Gene Details:
- MSU gene ID: LOC_Os04g32050
- RAPdb gene ID: Os04g0390500
- Gene Symbol: OsYSL6
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Knockout of OsYSL6 resulted in decreased growth of both roots and shoots only in the high-manganese (Mn) condition.
- OsYSL6 is involved in the detoxification of excess manganese in rice.
- Taken together, our results suggest that OsYSL6 is a Mn-nicotianamine transporter that is required for the detoxification of excess Mn in rice.
- OsYSL6 was constitutively expressed in both the shoots and roots, and the expression level was not affected by either deficiency or toxicity of various metals.
- Analysis with OsYSL6 promoter-green fluorescent protein transgenic rice revealed that OsYSL6 was expressed in all cells of both the roots and shoots.
Function-related keywords:
- manganese , transporter , shoot , growth , root
Literature:
- OsYSL6 is involved in the detoxification of excess manganese in rice . DOI: 10.1104/pp.111.186031 ; PMID: 21969384
- Comparative transcriptome profile analysis of rice varieties with different tolerance to zinc deficiency . DOI: 10.1111/plb.13227 ; PMID: 33296551
Related News:
Gene Resources:
- NCBI ID: AK064828
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os04g32050.1
GCTGTATTAATAAAACCTCACCCCCTCGCCGCCTCGTCGTCGTCTACCTCCCACCACACGCGAAGAACCAAGAGATTTTTCTTTTTTTTTTCCTCTTATATTTAATTTAATTCGAGGAGGAGAAGAAGCAGAGGAGGAGGAGTAGGTTGGGAGAGGAGGAGAGGCATTGCCGATGGGCTCGGTGGCGGACGATGCGGAGATCACCGGCCCGCTCCTCGCCGCCGCCGCCGGCGGCGGCGGTGACAGCGCCGCGGCGGCGGGGGTGGAGAGGGTGCCGGCGTGGAGGGAGCAGGTGACGGTGCGGGGGATCGTGGTGAGCGCGGTGCTGGGCGTGCTGTTCTGCCTCATCACGCACAAGCTGAACCTCACGGTGGGGGTGATCCCGTCGCTCAACGTCTCTGCGGGGCTGCTCGGGTACTTCCTGGTGCGGTCGTGGACGGCGGTGCTCGGGAGGCTAGGGTTCGTCATCGCGCCCTTCACCAAGCAGGAGAACACCGTCATCCAGACCTGCGTCGTCGCCTGCTACGGCCTCGCCTTCAGCGGGGGTTTTGGGTCATATATGCTTGCAATGGATCAGAAAACATACGAACTTATTGGGCCAGATTATCCTGGTAACAGGGCGATCGATGTTATGAATCCTTCATTGGGTTGGATGATCGGGTTCATGTTTGTTGTTAGCTTCCTTGGACTATTTAGTCTTGTTGCACTGCGCAAGGTAATGGTGATTGATTACAAGTTGACCTATCCCAGTGGAACTGCGACAGCTATGTTGATAAATAGCTTCCACACTACCAGTGGAGCAGAGCTTGCAGAAAAGCAAGTTAGCTGTCTCGGAAAGTATTTGAGCATTAGTTTTTTCTGGAACTGCTTCAAGTGGTTCTTCAGCGGCGTTGGGGATTCTTGTGGTTTTGACAATTTCCCATCTCTGGGACTTGCAGCATTTAAGAACACGTTTTATTTTGATTTCAGTCCAACCTATATTGGATGTGGTCTTATATGCCCACATATTGTTAACTGCTCTACACTTCTTGGAGCAATCATATCTTGGGGTTTCCTCTGGCCATATATATCTACAAAAGCTGGGGACTGGTATCCAGCTAACCTAGGAAGCAATGATTTCAAAGGGCTATACGGATACAAGGTTTTTATATCTGTATCTGTGATACTTGGTGATGGTCTTTATAACCTCATCAAGATCATCTATGCTACTATCAAGGAAGTAATGAATGCACGGTCGAAGCAAGGAAGACTTCCCCTTGTGCGGGTTCATGATGATGATGAAGGCTCTAAATTATCAGCTGAAGAAAAGCTTCGGAATGACACGTTTCTAAAAGACAGAATTCCATCATGGTTAGCAGGATCAGGTTATGTTGGCCTTGCAGCAATCTCAACAGCAACTGTGCCAATGATCTTCCCGCAGGTCAAGTGGTACCTTGTCCTGTGTGCCTATGTTGTAGCTCCCCTGCTCGCCTTCTGCAACTCATACGGCTGTGGCCTCACAGACTGGAACCTTGCGTCCACGTATGGAAAGATTGGCCTTTTTATTTTTGCCTCCTTGGTTGGCCGAAGCGGTGGCGTGATTGCTGGCCTAGCAGCTTGCGGTGTTATGATGTCCATCGTATCCACCGCTGCCGATCTCATGCAGGACTTCAGGACTGGTTACCTGACCCTCTCTTCACCAAGGTCCATGTTTGTGTCACAGTTGATTGGGACCACCCTTGGCTGCATCATCGCCCCTCTGACCTTTTGGCTCTACTGGACTGCTTTCGATATCGGCAATCCTGATGGCATGTTCAAGGCTCCATATGCCGTCATCTACCGTGAGATGTCAATCCTGGGTGTCGAAGGATTCTCAGCGCTGCCCCAACATTGCCTGGCGATCTGCTCGGTCTTCTTTGTCGCAGCTATTTTGATCAACCTCCTGCGGGACGTCACTCCGAAGAGCGTCTCCAAGTTCATCCCGCTCCCGATGGCTATGGCTGTCCCATTCTACATTGGGGCGTACTTTGCGATCGACATGTTCGTTGGGACGGTTATCCTGTTTGTCTGGGAGAGGGTGAACCGCAAGGAATCTGAGGACTTTGCAGGCGCGATTGCATCTGGTTTGATCTGCGGTGATGGGATCTGGAGTGTTCCATCTGCGATATTGTCCATCATGAGGATTGACCCACCAATGTGCATGTACTTCAAGCCATCCCTTACCAGCTGAAAATAGCGCAAAATCCGTTGTTTATTTGGATGCCAAAATAGAAAAGAATTTTCACATGTATATATTTCTCTCTGTTGTAAATTAGACTGCGCAAAAGTGCAGTAACTTTGTTCTTTCTGTTAATATATTTCTCTGTTTATGATATGTTCATTACTGAACCAAATACCAGAATATCCATACTGATTTGTTGATTCGTTAATTTGCTTATT - >LOC_Os04g32050.2
GCTGTATTAATAAAACCTCACCCCCTCGCCGCCTCGTCGTCGTCTACCTCCCACCACACGCGAAGAACCAAGAGATTTTTCTTTTTTTTTTCCTCTTATATTTAATTTAATTCGAGGAGGAGAAGAAGCAGAGGAGGAGGAGTAGGTTGGGAGAGGAGGAGAGGCATTGCCGATGGGCTCGGTGGCGGACGATGCGGAGATCACCGGCCCGCTCCTCGCCGCCGCCGCCGGCGGCGGCGGTGACAGCGCCGCGGCGGCGGGGGTGGAGAGGGTGCCGGCGTGGAGGGAGCAGGTGACGGTGCGGGGGATCGTGGTGAGCGCGGTGCTGGGCGTGCTGTTCTGCCTCATCACGCACAAGCTGAACCTCACGGTGGGGGTGATCCCGTCGCTCAACGTCTCTGCGGGGCTGCTCGGGTACTTCCTGGTGCGGTCGTGGACGGCGGTGCTCGGGAGGCTAGGGTTCGTCATCGCGCCCTTCACCAAGCAGGAGAACACCGTCATCCAGACCTGCGTCGTCGCCTGCTACGGCCTCGCCTTCAGCGGGGGTTTTGGGTCATATATGCTTGCAATGGATCAGAAAACATACGAACTTATTGGGCCAGATTATCCTGGTAACAGGGCGATCGATGTTATGAATCCTTCATTGGGTTGGATGATCGGGTTCATGTTTGTTGTTAGCTTCCTTGGACTATTTAGTCTTGTTGCACTGCGCAAGGTAATGGTGATTGATTACAAGTTGACCTATCCCAGTGGAACTGCGACAGCTATGTTGATAAATAGCTTCCACACTACCAGTGGAGCAGAGCTTGCAGAAAAGCAAGTTAGCTGTCTCGGAAAGTATTTGAGCATTAGTTTTTTCTGGAACTGCTTCAAGTGGTTCTTCAGCGGCGTTGGGGATTCTTGTGGTTTTGACAATTTCCCATCTCTGGGACTTGCAGCATTTAAGAACACGTTTTATTTTGATTTCAGTCCAACCTATATTGGATGTGGTCTTATATGCCCACATATTGTTAACTGCTCTACACTTCTTGGAGCAATCATATCTTGGGGTTTCCTCTGGCCATATATATCTACAAAAGCTGGGGACTGGTATCCAGCTAACCTAGGAAGCAATGATTTCAAAGGGCTATACGGATACAAGGTTTTTATATCTGTATCTGTGATACTTGGTGATGGTCTTTATAACCTCATCAAGATCATCTATGCTACTATCAAGGAAGTAATGAATGCACGGTCGAAGCAAGGAAGACTTCCCCTTGTGCGGGTTCATGATGATGATGAAGGCTCTAAATTATCAGCTGAAGAAAAGCTTCGGAATGACACGTTTCTAAAAGACAGAATTCCATCATGGTTAGCAGGATCAGGTTATGTTGGCCTTGCAGCAATCTCAACAGCAACTGTGCCAATGATCTTCCCGCAGGTCAAGTGGTACCTTGTCCTGTGTGCCTATGTTGTAGCTCCCCTGCTCGCCTTCTGCAACTCATACGGCTGTGGCCTCACAGACTGGAACCTTGCGTCCACGTATGGAAAGATTGGCCTTTTTATTTTTGCCTCCTTGGTTGGCCGAAGCGGTGGCGTGATTGCTGGCCTAGCAGCTTGCGGTGTTATGATGTCCATCGTATCCACCGCTGCCGATCTCATGCAGGACTTCAGGACTGGTTACCTGACCCTCTCTTCACCAAGGTCCATGTTTGTGTCACAGTTGATTGGGACCACCCTTGGCTGCATCATCGCCCCTCTGACCTTTTGGCTCTACTGGACTGCTTTCGATATCGGCAATCCTGATGGCATGTTCAAGGCTCCATATGCCGTCATCTACCGTGAGATGTCAATCCTGGGTGTCGAAGGATTCTCAGCGCTGCCCCAACATTGCCTGGCGATCTGCTCGGTCTTCTTTGTCGCAGCTATTTTGATCAACCTCCTGCGGGACGTCACTCCGAAGAGCGTCTCCAAGTTCATCCCGCTCCCGATGGCTATGGCTGTCCCATTCTACATTGGGGCGTACTTTGCGATCGACATGTTCGTTGGGACGGTTATCCTGTTTGTCTGGGAGAGGGTGAACCGCAAGGAATCTGAGGACTTTGCAGGCGCGATTGCATCTGGTTTGATCTGCGGTGATGGGATCTGGAGTGTTCCATCTGCGATATTGTCCATCATGAGGATTGACCCACCAATGTGCATGTACTTCAAGCCATCCCTTACCAGCTGAAAATAGCGCAAAATCCGTTGTTTATTTGGATGCCAAAATAGAAAAGAATTTTCACATGTATATATTTCTCTCTGTTGTAAATTAGACTGCGCAAAAGTGCAGTAACTTTGTTCTTTCTGTTAATATATTTCTCTGTTTATGATATGTTCATTACTGAACCAAATACCAGAATATCCATACTGATTTGTTGATTCGTTAATTTGCTTATT
CDS Sequence
- >LOC_Os04g32050.1
ATGGGCTCGGTGGCGGACGATGCGGAGATCACCGGCCCGCTCCTCGCCGCCGCCGCCGGCGGCGGCGGTGACAGCGCCGCGGCGGCGGGGGTGGAGAGGGTGCCGGCGTGGAGGGAGCAGGTGACGGTGCGGGGGATCGTGGTGAGCGCGGTGCTGGGCGTGCTGTTCTGCCTCATCACGCACAAGCTGAACCTCACGGTGGGGGTGATCCCGTCGCTCAACGTCTCTGCGGGGCTGCTCGGGTACTTCCTGGTGCGGTCGTGGACGGCGGTGCTCGGGAGGCTAGGGTTCGTCATCGCGCCCTTCACCAAGCAGGAGAACACCGTCATCCAGACCTGCGTCGTCGCCTGCTACGGCCTCGCCTTCAGCGGGGGTTTTGGGTCATATATGCTTGCAATGGATCAGAAAACATACGAACTTATTGGGCCAGATTATCCTGGTAACAGGGCGATCGATGTTATGAATCCTTCATTGGGTTGGATGATCGGGTTCATGTTTGTTGTTAGCTTCCTTGGACTATTTAGTCTTGTTGCACTGCGCAAGGTAATGGTGATTGATTACAAGTTGACCTATCCCAGTGGAACTGCGACAGCTATGTTGATAAATAGCTTCCACACTACCAGTGGAGCAGAGCTTGCAGAAAAGCAAGTTAGCTGTCTCGGAAAGTATTTGAGCATTAGTTTTTTCTGGAACTGCTTCAAGTGGTTCTTCAGCGGCGTTGGGGATTCTTGTGGTTTTGACAATTTCCCATCTCTGGGACTTGCAGCATTTAAGAACACGTTTTATTTTGATTTCAGTCCAACCTATATTGGATGTGGTCTTATATGCCCACATATTGTTAACTGCTCTACACTTCTTGGAGCAATCATATCTTGGGGTTTCCTCTGGCCATATATATCTACAAAAGCTGGGGACTGGTATCCAGCTAACCTAGGAAGCAATGATTTCAAAGGGCTATACGGATACAAGGTTTTTATATCTGTATCTGTGATACTTGGTGATGGTCTTTATAACCTCATCAAGATCATCTATGCTACTATCAAGGAAGTAATGAATGCACGGTCGAAGCAAGGAAGACTTCCCCTTGTGCGGGTTCATGATGATGATGAAGGCTCTAAATTATCAGCTGAAGAAAAGCTTCGGAATGACACGTTTCTAAAAGACAGAATTCCATCATGGTTAGCAGGATCAGGTTATGTTGGCCTTGCAGCAATCTCAACAGCAACTGTGCCAATGATCTTCCCGCAGGTCAAGTGGTACCTTGTCCTGTGTGCCTATGTTGTAGCTCCCCTGCTCGCCTTCTGCAACTCATACGGCTGTGGCCTCACAGACTGGAACCTTGCGTCCACGTATGGAAAGATTGGCCTTTTTATTTTTGCCTCCTTGGTTGGCCGAAGCGGTGGCGTGATTGCTGGCCTAGCAGCTTGCGGTGTTATGATGTCCATCGTATCCACCGCTGCCGATCTCATGCAGGACTTCAGGACTGGTTACCTGACCCTCTCTTCACCAAGGTCCATGTTTGTGTCACAGTTGATTGGGACCACCCTTGGCTGCATCATCGCCCCTCTGACCTTTTGGCTCTACTGGACTGCTTTCGATATCGGCAATCCTGATGGCATGTTCAAGGCTCCATATGCCGTCATCTACCGTGAGATGTCAATCCTGGGTGTCGAAGGATTCTCAGCGCTGCCCCAACATTGCCTGGCGATCTGCTCGGTCTTCTTTGTCGCAGCTATTTTGATCAACCTCCTGCGGGACGTCACTCCGAAGAGCGTCTCCAAGTTCATCCCGCTCCCGATGGCTATGGCTGTCCCATTCTACATTGGGGCGTACTTTGCGATCGACATGTTCGTTGGGACGGTTATCCTGTTTGTCTGGGAGAGGGTGAACCGCAAGGAATCTGAGGACTTTGCAGGCGCGATTGCATCTGGTTTGATCTGCGGTGATGGGATCTGGAGTGTTCCATCTGCGATATTGTCCATCATGAGGATTGACCCACCAATGTGCATGTACTTCAAGCCATCCCTTACCAGCTGA - >LOC_Os04g32050.2
ATGGGCTCGGTGGCGGACGATGCGGAGATCACCGGCCCGCTCCTCGCCGCCGCCGCCGGCGGCGGCGGTGACAGCGCCGCGGCGGCGGGGGTGGAGAGGGTGCCGGCGTGGAGGGAGCAGGTGACGGTGCGGGGGATCGTGGTGAGCGCGGTGCTGGGCGTGCTGTTCTGCCTCATCACGCACAAGCTGAACCTCACGGTGGGGGTGATCCCGTCGCTCAACGTCTCTGCGGGGCTGCTCGGGTACTTCCTGGTGCGGTCGTGGACGGCGGTGCTCGGGAGGCTAGGGTTCGTCATCGCGCCCTTCACCAAGCAGGAGAACACCGTCATCCAGACCTGCGTCGTCGCCTGCTACGGCCTCGCCTTCAGCGGGGGTTTTGGGTCATATATGCTTGCAATGGATCAGAAAACATACGAACTTATTGGGCCAGATTATCCTGGTAACAGGGCGATCGATGTTATGAATCCTTCATTGGGTTGGATGATCGGGTTCATGTTTGTTGTTAGCTTCCTTGGACTATTTAGTCTTGTTGCACTGCGCAAGGTAATGGTGATTGATTACAAGTTGACCTATCCCAGTGGAACTGCGACAGCTATGTTGATAAATAGCTTCCACACTACCAGTGGAGCAGAGCTTGCAGAAAAGCAAGTTAGCTGTCTCGGAAAGTATTTGAGCATTAGTTTTTTCTGGAACTGCTTCAAGTGGTTCTTCAGCGGCGTTGGGGATTCTTGTGGTTTTGACAATTTCCCATCTCTGGGACTTGCAGCATTTAAGAACACGTTTTATTTTGATTTCAGTCCAACCTATATTGGATGTGGTCTTATATGCCCACATATTGTTAACTGCTCTACACTTCTTGGAGCAATCATATCTTGGGGTTTCCTCTGGCCATATATATCTACAAAAGCTGGGGACTGGTATCCAGCTAACCTAGGAAGCAATGATTTCAAAGGGCTATACGGATACAAGGTTTTTATATCTGTATCTGTGATACTTGGTGATGGTCTTTATAACCTCATCAAGATCATCTATGCTACTATCAAGGAAGTAATGAATGCACGGTCGAAGCAAGGAAGACTTCCCCTTGTGCGGGTTCATGATGATGATGAAGGCTCTAAATTATCAGCTGAAGAAAAGCTTCGGAATGACACGTTTCTAAAAGACAGAATTCCATCATGGTTAGCAGGATCAGGTTATGTTGGCCTTGCAGCAATCTCAACAGCAACTGTGCCAATGATCTTCCCGCAGGTCAAGTGGTACCTTGTCCTGTGTGCCTATGTTGTAGCTCCCCTGCTCGCCTTCTGCAACTCATACGGCTGTGGCCTCACAGACTGGAACCTTGCGTCCACGTATGGAAAGATTGGCCTTTTTATTTTTGCCTCCTTGGTTGGCCGAAGCGGTGGCGTGATTGCTGGCCTAGCAGCTTGCGGTGTTATGATGTCCATCGTATCCACCGCTGCCGATCTCATGCAGGACTTCAGGACTGGTTACCTGACCCTCTCTTCACCAAGGTCCATGTTTGTGTCACAGTTGATTGGGACCACCCTTGGCTGCATCATCGCCCCTCTGACCTTTTGGCTCTACTGGACTGCTTTCGATATCGGCAATCCTGATGGCATGTTCAAGGCTCCATATGCCGTCATCTACCGTGAGATGTCAATCCTGGGTGTCGAAGGATTCTCAGCGCTGCCCCAACATTGCCTGGCGATCTGCTCGGTCTTCTTTGTCGCAGCTATTTTGATCAACCTCCTGCGGGACGTCACTCCGAAGAGCGTCTCCAAGTTCATCCCGCTCCCGATGGCTATGGCTGTCCCATTCTACATTGGGGCGTACTTTGCGATCGACATGTTCGTTGGGACGGTTATCCTGTTTGTCTGGGAGAGGGTGAACCGCAAGGAATCTGAGGACTTTGCAGGCGCGATTGCATCTGGTTTGATCTGCGGTGATGGGATCTGGAGTGTTCCATCTGCGATATTGTCCATCATGAGGATTGACCCACCAATGTGCATGTACTTCAAGCCATCCCTTACCAGCTGA
Protein Sequence
- >LOC_Os04g32050.1
MGSVADDAEITGPLLAAAAGGGGDSAAAAGVERVPAWREQVTVRGIVVSAVLGVLFCLITHKLNLTVGVIPSLNVSAGLLGYFLVRSWTAVLGRLGFVIAPFTKQENTVIQTCVVACYGLAFSGGFGSYMLAMDQKTYELIGPDYPGNRAIDVMNPSLGWMIGFMFVVSFLGLFSLVALRKVMVIDYKLTYPSGTATAMLINSFHTTSGAELAEKQVSCLGKYLSISFFWNCFKWFFSGVGDSCGFDNFPSLGLAAFKNTFYFDFSPTYIGCGLICPHIVNCSTLLGAIISWGFLWPYISTKAGDWYPANLGSNDFKGLYGYKVFISVSVILGDGLYNLIKIIYATIKEVMNARSKQGRLPLVRVHDDDEGSKLSAEEKLRNDTFLKDRIPSWLAGSGYVGLAAISTATVPMIFPQVKWYLVLCAYVVAPLLAFCNSYGCGLTDWNLASTYGKIGLFIFASLVGRSGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSSPRSMFVSQLIGTTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSILGVEGFSALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVILFVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYFKPSLTS* - >LOC_Os04g32050.2
MGSVADDAEITGPLLAAAAGGGGDSAAAAGVERVPAWREQVTVRGIVVSAVLGVLFCLITHKLNLTVGVIPSLNVSAGLLGYFLVRSWTAVLGRLGFVIAPFTKQENTVIQTCVVACYGLAFSGGFGSYMLAMDQKTYELIGPDYPGNRAIDVMNPSLGWMIGFMFVVSFLGLFSLVALRKVMVIDYKLTYPSGTATAMLINSFHTTSGAELAEKQVSCLGKYLSISFFWNCFKWFFSGVGDSCGFDNFPSLGLAAFKNTFYFDFSPTYIGCGLICPHIVNCSTLLGAIISWGFLWPYISTKAGDWYPANLGSNDFKGLYGYKVFISVSVILGDGLYNLIKIIYATIKEVMNARSKQGRLPLVRVHDDDEGSKLSAEEKLRNDTFLKDRIPSWLAGSGYVGLAAISTATVPMIFPQVKWYLVLCAYVVAPLLAFCNSYGCGLTDWNLASTYGKIGLFIFASLVGRSGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSSPRSMFVSQLIGTTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSILGVEGFSALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVILFVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMYFKPSLTS*