Information report for RHS1
Gene Details
|
|
Functional Descriptions
- Interestingly, the basal expression levels of QSH1 and SHAT1 genes (transcription factors that regulate seed-pod shattering in rice) were significantly lower in these plants than in wild-type plants; however, nitrosative stress negatively regulated the expression of QSH1 and SHAT1 in both WT and RHS1 plants, but positively regulated QSH4 expression in RHS1 plants alone.
- The absence of RHS1, which encodes a putative armadillo/beta-catenin repeat family protein, resulted in high sensitivity of the RHS1 plants to nitrosative stress.
- The expression of CPL1 (a negative regulator of seed shattering in rice) was significantly lower in RHS1 plants, and we found that CPL1 expression was correlated with S-nitrosothiol (SNO) alteration in RHS1.
- Interestingly noe1, a rice mutant with high SNO levels, exhibited low seed shattering, whereas RHS1 resulted in low SNO levels with high seed shattering.
- A Novel RHS1 Locus in Rice Attributes Seed-Pod Shattering by the Regulation of Endogenous S-Nitrosothiols.
- The knockout mutant line RHS1 exhibited a significantly high shattering of grains in comparison to the wild-type plants.
- Therefore, RHS1 is a novel gene that negatively regulates the shattering trait in rice via regulation of endogenous SNO levels.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q7X741
- EMBL: AP014960
- AlphaFoldDB: Q7X741
- EnsemblPlants: Os04t0489800-01
- Gramene: Os04t0489800-01
- Orthologous matrix: KCTRQNS
- InterPro: IPR000225, IPR003613, IPR011989
- PANTHER: PTHR23315, PTHR23315:SF242
- SUPFAM: SSF48371, SSF57850
- PROSITE: PS51698
- Gene3D: 1.25.10.10, 3.30.40.10
- OrthoDB: Q7X741
- SWISS-MODEL: Q7X741
- Conserved Domain Database: cd16664
- eggNOG: KOG0167
Sequences
cDNA Sequence
- >LOC_Os04g41250.1
TCTCCCAAAACAAATCAATTTCCTTCCTCCCGACCGAGCAAGGGGGCGAAAGGACGAGCTACGGACCGAGCCATGGAGGAATTCAAGGCTCGCTCCTTCGTCGCCTTGTCTCCCTCGGGTGAAATTTCATCAATATAGGAAAATAGATTATACCATCAGTTTTTGCACACGCGGATGAAATTTGACTAGGAGAGGCACCATGGAGAAAGTCGAGGTCGATGGGAACTTCATTGGTACGGGTAATTGGAAGCTGCATGGAGCACTATGTAAGCAACTTCACAAAGTAGTTCTTGAAGTATTGGATGTTATTCCTGTCCTTGAAGCTACAAGGCCTGGAAACAGTTCTGGACTTCTTGCATTGAGTTCCTTGCGCATAGCTGTTGAGAAGGCCAAGAATCTACTTCAGTATTGCTCAGAGTGCAGCAAGCTATACTTGGCCTTTACAGCAGAAAATGTCCTGGCAAAATTTGAGAAAGCAAGATATGCGCTTCTGGAAAGTCTTCACCAATTGGAAGAAACACTTCCAGAAGCAGCCAGTTCTCAGATACTAGATATCGCAAAAGATCTGGAGAAAGCAGTTTTTACCTTGGATCTGATTGAAAAGCAAGCTGGTGTGGATGTGAATCAATTAGTTCAGAATGAGGCAAAATCCAATGGCTTTCTTCATGACAATGAACTTGAATTTTTCCGACAAACTGCATTTCGGGTCGGCGTTGCGTCATCGGCAACAGCTCTTACCGAGAGAAGAGCACTTAGAAGGCTTCTTGAGAGGGCTCATGCAGAGGAAGACATAAAGAAAGAATCAGTTGCATCTTATCTACTGCACCTAATGAGGAAATACTCAAGCATTTTTAGGAGCGAAACGACGGATTTCACCAACACATCCATGTGCTCAAGCCCTTCTTGCTCTTCCCGTTCATTGTCCAGCTCGATTGATCTCCATGGAAATGGTCATGTTATTGAAAAGTCGATATCTAGGGTTGGCTCCTTCAATCTCAGGCAGATCAAAGGCTTATCAGGTAGCATGCCATTGCCACCTGAGGAACTAAGGTGCCCGATCTCCTTGCAACTCATGCATGACCCTGTTATTATCGCATCTGGTCAGACATATGAGCGGGCTTGCATTGAGAAATGGTTTAGCAGCGGCAACACAACCTGCCCAAAGACTCGGAATGAATTATCCCAGCTCTCCATGACGCCCAACTATTGCATCAAGGGTTTGATAGCTTCATGGTGCGAGCAGAACGGGGTTCTAGTTCCATCGGCGCCGCCTGATTCTCCCAAGCTCAAGTACCTGAGGATATCATCCTTGAATAGTAGCAAATGTCTTGTGACCAATGGCGTTAGCACGGTCTTGTTTGAAGACACATGCGCGGAGGATGATATTAAGGATGGTGGTAAAGTTGCTTCGGAGGAGTGCACTCGGCAGAACTCCGGAGAGGCTCCATCTGAGATATGTGAAGTTGATCAGGCCTCACCAGAAAAACATCCTCATGAGAACTCCGAGAAGGTAGCAGAGGCGACATGTGAGCTTTGGCTGCGTGTGCTGAGCAAGGACGACGATGAGTGTGTCGACGAGCAACGTGAGGTGATCGAGCAGATTAGATTCCTTTTGAAGGATGACAACGAGCTTAGGAAATACGCGGGTGCTAATGGTATTACCGAGCTACTCATCCACTTTGTGAAGAAGGCAGTCTGCAGAGATGATGTTCAGTGCCAGGTGGTTGGAACAATGGCTCTGTTCAACCTTGCTGTCAGCAATGATAGGAACAAGAAACAACTTCTCTCAGGTGGAGTCCTCCCCTTGATGGAGCAGATGATACAGAAGCCTGAAACCTACGAGGCTGCCGTCGCAATGTACCTGAACATTTCCTGCCTCGCCGAGGCGCAGGCGATCATCGGGCAGAGCGAGGCCGCGCCTCTCCTGATCAAGGGCCTGCAAGGAGACGGCTTCCGGATGAGCAAGACCTGCTGCCTCGACGCTCTCCTGACGCTGTACAACCTGTCGCTGCAATCGTCAAACATCCCGACCCTCATCTCCTCCGGCATCATGCAGAGCCTCCACGACGTCCTGACGCCGTCCTCCCCGACGACGGAGAAGGCCCTGGCCGTGCTGATCAACTTGGCGCTGACCCGCGCCGGCAAGAAGGAGATCATGGCCGACTCGGACATGGTGGGCGCCATCGTCGTCATCCTCGAGAACGGGGACCCCGCCGAGAAGGAGAAGGCCGTGTCGTGCCTGTGGATCATCTGCAGCGGCGATGACGGCGGCAGCCAGATGGTGCTCCAGGAAGGCGTGATCCCGGCGCTGGTGTCCCTGACGGCCAACGGCACGGGCAAGACGAAGGATAAGGCGCAGAGGCTGCTCCTGCTGTTCCGCGGGAAGCGGCAGCGGGAGGTCGAGCAGCTGCAGCCAAGGGTGCAGCTGCACGAGGTGGTGAGCCAGGCAACCGCGCAGCACGAGCAGCAGCAGCAGCAGCAACAAGAAGAAAGCAGCGAGCCAGGCAGCGACAAGATGTCGCGGCTGCGCAATTCAAAGTCGAAGTTGAGAAGGTTCACGAGGGCCCTGGCTAGGTTGCTCAAGAAATGGGGCATCCGCTGATCTGATCTACTACAGAGGAAAGAACCACGTCGGCTAGTGTGAACTTTGGCAAATGCAATATCAATGTTATCTTCCCGTGTGGGTTGACTCACTCGTTTTCGTCTCCTTCGCATTGCCGCGATATCCATACTCGTCTCACTTATGCGGGCATTGACCGTCTCTCTGTACCTATTAACCTTGTGCTAAGGCAAAATTAGTAAAAAGGGTTTAAGCTTATTGTGTTTTGCCAAAATGTAAGCCAAGATGTGTTAACAAGGATTAAGTGCGATCATCAAAGTGTGTAACAAGGATTAATTCAGGTCATAAATCTAATTATATAATACGTAACCCAAATTAA
CDS Sequence
- >LOC_Os04g41250.1
ATGGAGAAAGTCGAGGTCGATGGGAACTTCATTGGTACGGGTAATTGGAAGCTGCATGGAGCACTATGTAAGCAACTTCACAAAGTAGTTCTTGAAGTATTGGATGTTATTCCTGTCCTTGAAGCTACAAGGCCTGGAAACAGTTCTGGACTTCTTGCATTGAGTTCCTTGCGCATAGCTGTTGAGAAGGCCAAGAATCTACTTCAGTATTGCTCAGAGTGCAGCAAGCTATACTTGGCCTTTACAGCAGAAAATGTCCTGGCAAAATTTGAGAAAGCAAGATATGCGCTTCTGGAAAGTCTTCACCAATTGGAAGAAACACTTCCAGAAGCAGCCAGTTCTCAGATACTAGATATCGCAAAAGATCTGGAGAAAGCAGTTTTTACCTTGGATCTGATTGAAAAGCAAGCTGGTGTGGATGTGAATCAATTAGTTCAGAATGAGGCAAAATCCAATGGCTTTCTTCATGACAATGAACTTGAATTTTTCCGACAAACTGCATTTCGGGTCGGCGTTGCGTCATCGGCAACAGCTCTTACCGAGAGAAGAGCACTTAGAAGGCTTCTTGAGAGGGCTCATGCAGAGGAAGACATAAAGAAAGAATCAGTTGCATCTTATCTACTGCACCTAATGAGGAAATACTCAAGCATTTTTAGGAGCGAAACGACGGATTTCACCAACACATCCATGTGCTCAAGCCCTTCTTGCTCTTCCCGTTCATTGTCCAGCTCGATTGATCTCCATGGAAATGGTCATGTTATTGAAAAGTCGATATCTAGGGTTGGCTCCTTCAATCTCAGGCAGATCAAAGGCTTATCAGGTAGCATGCCATTGCCACCTGAGGAACTAAGGTGCCCGATCTCCTTGCAACTCATGCATGACCCTGTTATTATCGCATCTGGTCAGACATATGAGCGGGCTTGCATTGAGAAATGGTTTAGCAGCGGCAACACAACCTGCCCAAAGACTCGGAATGAATTATCCCAGCTCTCCATGACGCCCAACTATTGCATCAAGGGTTTGATAGCTTCATGGTGCGAGCAGAACGGGGTTCTAGTTCCATCGGCGCCGCCTGATTCTCCCAAGCTCAAGTACCTGAGGATATCATCCTTGAATAGTAGCAAATGTCTTGTGACCAATGGCGTTAGCACGGTCTTGTTTGAAGACACATGCGCGGAGGATGATATTAAGGATGGTGGTAAAGTTGCTTCGGAGGAGTGCACTCGGCAGAACTCCGGAGAGGCTCCATCTGAGATATGTGAAGTTGATCAGGCCTCACCAGAAAAACATCCTCATGAGAACTCCGAGAAGGTAGCAGAGGCGACATGTGAGCTTTGGCTGCGTGTGCTGAGCAAGGACGACGATGAGTGTGTCGACGAGCAACGTGAGGTGATCGAGCAGATTAGATTCCTTTTGAAGGATGACAACGAGCTTAGGAAATACGCGGGTGCTAATGGTATTACCGAGCTACTCATCCACTTTGTGAAGAAGGCAGTCTGCAGAGATGATGTTCAGTGCCAGGTGGTTGGAACAATGGCTCTGTTCAACCTTGCTGTCAGCAATGATAGGAACAAGAAACAACTTCTCTCAGGTGGAGTCCTCCCCTTGATGGAGCAGATGATACAGAAGCCTGAAACCTACGAGGCTGCCGTCGCAATGTACCTGAACATTTCCTGCCTCGCCGAGGCGCAGGCGATCATCGGGCAGAGCGAGGCCGCGCCTCTCCTGATCAAGGGCCTGCAAGGAGACGGCTTCCGGATGAGCAAGACCTGCTGCCTCGACGCTCTCCTGACGCTGTACAACCTGTCGCTGCAATCGTCAAACATCCCGACCCTCATCTCCTCCGGCATCATGCAGAGCCTCCACGACGTCCTGACGCCGTCCTCCCCGACGACGGAGAAGGCCCTGGCCGTGCTGATCAACTTGGCGCTGACCCGCGCCGGCAAGAAGGAGATCATGGCCGACTCGGACATGGTGGGCGCCATCGTCGTCATCCTCGAGAACGGGGACCCCGCCGAGAAGGAGAAGGCCGTGTCGTGCCTGTGGATCATCTGCAGCGGCGATGACGGCGGCAGCCAGATGGTGCTCCAGGAAGGCGTGATCCCGGCGCTGGTGTCCCTGACGGCCAACGGCACGGGCAAGACGAAGGATAAGGCGCAGAGGCTGCTCCTGCTGTTCCGCGGGAAGCGGCAGCGGGAGGTCGAGCAGCTGCAGCCAAGGGTGCAGCTGCACGAGGTGGTGAGCCAGGCAACCGCGCAGCACGAGCAGCAGCAGCAGCAGCAACAAGAAGAAAGCAGCGAGCCAGGCAGCGACAAGATGTCGCGGCTGCGCAATTCAAAGTCGAAGTTGAGAAGGTTCACGAGGGCCCTGGCTAGGTTGCTCAAGAAATGGGGCATCCGCTGA
Protein Sequence
- >LOC_Os04g41250.1
MEKVEVDGNFIGTGNWKLHGALCKQLHKVVLEVLDVIPVLEATRPGNSSGLLALSSLRIAVEKAKNLLQYCSECSKLYLAFTAENVLAKFEKARYALLESLHQLEETLPEAASSQILDIAKDLEKAVFTLDLIEKQAGVDVNQLVQNEAKSNGFLHDNELEFFRQTAFRVGVASSATALTERRALRRLLERAHAEEDIKKESVASYLLHLMRKYSSIFRSETTDFTNTSMCSSPSCSSRSLSSSIDLHGNGHVIEKSISRVGSFNLRQIKGLSGSMPLPPEELRCPISLQLMHDPVIIASGQTYERACIEKWFSSGNTTCPKTRNELSQLSMTPNYCIKGLIASWCEQNGVLVPSAPPDSPKLKYLRISSLNSSKCLVTNGVSTVLFEDTCAEDDIKDGGKVASEECTRQNSGEAPSEICEVDQASPEKHPHENSEKVAEATCELWLRVLSKDDDECVDEQREVIEQIRFLLKDDNELRKYAGANGITELLIHFVKKAVCRDDVQCQVVGTMALFNLAVSNDRNKKQLLSGGVLPLMEQMIQKPETYEAAVAMYLNISCLAEAQAIIGQSEAAPLLIKGLQGDGFRMSKTCCLDALLTLYNLSLQSSNIPTLISSGIMQSLHDVLTPSSPTTEKALAVLINLALTRAGKKEIMADSDMVGAIVVILENGDPAEKEKAVSCLWIICSGDDGGSQMVLQEGVIPALVSLTANGTGKTKDKAQRLLLLFRGKRQREVEQLQPRVQLHEVVSQATAQHEQQQQQQQEESSEPGSDKMSRLRNSKSKLRRFTRALARLLKKWGIR*