Information report for qTGW3;TGW3
Gene Details
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Functional Descriptions
- A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.
- The loss-of-function form of OsSK41 at qTGW3 represents a rare allele that has not been extensively utilized in rice breeding.
- Short-term (14)CO2 feeding experiments suggested that OsGSK5 promoted higher flux to starch accumulation in the roots under this condition and that this mechanism may help to underscore the better growth characteristics observed.
- Here, we expand upon this hypothesis and consider (i) how OsGSK5 action could fit into a signaling model that integrates salinity stress to changes in starch metabolism, and (ii) how this would facilitate whole plant physiological adaptions in source-to-sink partitioning.
- Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.
- In addition, physiological and molecular studies suggest that TGW3 mediates the brassinosteroid response, the effect of which can be relayed through the regulatory axis.
Functional Keywords
- grain , grain-size , breeding , Kinase , growth , starch , salinity , stress , salinity-stress , brassinosteroid , Brassinosteroid , auxin
Literature and News
- A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice . DOI: 10.1016/j.molp.2018.03.005 ; PMID: 29567449
- How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: A proposed model . DOI: 10.1080/15592324.2017.1403708 ; PMID: 29131712
- Identification of a novel QTL and candidate gene associated with grain size using chromosome segment substitution lines in rice . DOI: 10.1038/s41598-020-80667-6 ; PMID: 33420305
- The kinase OsSK41/OsGSK5 negatively regulates amylose content in rice endosperm by affecting the interaction between OsEBP89 and OsBP5 . DOI: 10.1111/jipb.13488 ; PMID: 36965127
- Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling . DOI: 10.1016/j.celrep.2023.112187 ; PMID: 36871218
Gene Resources
- UniProt: Q0DLX0
- EMBL: AC096856, AP008209, CM000140
- EnsemblPlants: Os03t0841800-01
- Gramene: Os03t0841800-01
- KEGG: dosa:Os03g0841800, osa:4334738
- Orthologous matrix: MKTTMPM
- InterPro: IPR000719, IPR008271, IPR011009
- PANTHER: PTHR24057, PTHR24057:SF40
- SUPFAM: SSF56112
- PROSITE: PS00107, PS00108, PS50011
- Gene3D: 1.10.510.10, 3.30.200.20
- OrthoDB: Q0DLX0
- SWISS-MODEL: Q0DLX0
- Conserved Domain Database: cd14137
Sequences
cDNA Sequence
- >LOC_Os03g62500.1
CTCCCCCCTCATCTCCCCCATCCTTCCATTCCATCCATGGCATCACCTCCATAAATTTCTCTCTGCTCCTCCATGCCCTTGCCTATTCTTTTTTACCAGAAAAGGAAAAGTTTGGAAGGAGAAGAGCAGCTGCCCTCCACTACCTCACTCCACTCTCCCCCCCTACCTAACCTACTTGCTCCACACCAGAGAGAGCCCCAAACCATCTCATCTCATCCTCTTCCGATTCCCTGCTCGCCCATAATTATTCCAAGAGCACTGGAGCCTGTTGATCTGCTTGCTCCAAGAATTTTTCTTTCATCTCTGTGGGATTTTGGCTCCAGCTGTTGCTGAAGTGATGCTGGAGGAAACGGCATTGCAATGGCGGGCTGATCTTCTGCAAGCAATGGAGTGAATACTGGTCTGTTTTTCTTGTCCTGACCTGGGGAATCTCGGGTAGTGGGGGATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGGCCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATATCAGGCCAAATGTCGAGAAACAGGAGAAATTGTTGCCATTAAAAAGGTTCTTCAAGATAAACGTTACAAGAACAGGGAATTGCAAATTATGCATATGCTGGATCATCCTAATATTGTTGGTCTTAAGCATTACTTCTTCTCAACCACTGAAAGGGATGAACTTTACCTCAATCTTGTCCTTGAGTATGTTCCAGAGACAGTAAACCGAATTGCGAGACAGTACAGCAGAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAGATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTGTTAACCCACATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAGCCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGCCTCTGTTCCCTGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAGTTCTCTAGCTCTTCTTTTTTCGCAGTTTTTCTTCCTGAGGGAAGCTCTGTAAAGGTGTAGTGGCTTCTATGTGCCCATCTCAGTGTGGATAAGGTCTTTGGCTAGAGTTGTTGTTGTTGTTGTTCATGGCAGGATGTGATGTGAGTGAGGTTGGAGAAGAAGAGGCTTGTGCTTTGGTGTGCTTGTGCAGTTGGTTTGAGGTTGGAATCTATGCTTCAGGGTTCCAGGCTGTGTAACTCCTCCAGTTCTCTTTGGACTTTGGTTTGAAGATTGTGTGCAGTAACAGTGCTTGGTTCAACTTCAGTTCAGAGTGGTCTGGTGATGATAAAGAAAATCATTCAGAAAGTTTTGTTTATGTTCAGTGCTTCACCATTCAATACTGTCGATGCAGGTGCAGATATGTTCAACTTCAGAGTTTTGTTTATGTTACATGCTTCACCATTCAGAAAGTGTGCACAAAGGATCTCAGTTTTCTTATAAATCTTCAGAAGATTCTCAATAGAATGATCTCTCAA
CDS Sequence
- >LOC_Os03g62500.1
ATGGCCTATTCTGGACTAAGGCATGGCGGCGTTGGGAGCTCCTCTCGGCCGGGACATGGATTCAAGGGCCCGGCTAGTTCGGTTGAATGTCTAGGAAGGGAGATGCTGGAAATGCAATTGAGGGATTCCAAACCAGATGTTGGTGATGAAAAGAACACTGAACGAGATGTAGTCGACGGCTCTAGCGCTGAAGCTGGTCACATAATAGCTACTACGATCCGTGGCCGAAATGGTCTACCTAAACAGTCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATATCAGGCCAAATGTCGAGAAACAGGAGAAATTGTTGCCATTAAAAAGGTTCTTCAAGATAAACGTTACAAGAACAGGGAATTGCAAATTATGCATATGCTGGATCATCCTAATATTGTTGGTCTTAAGCATTACTTCTTCTCAACCACTGAAAGGGATGAACTTTACCTCAATCTTGTCCTTGAGTATGTTCCAGAGACAGTAAACCGAATTGCGAGACAGTACAGCAGAATGAATCAACGGGTGCCCCTCATTTATGTCAAATTATACACTTATCAGATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTGTTAACCCACATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGGTCAAAGGAGAGCCAAATATCTCCTACATATGCTCAAGATATTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGCCTCTGTTCCCTGGGGAAAGTGGAGTTGATCAGCTGGTCGAGATTATCAAGGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCTATGGAAGCCTGCATGCACCCTTTCTTTGATGAGTTGAGAGATCCAAACACTCGTCTACCTAATGGGCGTCCTCTTCCTCCTCTCTTCAACTTCAGAACACAAGAGCTAAATGGCATCCCTCCAGAAGCCATCGAACGTCTGGTTCCCGAGCATGCGAGAAGGCAGAGTTTGTTCATGGCGCTGCGCACCTAG
Protein Sequence
- >LOC_Os03g62500.1
MAYSGLRHGGVGSSSRPGHGFKGPASSVECLGREMLEMQLRDSKPDVGDEKNTERDVVDGSSAEAGHIIATTIRGRNGLPKQSVTYIAEHVVGTGSFGVVYQAKCRETGEIVAIKKVLQDKRYKNRELQIMHMLDHPNIVGLKHYFFSTTERDELYLNLVLEYVPETVNRIARQYSRMNQRVPLIYVKLYTYQICRALAYIHNCVGICHRDIKPQNVLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDLWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFQKRLPPEAVDLVSRFLQYSPNLRCTAMEACMHPFFDELRDPNTRLPNGRPLPPLFNFRTQELNGIPPEAIERLVPEHARRQSLFMALRT*