Gene Details:

Functional Descriptions:

  • Segregation analyses by using an F2 population derived from a cross between the soil-surface rooting mutant and wild-type Nipponbare indicated that the trait was controlled by a single recessive gene, designated as SOR1.
  • CONCLUSION: These results suggest that SOR1, a rice mutant causing soil-surface rooting and altered root gravitropic response, is allelic to Os04g0101800, and that a 33-bp deletion in the coding region of this gene causes the mutant phenotypes.
  • E3 ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os04g01160.1
    GGGGGAGGGGAGAGAGCAGCTTGCCGTCATGCCATGTGATACATGATAGGAGTAGAAGGAGAAGAGGAGAGAGAGTGTGTGTGAATCAGTGAATTAAGGTGGTATAAGTAGCAAGCGCCACCGGGGAGAGTTCCTTGCTTGGTTTGGTTCCTCTCTGCTTCTCTCTCTTTTCCTCCCTCCGGCGACCACCAGCATACCATACCATCGCCGGCTTGCTTGCTTCCTTCCTTCCTTCCTTGGGGGAGAGAGAGAGTGTGTGTGTGATGGGGACGGGGTGGCGGAGGGCACTGTGCACGTCGGTCCGGCGAGATCCGGAGCAACAAGAGGTGAAGAGGCGAGGAGAGGCCCCAAGCCCCCGGTGTGGAGGAGGCAGCAGGCTGGGTGGCTTCTTCTCCGCCATCTCCAGCAGCCATAGCAGCAGTAATCCAGCAACAACGACGCCCACCCTGCGATGCCGCACCAAACCAAAGCCACAGTCCAGCAGCAGCGACCACCAGCAGCAGCTTCCGTCGTCCGCGCCGGCGCCCAAGAAGAGGATGCCTCTGCTGCAGGCTCTCTCCGTGCCATCCTCGCCCAGATCCCCCTCCAGATTCGCCCTCCTCAAGGCCTCCATCCTGCCCAACAAGAGCCGGTGCGGCGTGTGCTCCCACGGCGTGAAGACCGGCGCGGCGGCGGTGTTCACGGCGGAGTGCTCCCACTCCTTCCACTTCCCCTGCATCGCCGCCCACGCCCACGCCCTCGCCGCCGCCACCGCTCTCTCCTGCCCCGTCTGCGCCGCGCCATGGCGCCAGGCCCCCTTCATCAACAAGCGCACCACCACCACCGACGACCACAAGCGCAAGTCCTACGACGACGACGAGCCCCTCCTCGCGCCCAAGGCCGCCGCCGGCGCCTTCAACCCTATCCCCGAGGACGACGAGGACGACGCCACCGAGTTCAGGGGCTTCTTCCCGGCGCGCCCCAGGAGCGGGCTGGCCGTCACCCTCGCCCCGGACGCCGCCCTCGTGTCCGCTGGGCGGAGGCACGGCAAGTACGTGGTGGCCGTGAGGGTGAAGGCGCCCGCCCTGCGCTCCTCGCCCTCCACGCGCGCCCCCATCGACCTCGTCACCGTCCTCGACGTCAGCCAGGGCATGATGGGCGACAAGCTTCACATGCTCAAGAGAGGCATGCGCCTCGTCATCGCCTCTCTCGGCCCCGCCGACCGCCTCGCCATCGTCGCCTTCTCCGGCGCCGCCAAGCGCCTCCTCCCGCTGCGCCGGATGACGCGCCAGGGCCAGCGCTCCGCCCGCCAGATCGTCGATCGCCTTGTCGTCTGCGCCGCCGCCCAGGGCCAGGAACAGCCGCAGGCCGTCTGCGTTGGCGACGCGCTGCGCAAGGCCACCAAGGTGCTCGAGGACCGCCGCGACCGCAACCCCGTCGCCACCGTCATGCTCCTCTCCGACACGCAGCAGCAGCAGCAGCAGCAGCAGGATGCGATCCGGCGCCCGCCAGCCGCCCCTCCGGCCACGCGATTCACGCACGTCGAGATCCCCATCGGGCCAGGGGAGGAGCCGGCCCGGTCGGCGCTGGTGGCGGAGGAGGACGACGACCAGTTCTCGGAGCACGCCTTCGCGAAATGCCTGGGCGGCCTCGTCAGCGTGGTGATGCAGGAGGTGCAGCTGGAGCTGGCGTTCCCGACGGGCGAGATCACGGCGGTGTACTCGTGCGGCCACGGGCAGCAGGCGGTGGCCCTTGGGGGCGGTGGCGGCGGCGCGGCGGTGAGTGTCTCCCTGGGCGAGATGTACGCGGAGGAAGAGCGGGAGCTGCTGGTGGAGCTGCGCGCGCCGCTGAGCCAGAGCCACCCACACTCGCTGTCCGTGCGGTGCAGCTACCGTGAGCCGGCGTCGCAGGAGACGGTGCGCGGCGCGGAGCAGCAGCTGGTGGTGCCGGCCCTCCACGGCGGGAGCTCGTCGCGGCGGCTGCACGACCTGTTCGTGGCGACACGGGCGGTGGCCGAGTCGCGGCGGCTGGCGGAGCTGAACGACTACGCGACGGCCATCCACCTGCTGTCGTCGGCGCGGGCGGTGGTGGTGCAGTCGGCGGAGCAGGGGCTGGTTGGCAGCCTGGACACGGAGCTGAGCGACATGCGGTGGCGGCGCGGGCAGTCGGCAGGCAGGCGGCGTGGCGGCGAGTCGGAGGAGACTCCGGTGGGGACGCCGCGGGCGCGGGGGGGAGAGCCGCTGACGCCGACGTCGGCGTGGCGCGCGGCGGAGCAGCTGGCCAAGGTGGCCATCATGCGCAAGTCCATGAACCGTGTCAGCGATCTCCACGGTTTCGAGAACGCCAGATTCTGATTCTCATCATCTATCAATCTCAGCTCAGCTTGTAATCAATGATAATTTTCTTTTCTTTTTCATTTTCATTTTCATTTTCTTCTTATGTGAAATGAATCAACAAACACAAGATATGTCTCCACGACGAAGAAGAAAGAAGAAAGGCAGAATTAAGAAGAGGGAGGAGTCCCTGCCGGAGCGCGGCGGACGTAAATTACATCTACTCCCTCCATTACTGTTTTCTTTTTCTCTTCTCTTTTTGTACTCCTATTCAAAAATTTGAACTAGTTTAGACAGTCTCATCCTCTCTAACTGTCACTTTGCCA
CDS Sequence
  • >LOC_Os04g01160.1
    ATGGGGACGGGGTGGCGGAGGGCACTGTGCACGTCGGTCCGGCGAGATCCGGAGCAACAAGAGGTGAAGAGGCGAGGAGAGGCCCCAAGCCCCCGGTGTGGAGGAGGCAGCAGGCTGGGTGGCTTCTTCTCCGCCATCTCCAGCAGCCATAGCAGCAGTAATCCAGCAACAACGACGCCCACCCTGCGATGCCGCACCAAACCAAAGCCACAGTCCAGCAGCAGCGACCACCAGCAGCAGCTTCCGTCGTCCGCGCCGGCGCCCAAGAAGAGGATGCCTCTGCTGCAGGCTCTCTCCGTGCCATCCTCGCCCAGATCCCCCTCCAGATTCGCCCTCCTCAAGGCCTCCATCCTGCCCAACAAGAGCCGGTGCGGCGTGTGCTCCCACGGCGTGAAGACCGGCGCGGCGGCGGTGTTCACGGCGGAGTGCTCCCACTCCTTCCACTTCCCCTGCATCGCCGCCCACGCCCACGCCCTCGCCGCCGCCACCGCTCTCTCCTGCCCCGTCTGCGCCGCGCCATGGCGCCAGGCCCCCTTCATCAACAAGCGCACCACCACCACCGACGACCACAAGCGCAAGTCCTACGACGACGACGAGCCCCTCCTCGCGCCCAAGGCCGCCGCCGGCGCCTTCAACCCTATCCCCGAGGACGACGAGGACGACGCCACCGAGTTCAGGGGCTTCTTCCCGGCGCGCCCCAGGAGCGGGCTGGCCGTCACCCTCGCCCCGGACGCCGCCCTCGTGTCCGCTGGGCGGAGGCACGGCAAGTACGTGGTGGCCGTGAGGGTGAAGGCGCCCGCCCTGCGCTCCTCGCCCTCCACGCGCGCCCCCATCGACCTCGTCACCGTCCTCGACGTCAGCCAGGGCATGATGGGCGACAAGCTTCACATGCTCAAGAGAGGCATGCGCCTCGTCATCGCCTCTCTCGGCCCCGCCGACCGCCTCGCCATCGTCGCCTTCTCCGGCGCCGCCAAGCGCCTCCTCCCGCTGCGCCGGATGACGCGCCAGGGCCAGCGCTCCGCCCGCCAGATCGTCGATCGCCTTGTCGTCTGCGCCGCCGCCCAGGGCCAGGAACAGCCGCAGGCCGTCTGCGTTGGCGACGCGCTGCGCAAGGCCACCAAGGTGCTCGAGGACCGCCGCGACCGCAACCCCGTCGCCACCGTCATGCTCCTCTCCGACACGCAGCAGCAGCAGCAGCAGCAGCAGGATGCGATCCGGCGCCCGCCAGCCGCCCCTCCGGCCACGCGATTCACGCACGTCGAGATCCCCATCGGGCCAGGGGAGGAGCCGGCCCGGTCGGCGCTGGTGGCGGAGGAGGACGACGACCAGTTCTCGGAGCACGCCTTCGCGAAATGCCTGGGCGGCCTCGTCAGCGTGGTGATGCAGGAGGTGCAGCTGGAGCTGGCGTTCCCGACGGGCGAGATCACGGCGGTGTACTCGTGCGGCCACGGGCAGCAGGCGGTGGCCCTTGGGGGCGGTGGCGGCGGCGCGGCGGTGAGTGTCTCCCTGGGCGAGATGTACGCGGAGGAAGAGCGGGAGCTGCTGGTGGAGCTGCGCGCGCCGCTGAGCCAGAGCCACCCACACTCGCTGTCCGTGCGGTGCAGCTACCGTGAGCCGGCGTCGCAGGAGACGGTGCGCGGCGCGGAGCAGCAGCTGGTGGTGCCGGCCCTCCACGGCGGGAGCTCGTCGCGGCGGCTGCACGACCTGTTCGTGGCGACACGGGCGGTGGCCGAGTCGCGGCGGCTGGCGGAGCTGAACGACTACGCGACGGCCATCCACCTGCTGTCGTCGGCGCGGGCGGTGGTGGTGCAGTCGGCGGAGCAGGGGCTGGTTGGCAGCCTGGACACGGAGCTGAGCGACATGCGGTGGCGGCGCGGGCAGTCGGCAGGCAGGCGGCGTGGCGGCGAGTCGGAGGAGACTCCGGTGGGGACGCCGCGGGCGCGGGGGGGAGAGCCGCTGACGCCGACGTCGGCGTGGCGCGCGGCGGAGCAGCTGGCCAAGGTGGCCATCATGCGCAAGTCCATGAACCGTGTCAGCGATCTCCACGGTTTCGAGAACGCCAGATTCTGA
Protein Sequence
  • >LOC_Os04g01160.1
    MGTGWRRALCTSVRRDPEQQEVKRRGEAPSPRCGGGSRLGGFFSAISSSHSSSNPATTTPTLRCRTKPKPQSSSSDHQQQLPSSAPAPKKRMPLLQALSVPSSPRSPSRFALLKASILPNKSRCGVCSHGVKTGAAAVFTAECSHSFHFPCIAAHAHALAAATALSCPVCAAPWRQAPFINKRTTTTDDHKRKSYDDDEPLLAPKAAAGAFNPIPEDDEDDATEFRGFFPARPRSGLAVTLAPDAALVSAGRRHGKYVVAVRVKAPALRSSPSTRAPIDLVTVLDVSQGMMGDKLHMLKRGMRLVIASLGPADRLAIVAFSGAAKRLLPLRRMTRQGQRSARQIVDRLVVCAAAQGQEQPQAVCVGDALRKATKVLEDRRDRNPVATVMLLSDTQQQQQQQQDAIRRPPAAPPATRFTHVEIPIGPGEEPARSALVAEEDDDQFSEHAFAKCLGGLVSVVMQEVQLELAFPTGEITAVYSCGHGQQAVALGGGGGGAAVSVSLGEMYAEEERELLVELRAPLSQSHPHSLSVRCSYREPASQETVRGAEQQLVVPALHGGSSSRRLHDLFVATRAVAESRRLAELNDYATAIHLLSSARAVVVQSAEQGLVGSLDTELSDMRWRRGQSAGRRRGGESEETPVGTPRARGGEPLTPTSAWRAAEQLAKVAIMRKSMNRVSDLHGFENARF*