Gene Details:
- MSU gene ID: LOC_Os03g61050
- RAPdb gene ID: Os03g0825700
- Gene Symbol: OsDEX1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Here we report a role of OsDEX1 (Defective in Exine Formation 1 in rice), a Ca2+ binding protein, in regulating rice tapetal cell degradation and pollen formation.
- In OsDEX1 anthers, tapetal cell degeneration is delayed and degradation of the callose wall surrounding the microspores is compromised, leading to aborted pollen formation and complete male sterility.
- Phylogenetic analysis revealed that OsDEX1 may have a conserved function in binding Ca2+ in flowering plants, and genetic complementation of pollen wall defects in an Arabidopsis dex1 mutant confirmed its evolutionary conservation during pollen development.
- Collectively, these findings suggest that OsDEX1 plays a conserved role in the development of tapetal cells and pollen formation, possibly via changing the Ca2+ homeostasis during pollen development.
- OsDEX1 transcript is observed in tapetal cells and microspores during the early anther development.
- Recombinant OsDEX1 is able to bind Ca2+ and regulate Ca2+ homeostasis in vitro, and OsDEX1 showed disturbed Ca2+ homeostasis in tapetal cells.
Function-related keywords:
- pollen , anther , sterility , development , homeostasis , tapetal , anther-development , pollen-development , pollen-wall , male-sterility
Literature:
- A Rice Ca2+ Binding Protein Is Required for Tapetum Function and Pollen Formation . DOI: 10.1104/pp.16.01261 ; PMID: 27663411
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g61050.1
GATCTGACCCGCAGTTTCACAGAAAACCCCTCGTCTCTTTCGCCATTTCGGATTCCCCACCCGACGAGTCTCCGACCACTTCCCACACCGGCGCCTCCACGCCGAGATCTCCTTCCCTCTCCACCGCCGGCGACCGCCGCGGCGCGGCGAGGCCCTCGGGGTCTAGGGTTTTGTACTCAGATGCGTCCCCTCCTCGCCTTCGCGGCGGTATGCGCCCTTCTCGTGGCTGCCGCAGCGCCGGCGGCCGCGGAGGAGGAGAAGGCGAACAAGTTCCGGCAGCGCGAGGCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGACCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATGCAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATATTGACAAGGACGGGACACGGGAAATAGTTTTGGCAACTTACAATGGTGTAGTGAATTTCTTCAGGGTATCAGGTTATATGATGATGGACAAGCTAGAAGTACCTCGTAGGAAGGTACACAAAGACTGGTATGTTGGGCTGAATACAGATCCCGTTGACCGCTCCCATCCAGATGTTCATGACAGCTCAATTGCAAAGAAAGCTGCTTCTGAAGAATCTCACCCAAATATTCAGGACAAGCCAGTTGTGAATGAATCTTCTAAGGAATCCCAGTCACGGAGCACAAATGACTCAACAACACGAGGAGTTGATTCCATGAAACATGCGTCTAAGGAAGAGCCAGTTGAAAGTAAACCTAATTCTACCCGAGGACAGGAGAATATGGATGTGTTAAACAATCTAAACAGCACAGATGCTGGGAACAACTCTAGTTTAAGTACTACAACAGAGAATGCATCACATGTTCAGAGAAGGTTGCTTCAAACAGATGAGAAAAGTAATCAAGCAGGAAGCTCAGAAACTGATGCAAGTGATACCGGAACAGCAAAAGCAGCTACTGTTGAAAATAGCGAGCCTCTAGAGGCTGATGCTGATGCATCATTTAATTTGTTTCGGGATGTAGAAGATCTGCCTGATGAGTACAATTACGATTATGATGACTACGTTGATGAAACCATGTGGGGAGACGAGGACTGGAAAGAACAACAACATGAAAAGGCAGAAGATTATGTGAGCATAGATGCTCACATCTTGTCCACCCCAGTGATTGCAGATATTGACAGAGATGGCATACAAGAAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAAGTCAAATGGACTGCAGAACTTGATTTGAGTACAGATAGTGGAAATTTTACTGCCCATGCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATATCAATGATGATGGGAAAATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCCCAACCGTGTCAGGAAACATATATGTTCTTAGTGGAAAGGATGGCTCAAAAATTCAGCCTTTCCCATATAGAACGCATGGAAGGATCATGAGTCCTGTTCTATTGCTTGACATGAGCAAACATGATGAAAAGTCTAAAGGCCTCACCCTTGCTACTACATCCTTTGATGGTTACTTGTATTTGATTGAGGGCTCAAGTGGCTGTGCAGATGTTGTTGACATTGGAGAGACCTCGTACAGTATGGTTTTGGCTGATAATGTTGATGGTGGAGATGACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTATAATGAACCAGGCAAGCAGCGGATGAAGCTTCCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCTGAAATGGCTCGTGCTTCTTCCAATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACATCTTGAGAATTTTAGCCCCAGATATGCTATCAATCTTTCTTGCACCATCATCCTGACTCCTGGAAGATGCTATGCTCTACTGCTATGTACTACTCCCTTCATTCCATTTTAAGTGCAGTTATGGGTTTCTTTGTTCAACGATTGACCGTCTATCTTTTTTGATTTTTTTATGATTAATACTTGTACTATTGTTAGATGATAAAATATGAATAGTACTTTATGC
CDS Sequence
- >LOC_Os03g61050.1
ATGCGTCCCCTCCTCGCCTTCGCGGCGGTATGCGCCCTTCTCGTGGCTGCCGCAGCGCCGGCGGCCGCGGAGGAGGAGAAGGCGAACAAGTTCCGGCAGCGCGAGGCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGACCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATGCAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATATTGACAAGGACGGGACACGGGAAATAGTTTTGGCAACTTACAATGGTGTAGTGAATTTCTTCAGGGTATCAGGTTATATGATGATGGACAAGCTAGAAGTACCTCGTAGGAAGGTACACAAAGACTGGTATGTTGGGCTGAATACAGATCCCGTTGACCGCTCCCATCCAGATGTTCATGACAGCTCAATTGCAAAGAAAGCTGCTTCTGAAGAATCTCACCCAAATATTCAGGACAAGCCAGTTGTGAATGAATCTTCTAAGGAATCCCAGTCACGGAGCACAAATGACTCAACAACACGAGGAGTTGATTCCATGAAACATGCGTCTAAGGAAGAGCCAGTTGAAAGTAAACCTAATTCTACCCGAGGACAGGAGAATATGGATGTGTTAAACAATCTAAACAGCACAGATGCTGGGAACAACTCTAGTTTAAGTACTACAACAGAGAATGCATCACATGTTCAGAGAAGGTTGCTTCAAACAGATGAGAAAAGTAATCAAGCAGGAAGCTCAGAAACTGATGCAAGTGATACCGGAACAGCAAAAGCAGCTACTGTTGAAAATAGCGAGCCTCTAGAGGCTGATGCTGATGCATCATTTAATTTGTTTCGGGATGTAGAAGATCTGCCTGATGAGTACAATTACGATTATGATGACTACGTTGATGAAACCATGTGGGGAGACGAGGACTGGAAAGAACAACAACATGAAAAGGCAGAAGATTATGTGAGCATAGATGCTCACATCTTGTCCACCCCAGTGATTGCAGATATTGACAGAGATGGCATACAAGAAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAAGTCAAATGGACTGCAGAACTTGATTTGAGTACAGATAGTGGAAATTTTACTGCCCATGCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATATCAATGATGATGGGAAAATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCCCAACCGTGTCAGGAAACATATATGTTCTTAGTGGAAAGGATGGCTCAAAAATTCAGCCTTTCCCATATAGAACGCATGGAAGGATCATGAGTCCTGTTCTATTGCTTGACATGAGCAAACATGATGAAAAGTCTAAAGGCCTCACCCTTGCTACTACATCCTTTGATGGTTACTTGTATTTGATTGAGGGCTCAAGTGGCTGTGCAGATGTTGTTGACATTGGAGAGACCTCGTACAGTATGGTTTTGGCTGATAATGTTGATGGTGGAGATGACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTATAATGAACCAGGCAAGCAGCGGATGAAGCTTCCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCTGAAATGGCTCGTGCTTCTTCCAATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAG
Protein Sequence
- >LOC_Os03g61050.1
MRPLLAFAAVCALLVAAAAPAAAEEEKANKFRQREATDDMLGYPHLDEDALLKTKCPKHVELRWQTEVSSSIYATPLIADINSDGKLEVVVPSFVHYLEVLEGSDGDKLPGWPAFHQSNVHSSPLLYDIDKDGTREIVLATYNGVVNFFRVSGYMMMDKLEVPRRKVHKDWYVGLNTDPVDRSHPDVHDSSIAKKAASEESHPNIQDKPVVNESSKESQSRSTNDSTTRGVDSMKHASKEEPVESKPNSTRGQENMDVLNNLNSTDAGNNSSLSTTTENASHVQRRLLQTDEKSNQAGSSETDASDTGTAKAATVENSEPLEADADASFNLFRDVEDLPDEYNYDYDDYVDETMWGDEDWKEQQHEKAEDYVSIDAHILSTPVIADIDRDGIQEMVISVSYFFDHEYYDKPEHLKELGGIDIGKYIASSIVVFNLDTRQVKWTAELDLSTDSGNFTAHAYSSPTVVDLDGDGNLDILVGTSFGLFYVIDHRGKVRNKFPLEMAEIHAPVIAADINDDGKIEMVTADVHGNVAAWTAEGEEIWEVHLKSLIPQRPTVGDVNGDGRTEVVVPTVSGNIYVLSGKDGSKIQPFPYRTHGRIMSPVLLLDMSKHDEKSKGLTLATTSFDGYLYLIEGSSGCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKEWRSSNQGRNNAAYRYNREGIYVKHGSRTFRDEEGKHFWVEFEIVDKYRVPYGNQAPYNVTVTLLVPGNYQGERRIVVNAAYNEPGKQRMKLPTVPVRTTGTVLVEMVDKNGFYFSDEFSLTFHMHYYKLLKWLVLLPMLGMFSVLVILRPQEGAPLPSFSRNID*