Gene Details:
- MSU gene ID: LOC_Os04g42095 ,LOC_Os04g42090
- RAPdb gene ID: Os04g0498600
- Gene Symbol: OsSAMDC
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- These results suggest that the induction of the OsSAMDC gene in response to cold may be used as a molecular marker for the ability of rice seedlings to withstand exposure to low temperatures.
- We also analyzed the response of OsSAMDC to various abiotic stress treatments and plant hormones.
- Upon exposure to cold stress (5 degrees C) the level of OsSAMDC transcripts in the cold-resistant Yukihikari genotype continued to increase for up to 72 h.
Function-related keywords:
Literature:
- Differential expression of an S-adenosyl-L-methionine decarboxylase gene involved in polyamine biosynthesis under low temperature stress in japonica and indica rice genotypes . DOI: 10.1007/s00438-003-0963-7 ; PMID: 14727183
Related News:
Gene Resources:
- NCBI ID: Y07766
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os04g42095.1
ATGGAGTCAAAGGGTGGCAAAAAGAAGTCTAGCAGTAGTCGTTCCTTGATGTATGAAGCTCCCCTTGGCTACAGCATTGAGGACGTTCGACCTGCCGGAGGCGTGAAGAAGTTCCAGTCTGCTGCTTACTCCAACTGTTCTGACCAACCTGCTCCAATGGGTGTCTTGTCTGCTGCTGACCCTCCCCCAGTCTCAGCAATTGGGTTTGAGGGCTATGAGAAGCGCCTTGAGATCACTTTCTCTGAGGCACCTGTCTTTGCTGACCCTGATGGTCGGGGTTTGCGCGCCCTCTCCAGGGCCCAGATTGACTCTGTTCTGGATCTTGCACGGTGCACCATTGTGTCCGAGCTGTCCAACAAGGACTTTGACTCCTATGTCCTCTCTGAGTCCAGCCTGTTTATCTATTCTGATAAGATTGTGATTAAGACCTGTGGGACTACAAAGCTCCTGCTCACAATTCCAAGGATTCTTGAGCTTGCTGAAGGGCTTTCTATGCCACTTGCTGCTGTGAAGTACTCCCGCGGGATGTTCATCTTCCCCAGTGCACAGCCTGCTCCCCACAGGAGCTTCTCTGAGGAAGTTGCTGTCCTCAACCGCTACTTTGGCCATCTGAAATCTGGTGGTAATGCTTATGTGATTGGAGATCCAGCAAAGCCTGGCCAGAAGTGGCATATCTACTATGCTACTCAGCACCCGGAGCAACCTATGGTTACCCTTGAAATGTGCATGACCGGACTGGACAAGGAGAAAGCTTCAGTCTTTTTCAAGACTTCTGCTGATGGTCACACATCATGTGCTAAGGAAATGACAAAACTCTCGGGCATCTCTGACATTATCCCAGAGATGGAGATCTGTGACTTTGACTTCGAACCCTGCGGCTACTCCATGAATGCAATCCATGGCTCAGCGTTTTCTACCATTCATGTGACCCCTGAGGATGGCTTCAGCTACGCCAGTTATGAGGTCGTGGGCTTCGACGCCTCTACTCTTGCTTATGGCGACCTGGTGAAGAGGGTCCTCAGGTGCTTTGGCCCTTCGGAGTTCTCTGTTGCTGTTACCATCTTTGGTGGGCATGGTCATGCTGGAACATGGGCAAAGGAGCTCAATGCTGATGCTTACAAATGCAACAACATGGTAGAGCAGGAGCTGCCCTGTGGTGGCCTCCTCATCTACCAGAGCTTCGACGCTACTGAAGACGTACCTGTTGCTGTTGGGTCGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAGAATATGGTGAACCCTGCTCCTGTTAAGGAAGGTAAACTGGGCAATCTTCTCCCCTGGGGAGAGGATGCGTTGGAGGAGAATGATGGAGTGTTTGATGAGTAA
CDS Sequence
- >LOC_Os04g42095.1
ATGGAGTCAAAGGGTGGCAAAAAGAAGTCTAGCAGTAGTCGTTCCTTGATGTATGAAGCTCCCCTTGGCTACAGCATTGAGGACGTTCGACCTGCCGGAGGCGTGAAGAAGTTCCAGTCTGCTGCTTACTCCAACTGTTCTGACCAACCTGCTCCAATGGGTGTCTTGTCTGCTGCTGACCCTCCCCCAGTCTCAGCAATTGGGTTTGAGGGCTATGAGAAGCGCCTTGAGATCACTTTCTCTGAGGCACCTGTCTTTGCTGACCCTGATGGTCGGGGTTTGCGCGCCCTCTCCAGGGCCCAGATTGACTCTGTTCTGGATCTTGCACGGTGCACCATTGTGTCCGAGCTGTCCAACAAGGACTTTGACTCCTATGTCCTCTCTGAGTCCAGCCTGTTTATCTATTCTGATAAGATTGTGATTAAGACCTGTGGGACTACAAAGCTCCTGCTCACAATTCCAAGGATTCTTGAGCTTGCTGAAGGGCTTTCTATGCCACTTGCTGCTGTGAAGTACTCCCGCGGGATGTTCATCTTCCCCAGTGCACAGCCTGCTCCCCACAGGAGCTTCTCTGAGGAAGTTGCTGTCCTCAACCGCTACTTTGGCCATCTGAAATCTGGTGGTAATGCTTATGTGATTGGAGATCCAGCAAAGCCTGGCCAGAAGTGGCATATCTACTATGCTACTCAGCACCCGGAGCAACCTATGGTTACCCTTGAAATGTGCATGACCGGACTGGACAAGGAGAAAGCTTCAGTCTTTTTCAAGACTTCTGCTGATGGTCACACATCATGTGCTAAGGAAATGACAAAACTCTCGGGCATCTCTGACATTATCCCAGAGATGGAGATCTGTGACTTTGACTTCGAACCCTGCGGCTACTCCATGAATGCAATCCATGGCTCAGCGTTTTCTACCATTCATGTGACCCCTGAGGATGGCTTCAGCTACGCCAGTTATGAGGTCGTGGGCTTCGACGCCTCTACTCTTGCTTATGGCGACCTGGTGAAGAGGGTCCTCAGGTGCTTTGGCCCTTCGGAGTTCTCTGTTGCTGTTACCATCTTTGGTGGGCATGGTCATGCTGGAACATGGGCAAAGGAGCTCAATGCTGATGCTTACAAATGCAACAACATGGTAGAGCAGGAGCTGCCCTGTGGTGGCCTCCTCATCTACCAGAGCTTCGACGCTACTGAAGACGTACCTGTTGCTGTTGGGTCGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAGAATATGGTGAACCCTGCTCCTGTTAAGGAAGGTAAACTGGGCAATCTTCTCCCCTGGGGAGAGGATGCGTTGGAGGAGAATGATGGAGTGTTTGATGAGTAA
Protein Sequence
- >LOC_Os04g42095.1
MESKGGKKKSSSSRSLMYEAPLGYSIEDVRPAGGVKKFQSAAYSNCSDQPAPMGVLSAADPPPVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHPEQPMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAVTIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAPVKEGKLGNLLPWGEDALEENDGVFDE*