTGAGGTGCTTTGAATTGGCTTGGTTTGACTTTCATGCAACCTGGTTACCTCCTTTCCTTTTTGCTTCTTTGTTCATGTTCTATAGCTTACATGTGTCCTGCCTGTTCACTTTTTGTTGCAGTATATATCTCTCATATTTATCGGGATGTTGGTTGTCATATCTGTTCGAGGTTTCTTGGCAAATGTTATGAAGGTGAGTTATTTCTTTCAGTTATCTATACATACAGCTGTTAGTTGTTACTGTACCCTTGTTAATAGAGCATTAGAACGCAATTCTATGGTGTCTCACTTTCTATGCAGTTCTTCTTTGCTGTTTCTAGAGTTGGGAGTGGTTCAACAACCAATGTTGTCCTTTTTCTATCTGAGATCATGGGAATGTACTTCATATCATCTATTCTTCTCATAAGGAAAAGCCTGGCAAATGAGTATAGGGTGATCATTACAGATGTTTTGGGTGGTGATATCCAGTTTGACTTTTACCACCGCTGGTTTGATGCTATATTTGTGGCTAGTGCATTTCTGTCCTTGCTTCTGATTTCTGCCCAATACACCTCCCGGCAAACAGACAAGCACCCAATTGATTGATGCTTTTGTACCATTTGTGCATAGTGTTCTTTTAACCACTTTGTCCAAGGTTGACCCATTCATTCTACCAGTTTCCAAAGGTTGTCGTTTCTCCATGGACTTCCATATACAGTTACAGAACATAATACATCAGTTAACTTGAAGGTGTCTCCTTGTTTTGGAGTATGTTTCCTGACGTTGAATCATGGTGAAACAGTTTCTCCATATGCAAGTCATTAGGAATGCTTTGCATCGTGATGATGCAGAACTGCAAATGGGGCCGGTTGTAATGTTGTGTCCACATGATAATTGTTTTTTGAAGACAAGAGGATGTCCTTTCTTAGGAATGAAGTATTGACTATGTAAAATAGCTTGAGAATAGCGTTGCTAGCATGATATGAAGTCGGTGTATCTCCCACAATTCTTTTTTGGCTATTACTACTACATGTGTAGTGTAACATTTGCCCAACTTCAAAAGGTAGATATTATTCATGTGACAGCAATCTCTTCGTTAGTACTCTCTCCATCAAAAAAAAAAAAGTACTCTCTCTATCAT - >LOC_Os04g51180.1
AGATCCATCTCCGGCTCCGGCGCCGGCGCGCGCGCGAGGCGTGGAGGTGGGGTGGGGGAGGGGGGAATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAACCTACATACTATTTCCCCCCTTTCCAGGCAGGTTCTGTTGATCCAGTAACCATGACAATTACCATCTTCTTGAGGCATTTTGACATTGGTATTGATGTCACTCTTTTATCACAGGTACACATGCTAAAATTAAAAGGTGAACAATTCCAGAATCGAGAATAAATTCATTATTACTCTGAACTGCAGTTCTCTGTACATTTGATGTTAATTGGAACCGCTATGTAAGTTGTAAGCAATTTTCAAAATTCCCATAAAATAGGTATACAGATATTTTTTGGCATGTCCTTTGCGTTTTGGCTCTTTCCATAAAGTACCATATGTAGATTAAACATTAATTTTGAGGTGCTTTGAATTGGCTTGGTTTGACTTTCATGCAACCTGGTTACCTCCTTTCCTTTTTGCTTCTTTGTTCATGTTCTATAGCTTACATGTGTCCTGCCTGTTCACTTTTTGTTGCAGTATATATCTCTCATATTTATCGGGATGTTGGTTGTCATATCTGTTCGAGGTTTCTTGGCAAATGTTATGAAGGTGAGTTATTTCTTTCAGTTATCTATACATACAGCTGTTAGTTGTTACTGTACCCTTGTTAATAGAGCATTAGAACGCAATTCTATGGTGTCTCACTTTCTATGCAGTTCTTCTTTGCTGTTTCTAGAGTTGGGAGTGGTTCAACAACCAATGTTGTCCTTTTTCTATCTGAGATCATGGGAATGTACTTCATATCATCTATTCTTCTCATAAGGAAAAGCCTGGCAAATGAGTATAGGGTGATCATTACAGATGTTTTGGGTGGTGATATCCAGTTTGACTTTTACCACCGCTGGTTTGATGCTATATTTGTGGCTAGTGCATTTCTGTCCTTGCTTCTGATTTCTGCCCAATACACCTCCCGGCAAACAGACAAGCACCCAATTGATTGATGCTTTTGTACCATTTGTGCATAGTGTTCTTTTAACCACTTTGTCCAAGGTTGACCCATTCATTCTACCAGTTTCCAAAGGTTGTCGTTTCTCCATGGACTTCCATATACAGTTACAGAACATAATACATCAGTTAACTTGAAGGTGTCTCCTTGTTTTGGAGTATGTTTCCTGACGTTGAATCATGGTGAAACAGTTTCTCCATATGCAAGTCATTAGGAATGCTTTGCATCGTGATGATGCAGAACTGCAAATGGGGCCGGTTGTAATGTTGTGTCCACATGATAATTGTTTTTTGAAGACAAGAGGATGTCCTTTCTTAGGAATGAAGTATTGACTATGTAAAATAGCTTGAGAATAGCGTTGCTAGCATGATATGAAGTCGGTGTATCTCCCACAATTCTTTTTTGGCTATTACTACTACATGTGTAGTGTAACATTTGCCCAACTTCAAAAGGTAGATATTATTCATGTGACAGCAATCTCTTCGTTAGTACTCTCTCCATCAAAAAAAAAAAAGTACTCTCTCTATCAT
CDS Sequence
- >LOC_Os04g51180.2
ATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAA - >LOC_Os04g51180.1
ATGGGTTGGGGCGCGGTGGTGTACGGTGGCGGCGTGGTGGGGGCGTCGCTGGTGGGGCTCGGCTGGGCGGGGCTGTGGTTCCTCAACCGGCGGCTGTACAAGGAGTACGAGGAGCGGCGGGCGCTGGTGCAGATCCTCTTCGGCCTCGTCTTCGCCTTCTCCTGCAACCTCTTCCAGCTCGTCCTCTTCGAGATCCTCCCCGTCCTCTCCAAGCACGCCCGCTTCCTCAACTGGCACCTCGACCTCTTCTGCCTCATCCTCCTCCTCGTCTTCGTCCTCCCCTACTACCACTGCTACCTGCTGCTGCGCAACTCAGGGGTGCGGAGGGAGCGGGCTCTGCTCGTCGCGGCGCTGTTCCTGCTGGTCTTCCTCTATGGCTTCTGGCGCATGGGGATTCATTTCCCCATGCCTTCTCCGGAAAAAGGGTTTTTCACGATGCCCCAGTTGGTTAGTAGGATTGGCGTGATTGGAGTAAGTGTCATGGCTGTTCTTTCTGGTTTTGGTGCCGTCAATCTGCCTTACAGCTATCTGTCACTGTTTATCAGGGAAATTGATGAAAAGGACATCAAAACATTGGAAAGGCAGCTCATGCAATCCATGGAGACATGCATCGCTAAGAAAAAGAAAATTGTTCTGTCCAAAATGGAGATGGAGAGGATTCAAGGATCAGAAGAGAAGCTAAAAGCCAGATCATTTCTAAAGCGTATCGTTGGGACAGTTGTTCGATCTGTGCAAGAAGATCAAACTGAGCAGGATATCAAAAGCTTGGATGCAGAGGTCCAGGCACTAGAAGAACTTTCCAAACAACTATTTCTTGAGATATATGAACTCCGTCAAGCAAAGATAGCTGCTGCGTTTTCTCGAACTTGGAGAGGCCATGCTCAGAATCTACTAGGATATGCTTTGTCAGTGTATTGTGTTTATAAGATGCTCAAGTCCTTGCAGAGTGTTGTCTTTAAAGAGGTAAAATCACTTCTTTCCTTCGTCAAACTCAAACCAATTGCTTGTTTCTTTTTTCCTAATTCTGGAAATTTCCATTGTTAA
Protein Sequence
- >LOC_Os04g51180.2
MGWGAVVYGGGVVGASLVGLGWAGLWFLNRRLYKEYEERRALVQILFGLVFAFSCNLFQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYLLLRNSGVRRERALLVAALFLLVFLYGFWRMGIHFPMPSPEKGFFTMPQLVSRIGVIGVSVMAVLSGFGAVNLPYSYLSLFIREIDEKDIKTLERQLMQSMETCIAKKKKIVLSKMEMERIQGSEEKLKARSFLKRIVGTVVRSVQEDQTEQDIKSLDAEVQALEELSKQLFLEIYELRQAKIAAAFSRTWRGHAQNLLGYALSVYCVYKMLKSLQSVVFKEVKSLLSFVKLKPIACFFFPNSGNFHC* - >LOC_Os04g51180.1
MGWGAVVYGGGVVGASLVGLGWAGLWFLNRRLYKEYEERRALVQILFGLVFAFSCNLFQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYLLLRNSGVRRERALLVAALFLLVFLYGFWRMGIHFPMPSPEKGFFTMPQLVSRIGVIGVSVMAVLSGFGAVNLPYSYLSLFIREIDEKDIKTLERQLMQSMETCIAKKKKIVLSKMEMERIQGSEEKLKARSFLKRIVGTVVRSVQEDQTEQDIKSLDAEVQALEELSKQLFLEIYELRQAKIAAAFSRTWRGHAQNLLGYALSVYCVYKMLKSLQSVVFKEVKSLLSFVKLKPIACFFFPNSGNFHC*