Information report for SOR1
Gene Details
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Functional Descriptions
- Segregation analyses by using an F2 population derived from a cross between the soil-surface rooting mutant and wild-type Nipponbare indicated that the trait was controlled by a single recessive gene, designated as SOR1.
- CONCLUSION: These results suggest that SOR1, a rice mutant causing soil-surface rooting and altered root gravitropic response, is allelic to Os04g0101800, and that a 33-bp deletion in the coding region of this gene causes the mutant phenotypes.
- E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.
Functional Keywords
Literature and News
Gene Resources
- UniProt: A0A0P0W5W4
- EMBL: AP014960
- AlphaFoldDB: A0A0P0W5W4
- EnsemblPlants: Os04t0101800-01
- Gramene: Os04t0101800-01
- KEGG: osa:4334888
- Orthologous matrix: CIAAHAH
- InterPro: IPR001841, IPR002035, IPR013083
- PANTHER: PTHR10579, PTHR10579:SF55
- SUPFAM: SSF53300, SSF57850
- PROSITE: PS50089, PS50234
- Gene3D: 3.30.40.10, 3.40.50.410
- OrthoDB: A0A0P0W5W4
- SWISS-MODEL: A0A0P0W5W4
- eggNOG: ENOG502QRQC
Sequences
cDNA Sequence
- >LOC_Os04g01160.1
GGGGGAGGGGAGAGAGCAGCTTGCCGTCATGCCATGTGATACATGATAGGAGTAGAAGGAGAAGAGGAGAGAGAGTGTGTGTGAATCAGTGAATTAAGGTGGTATAAGTAGCAAGCGCCACCGGGGAGAGTTCCTTGCTTGGTTTGGTTCCTCTCTGCTTCTCTCTCTTTTCCTCCCTCCGGCGACCACCAGCATACCATACCATCGCCGGCTTGCTTGCTTCCTTCCTTCCTTCCTTGGGGGAGAGAGAGAGTGTGTGTGTGATGGGGACGGGGTGGCGGAGGGCACTGTGCACGTCGGTCCGGCGAGATCCGGAGCAACAAGAGGTGAAGAGGCGAGGAGAGGCCCCAAGCCCCCGGTGTGGAGGAGGCAGCAGGCTGGGTGGCTTCTTCTCCGCCATCTCCAGCAGCCATAGCAGCAGTAATCCAGCAACAACGACGCCCACCCTGCGATGCCGCACCAAACCAAAGCCACAGTCCAGCAGCAGCGACCACCAGCAGCAGCTTCCGTCGTCCGCGCCGGCGCCCAAGAAGAGGATGCCTCTGCTGCAGGCTCTCTCCGTGCCATCCTCGCCCAGATCCCCCTCCAGATTCGCCCTCCTCAAGGCCTCCATCCTGCCCAACAAGAGCCGGTGCGGCGTGTGCTCCCACGGCGTGAAGACCGGCGCGGCGGCGGTGTTCACGGCGGAGTGCTCCCACTCCTTCCACTTCCCCTGCATCGCCGCCCACGCCCACGCCCTCGCCGCCGCCACCGCTCTCTCCTGCCCCGTCTGCGCCGCGCCATGGCGCCAGGCCCCCTTCATCAACAAGCGCACCACCACCACCGACGACCACAAGCGCAAGTCCTACGACGACGACGAGCCCCTCCTCGCGCCCAAGGCCGCCGCCGGCGCCTTCAACCCTATCCCCGAGGACGACGAGGACGACGCCACCGAGTTCAGGGGCTTCTTCCCGGCGCGCCCCAGGAGCGGGCTGGCCGTCACCCTCGCCCCGGACGCCGCCCTCGTGTCCGCTGGGCGGAGGCACGGCAAGTACGTGGTGGCCGTGAGGGTGAAGGCGCCCGCCCTGCGCTCCTCGCCCTCCACGCGCGCCCCCATCGACCTCGTCACCGTCCTCGACGTCAGCCAGGGCATGATGGGCGACAAGCTTCACATGCTCAAGAGAGGCATGCGCCTCGTCATCGCCTCTCTCGGCCCCGCCGACCGCCTCGCCATCGTCGCCTTCTCCGGCGCCGCCAAGCGCCTCCTCCCGCTGCGCCGGATGACGCGCCAGGGCCAGCGCTCCGCCCGCCAGATCGTCGATCGCCTTGTCGTCTGCGCCGCCGCCCAGGGCCAGGAACAGCCGCAGGCCGTCTGCGTTGGCGACGCGCTGCGCAAGGCCACCAAGGTGCTCGAGGACCGCCGCGACCGCAACCCCGTCGCCACCGTCATGCTCCTCTCCGACACGCAGCAGCAGCAGCAGCAGCAGCAGGATGCGATCCGGCGCCCGCCAGCCGCCCCTCCGGCCACGCGATTCACGCACGTCGAGATCCCCATCGGGCCAGGGGAGGAGCCGGCCCGGTCGGCGCTGGTGGCGGAGGAGGACGACGACCAGTTCTCGGAGCACGCCTTCGCGAAATGCCTGGGCGGCCTCGTCAGCGTGGTGATGCAGGAGGTGCAGCTGGAGCTGGCGTTCCCGACGGGCGAGATCACGGCGGTGTACTCGTGCGGCCACGGGCAGCAGGCGGTGGCCCTTGGGGGCGGTGGCGGCGGCGCGGCGGTGAGTGTCTCCCTGGGCGAGATGTACGCGGAGGAAGAGCGGGAGCTGCTGGTGGAGCTGCGCGCGCCGCTGAGCCAGAGCCACCCACACTCGCTGTCCGTGCGGTGCAGCTACCGTGAGCCGGCGTCGCAGGAGACGGTGCGCGGCGCGGAGCAGCAGCTGGTGGTGCCGGCCCTCCACGGCGGGAGCTCGTCGCGGCGGCTGCACGACCTGTTCGTGGCGACACGGGCGGTGGCCGAGTCGCGGCGGCTGGCGGAGCTGAACGACTACGCGACGGCCATCCACCTGCTGTCGTCGGCGCGGGCGGTGGTGGTGCAGTCGGCGGAGCAGGGGCTGGTTGGCAGCCTGGACACGGAGCTGAGCGACATGCGGTGGCGGCGCGGGCAGTCGGCAGGCAGGCGGCGTGGCGGCGAGTCGGAGGAGACTCCGGTGGGGACGCCGCGGGCGCGGGGGGGAGAGCCGCTGACGCCGACGTCGGCGTGGCGCGCGGCGGAGCAGCTGGCCAAGGTGGCCATCATGCGCAAGTCCATGAACCGTGTCAGCGATCTCCACGGTTTCGAGAACGCCAGATTCTGATTCTCATCATCTATCAATCTCAGCTCAGCTTGTAATCAATGATAATTTTCTTTTCTTTTTCATTTTCATTTTCATTTTCTTCTTATGTGAAATGAATCAACAAACACAAGATATGTCTCCACGACGAAGAAGAAAGAAGAAAGGCAGAATTAAGAAGAGGGAGGAGTCCCTGCCGGAGCGCGGCGGACGTAAATTACATCTACTCCCTCCATTACTGTTTTCTTTTTCTCTTCTCTTTTTGTACTCCTATTCAAAAATTTGAACTAGTTTAGACAGTCTCATCCTCTCTAACTGTCACTTTGCCA
CDS Sequence
- >LOC_Os04g01160.1
ATGGGGACGGGGTGGCGGAGGGCACTGTGCACGTCGGTCCGGCGAGATCCGGAGCAACAAGAGGTGAAGAGGCGAGGAGAGGCCCCAAGCCCCCGGTGTGGAGGAGGCAGCAGGCTGGGTGGCTTCTTCTCCGCCATCTCCAGCAGCCATAGCAGCAGTAATCCAGCAACAACGACGCCCACCCTGCGATGCCGCACCAAACCAAAGCCACAGTCCAGCAGCAGCGACCACCAGCAGCAGCTTCCGTCGTCCGCGCCGGCGCCCAAGAAGAGGATGCCTCTGCTGCAGGCTCTCTCCGTGCCATCCTCGCCCAGATCCCCCTCCAGATTCGCCCTCCTCAAGGCCTCCATCCTGCCCAACAAGAGCCGGTGCGGCGTGTGCTCCCACGGCGTGAAGACCGGCGCGGCGGCGGTGTTCACGGCGGAGTGCTCCCACTCCTTCCACTTCCCCTGCATCGCCGCCCACGCCCACGCCCTCGCCGCCGCCACCGCTCTCTCCTGCCCCGTCTGCGCCGCGCCATGGCGCCAGGCCCCCTTCATCAACAAGCGCACCACCACCACCGACGACCACAAGCGCAAGTCCTACGACGACGACGAGCCCCTCCTCGCGCCCAAGGCCGCCGCCGGCGCCTTCAACCCTATCCCCGAGGACGACGAGGACGACGCCACCGAGTTCAGGGGCTTCTTCCCGGCGCGCCCCAGGAGCGGGCTGGCCGTCACCCTCGCCCCGGACGCCGCCCTCGTGTCCGCTGGGCGGAGGCACGGCAAGTACGTGGTGGCCGTGAGGGTGAAGGCGCCCGCCCTGCGCTCCTCGCCCTCCACGCGCGCCCCCATCGACCTCGTCACCGTCCTCGACGTCAGCCAGGGCATGATGGGCGACAAGCTTCACATGCTCAAGAGAGGCATGCGCCTCGTCATCGCCTCTCTCGGCCCCGCCGACCGCCTCGCCATCGTCGCCTTCTCCGGCGCCGCCAAGCGCCTCCTCCCGCTGCGCCGGATGACGCGCCAGGGCCAGCGCTCCGCCCGCCAGATCGTCGATCGCCTTGTCGTCTGCGCCGCCGCCCAGGGCCAGGAACAGCCGCAGGCCGTCTGCGTTGGCGACGCGCTGCGCAAGGCCACCAAGGTGCTCGAGGACCGCCGCGACCGCAACCCCGTCGCCACCGTCATGCTCCTCTCCGACACGCAGCAGCAGCAGCAGCAGCAGCAGGATGCGATCCGGCGCCCGCCAGCCGCCCCTCCGGCCACGCGATTCACGCACGTCGAGATCCCCATCGGGCCAGGGGAGGAGCCGGCCCGGTCGGCGCTGGTGGCGGAGGAGGACGACGACCAGTTCTCGGAGCACGCCTTCGCGAAATGCCTGGGCGGCCTCGTCAGCGTGGTGATGCAGGAGGTGCAGCTGGAGCTGGCGTTCCCGACGGGCGAGATCACGGCGGTGTACTCGTGCGGCCACGGGCAGCAGGCGGTGGCCCTTGGGGGCGGTGGCGGCGGCGCGGCGGTGAGTGTCTCCCTGGGCGAGATGTACGCGGAGGAAGAGCGGGAGCTGCTGGTGGAGCTGCGCGCGCCGCTGAGCCAGAGCCACCCACACTCGCTGTCCGTGCGGTGCAGCTACCGTGAGCCGGCGTCGCAGGAGACGGTGCGCGGCGCGGAGCAGCAGCTGGTGGTGCCGGCCCTCCACGGCGGGAGCTCGTCGCGGCGGCTGCACGACCTGTTCGTGGCGACACGGGCGGTGGCCGAGTCGCGGCGGCTGGCGGAGCTGAACGACTACGCGACGGCCATCCACCTGCTGTCGTCGGCGCGGGCGGTGGTGGTGCAGTCGGCGGAGCAGGGGCTGGTTGGCAGCCTGGACACGGAGCTGAGCGACATGCGGTGGCGGCGCGGGCAGTCGGCAGGCAGGCGGCGTGGCGGCGAGTCGGAGGAGACTCCGGTGGGGACGCCGCGGGCGCGGGGGGGAGAGCCGCTGACGCCGACGTCGGCGTGGCGCGCGGCGGAGCAGCTGGCCAAGGTGGCCATCATGCGCAAGTCCATGAACCGTGTCAGCGATCTCCACGGTTTCGAGAACGCCAGATTCTGA
Protein Sequence
- >LOC_Os04g01160.1
MGTGWRRALCTSVRRDPEQQEVKRRGEAPSPRCGGGSRLGGFFSAISSSHSSSNPATTTPTLRCRTKPKPQSSSSDHQQQLPSSAPAPKKRMPLLQALSVPSSPRSPSRFALLKASILPNKSRCGVCSHGVKTGAAAVFTAECSHSFHFPCIAAHAHALAAATALSCPVCAAPWRQAPFINKRTTTTDDHKRKSYDDDEPLLAPKAAAGAFNPIPEDDEDDATEFRGFFPARPRSGLAVTLAPDAALVSAGRRHGKYVVAVRVKAPALRSSPSTRAPIDLVTVLDVSQGMMGDKLHMLKRGMRLVIASLGPADRLAIVAFSGAAKRLLPLRRMTRQGQRSARQIVDRLVVCAAAQGQEQPQAVCVGDALRKATKVLEDRRDRNPVATVMLLSDTQQQQQQQQDAIRRPPAAPPATRFTHVEIPIGPGEEPARSALVAEEDDDQFSEHAFAKCLGGLVSVVMQEVQLELAFPTGEITAVYSCGHGQQAVALGGGGGGAAVSVSLGEMYAEEERELLVELRAPLSQSHPHSLSVRCSYREPASQETVRGAEQQLVVPALHGGSSSRRLHDLFVATRAVAESRRLAELNDYATAIHLLSSARAVVVQSAEQGLVGSLDTELSDMRWRRGQSAGRRRGGESEETPVGTPRARGGEPLTPTSAWRAAEQLAKVAIMRKSMNRVSDLHGFENARF*