Gene Details:
- MSU gene ID: LOC_Os03g59040
- RAPdb gene ID: Os03g0805100
- Gene Symbol: SQS
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- It is demonstrated that RNAi-mediated disruption of a rice farnesyltransferase/squalene synthase (SQS) by maize squalene synthase improves drought tolerance at both the vegetative and reproductive stages.
Function-related keywords:
Literature:
- RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice . DOI: 10.1093/jxb/err258 ; PMID: 21926092
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g59040.2
GAGTTCGAGCGCGAGAGAGCACGATACGAAACGAACACGCGGAGAGAGAGAGAGAGAGAGAGAGGAGGAGGAGGAGACGACGCGGCGATCGGCGAGACCGGAATCCGGCGGCGACGCCACCCATCTCCCCCGCCGCCGTTGGCCGCGGCTAGAAGTAGTGGGGGGGGGGGGGGGGCTCGCCGGCGCGCGGGCATCGGCATCGGCGTGAGTAGATCGTATCGTGCGAGTGGTGGATCGGAGGAGGGTGATCGCGATTTGTGAGGAGGGGGGGGGGGGGGGGTTGGGATTTGGATTTGGATCGTGGGGATCAGGGGGAGGAGGAGATGGGGGTGCTGTCGAGGCCGGAGGAGGTGTTGCCGCTGGTGAAGCTGCGGGTGGCGGCGGGGCGGATCAAGCGGCAGATCCCGCCGGAGGAGCACTGGGCCTTCGCCTACACCATGCTGCAGAGGGTCTCCCGGAGCTTCGCGCTCGTCATCCAGCAGCTCGGCCCCGACCTCCGCAATGCCGTGTGCATCTTCTATCTCGTGCTCCGAGCCCTCGACACTGTTGAGGACGACACTAGCATTCCTGCCGCGGTGAAGGTGCCGATCCTTAAGGAATTCCATCGGCATATCTACAACCGCGACTGGCATTATTCATGTGGAACAAAAGACTACAAATTACTGATGGATAAGTTTCGCCTTGTCTCCACGGCTTTCTTGGAGCTTGGTCAAGGTTATCAAGAGGCAATTGAAGAAATCACTAGGCTAATGGGAGCAGGAATGGCAAAATTTATCTGCAAGGAGGTTGAAACTGTTGATGACTACAATGAGTACTGTCACTATGTAGCAGGGCTAGTGGGGTATGGGCTTTCCAGGCTCTTTCATGCTGGTGGGACGGAAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGAAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAGTCACGTATGTTCTGGCCTCGAGAAATATGGAGTAAATATGTCAATAAACTCGAGGATTTGAAATACGAGGAAAATTCAGAAAAGGCAGTTCAGTGTTTGAATGATATGGTGACTAACGCTCTGTCTCATGCTGAAGACTGCCTCCAATACATGTCAGCATTGAAGGATCATGCCATTTTCCGTTTTTGTGCAATACCTCAGATAATGGCAATTGGGACATGTGCTATTTGCTACAATAATGTGAATGTCTTTAGAGGAGTTGTTAAGATGAGGCGTGGGCTCACTGCACGAGTAATTGATGAGACAAACACAATGTCAGATGTCTATACTGCTTTCTATGAGTTCTCTTCGCTGATAGAATCGAAGATTGATAATAATGATCCAAATGCTTCCCTAACGCGGAAACGTGTTGATGCGATAAAGAGAACCTGCAAGTCATCTTGCTCACTAAAGAGAAGGGGATACGATTTGGAGAAGTCAAAGTACAACTCCATGCTGATAATGGTTGTACTTCTGTTGGTGGCTATTGTTTTGGGCATGATATATGCCAAGTGATTCGTCCTAGGTGGTCCATTGCCCTCAACTAGACAATCTATGCGCATCAGTGAATTTGATATCCAGATTTCTTATCAGCGCCAACTCCAAAGCACATGCAGCAATTATAAGTACTGACTGACTGCAAGAATAGACTGTACTTCTATGAAGTTGGATCTCTTCACCTATCTGTTCACCCTAAACCTTTTCATGGTTTATAAGAATGCGGGTTGTTTCTTGCAAAATTTTGGGTAGAATGGTGCAAAAAAGAATTTGTTCGATAATGAAGATAGCTGTGGTTTTGTTAGCTTGTGTTATATTGATGTAATTTAAGATCATGCGAGTGTTTATTTTCCCGGCGACATTCTTTTGTTTATTCATTATATGCAGTATCCATTTATCTTGGCTCTCACCTGCCTGATGAAAAAC - >LOC_Os03g59040.1
GAGTTCGAGCGCGAGAGAGCACGATACGAAACGAACACGCGGAGAGAGAGAGAGAGAGAGAGAGGAGGAGGAGGAGACGACGCGGCGATCGGCGAGACCGGAATCCGGCGGCGACGCCACCCATCTCCCCCGCCGCCGTTGGCCGCGGCTAGAAGTAGTGGGGGGGGGGGGGGGGCTCGCCGGCGCGCGGGCATCGGCATCGGCGTGAGTAGATCGTATCGTGCGAGTGGTGGATCGGAGGAGGGTGATCGCGATTTGTGAGGAGGGGGGGGGGGGGGGGTTGGGATTTGGATTTGGATCGTGGGGATCAGGGGGAGGAGGAGATGGGGGTGCTGTCGAGGCCGGAGGAGGTGTTGCCGCTGGTGAAGCTGCGGGTGGCGGCGGGGCGGATCAAGCGGCAGATCCCGCCGGAGGAGCACTGGGCCTTCGCCTACACCATGCTGCAGAGGGTCTCCCGGAGCTTCGCGCTCGTCATCCAGCAGCTCGGCCCCGACCTCCGCAATGCCGTGTGCATCTTCTATCTCGTGCTCCGAGCCCTCGACACTGTTGAGGACGACACTAGCATTCCTGCCGCGGTGAAGGTGCCGATCCTTAAGGAATTCCATCGGCATATCTACAACCGCGACTGGCATTATTCATGTGGAACAAAAGACTACAAATTACTGATGGATAAGTTTCGCCTTGTCTCCACGGCTTTCTTGGAGCTTGGTCAAGGTTATCAAGAGGCAATTGAAGAAATCACTAGGCTAATGGGAGCAGGAATGGCAAAATTTATCTGCAAGGAGGTTGAAACTGTTGATGACTACAATGAGTACTGTCACTATGTAGCAGGGCTAGTGGGGTATGGGCTTTCCAGGCTCTTTCATGCTGGTGGGACGGAAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGAAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAGTCACGTATGTTCTGGCCTCGAGAAATATGGAGTAAATATGTCAATAAACTCGAGGATTTGAAATACGAGGAAAATTCAGAAAAGGCAGTTCAGTGTTTGAATGATATGGTGACTAACGCTCTGTCTCATGCTGAAGACTGCCTCCAATACATGTCAGCATTGAAGGATCATGCCATTTTCCGTTTTTGTGCAATACCTCAGATAATGGCAATTGGGACATGTGCTATTTGCTACAATAATGTGAATGTCTTTAGAGGAGTTGTTAAGATGAGGCGTGGGCTCACTGCACGAGTAATTGATGAGACAAACACAATGTCAGATGTCTATACTGCTTTCTATGAGTTCTCTTCGCTGATAGAATCGAAGATTGATAATAATGATCCAAATGCTTCCCTAACGCGGAAACGTGTTGATGCGATAAAGAGAACCTGCAAGTCATCTTGCTCACTAAAGAGAAGGGGATACGATTTGGAGAAGTCAAAGTACAACTCCATGCTGATAATGGTTGTACTTCTGTTGGTGGCTATTGTTTTGGGCATGATATATGCCAAGTGATTCGTCCTAGGTGGTCCATTGCCCTCAACTAGACAATCTATGCGCATCAGTGAATTTGATATCCAGATTTCTTATCAGCGCCAACTCCAAAGCACATGCAGCAATTATAAGTACTGACTGACTGCAAGAATAGACTGTACTTCTATGAAGTTGGATCTCTTCACCTATCTGTTCACCCTAAACCTTTTCATGGTTTATAAGAATGCGGGTTGTTTCTTGCAAAATTTTGGGTAGAATGGTGCAAAAAAGAATTTGTTCGATAATGAAGATAGCTGTGGTTTTGTTAGCTTGTGTTATATTGATGTAATTTAAGATCATGCGAGTGTTTATTTTCCCGGCGACATTCTTTTGTTTATTCATTATATGCAGTATCCATTTATCTTGGCTCTCACCTGCCTGATGAAAAAC
CDS Sequence
- >LOC_Os03g59040.2
ATGGGGGTGCTGTCGAGGCCGGAGGAGGTGTTGCCGCTGGTGAAGCTGCGGGTGGCGGCGGGGCGGATCAAGCGGCAGATCCCGCCGGAGGAGCACTGGGCCTTCGCCTACACCATGCTGCAGAGGGTCTCCCGGAGCTTCGCGCTCGTCATCCAGCAGCTCGGCCCCGACCTCCGCAATGCCGTGTGCATCTTCTATCTCGTGCTCCGAGCCCTCGACACTGTTGAGGACGACACTAGCATTCCTGCCGCGGTGAAGGTGCCGATCCTTAAGGAATTCCATCGGCATATCTACAACCGCGACTGGCATTATTCATGTGGAACAAAAGACTACAAATTACTGATGGATAAGTTTCGCCTTGTCTCCACGGCTTTCTTGGAGCTTGGTCAAGGTTATCAAGAGGCAATTGAAGAAATCACTAGGCTAATGGGAGCAGGAATGGCAAAATTTATCTGCAAGGAGGTTGAAACTGTTGATGACTACAATGAGTACTGTCACTATGTAGCAGGGCTAGTGGGGTATGGGCTTTCCAGGCTCTTTCATGCTGGTGGGACGGAAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGAAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAGTCACGTATGTTCTGGCCTCGAGAAATATGGAGTAAATATGTCAATAAACTCGAGGATTTGAAATACGAGGAAAATTCAGAAAAGGCAGTTCAGTGTTTGAATGATATGGTGACTAACGCTCTGTCTCATGCTGAAGACTGCCTCCAATACATGTCAGCATTGAAGGATCATGCCATTTTCCGTTTTTGTGCAATACCTCAGATAATGGCAATTGGGACATGTGCTATTTGCTACAATAATGTGAATGTCTTTAGAGGAGTTGTTAAGATGAGGCGTGGGCTCACTGCACGAGTAATTGATGAGACAAACACAATGTCAGATGTCTATACTGCTTTCTATGAGTTCTCTTCGCTGATAGAATCGAAGATTGATAATAATGATCCAAATGCTTCCCTAACGCGGAAACGTGTTGATGCGATAAAGAGAACCTGCAAGTCATCTTGCTCACTAAAGAGAAGGGGATACGATTTGGAGAAGTCAAAGTACAACTCCATGCTGATAATGGTTGTACTTCTGTTGGTGGCTATTGTTTTGGGCATGATATATGCCAAGTGA - >LOC_Os03g59040.1
ATGGGGGTGCTGTCGAGGCCGGAGGAGGTGTTGCCGCTGGTGAAGCTGCGGGTGGCGGCGGGGCGGATCAAGCGGCAGATCCCGCCGGAGGAGCACTGGGCCTTCGCCTACACCATGCTGCAGAGGGTCTCCCGGAGCTTCGCGCTCGTCATCCAGCAGCTCGGCCCCGACCTCCGCAATGCCGTGTGCATCTTCTATCTCGTGCTCCGAGCCCTCGACACTGTTGAGGACGACACTAGCATTCCTGCCGCGGTGAAGGTGCCGATCCTTAAGGAATTCCATCGGCATATCTACAACCGCGACTGGCATTATTCATGTGGAACAAAAGACTACAAATTACTGATGGATAAGTTTCGCCTTGTCTCCACGGCTTTCTTGGAGCTTGGTCAAGGTTATCAAGAGGCAATTGAAGAAATCACTAGGCTAATGGGAGCAGGAATGGCAAAATTTATCTGCAAGGAGGTTGAAACTGTTGATGACTACAATGAGTACTGTCACTATGTAGCAGGGCTAGTGGGGTATGGGCTTTCCAGGCTCTTTCATGCTGGTGGGACGGAAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGAAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAGTCACGTATGTTCTGGCCTCGAGAAATATGGAGTAAATATGTCAATAAACTCGAGGATTTGAAATACGAGGAAAATTCAGAAAAGGCAGTTCAGTGTTTGAATGATATGGTGACTAACGCTCTGTCTCATGCTGAAGACTGCCTCCAATACATGTCAGCATTGAAGGATCATGCCATTTTCCGTTTTTGTGCAATACCTCAGATAATGGCAATTGGGACATGTGCTATTTGCTACAATAATGTGAATGTCTTTAGAGGAGTTGTTAAGATGAGGCGTGGGCTCACTGCACGAGTAATTGATGAGACAAACACAATGTCAGATGTCTATACTGCTTTCTATGAGTTCTCTTCGCTGATAGAATCGAAGATTGATAATAATGATCCAAATGCTTCCCTAACGCGGAAACGTGTTGATGCGATAAAGAGAACCTGCAAGTCATCTTGCTCACTAAAGAGAAGGGGATACGATTTGGAGAAGTCAAAGTACAACTCCATGCTGATAATGGTTGTACTTCTGTTGGTGGCTATTGTTTTGGGCATGATATATGCCAAGTGA
Protein Sequence
- >LOC_Os03g59040.2
MGVLSRPEEVLPLVKLRVAAGRIKRQIPPEEHWAFAYTMLQRVSRSFALVIQQLGPDLRNAVCIFYLVLRALDTVEDDTSIPAAVKVPILKEFHRHIYNRDWHYSCGTKDYKLLMDKFRLVSTAFLELGQGYQEAIEEITRLMGAGMAKFICKEVETVDDYNEYCHYVAGLVGYGLSRLFHAGGTEDLASDSLSNSMGLFLQKINIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSEKAVQCLNDMVTNALSHAEDCLQYMSALKDHAIFRFCAIPQIMAIGTCAICYNNVNVFRGVVKMRRGLTARVIDETNTMSDVYTAFYEFSSLIESKIDNNDPNASLTRKRVDAIKRTCKSSCSLKRRGYDLEKSKYNSMLIMVVLLLVAIVLGMIYAK* - >LOC_Os03g59040.1
MGVLSRPEEVLPLVKLRVAAGRIKRQIPPEEHWAFAYTMLQRVSRSFALVIQQLGPDLRNAVCIFYLVLRALDTVEDDTSIPAAVKVPILKEFHRHIYNRDWHYSCGTKDYKLLMDKFRLVSTAFLELGQGYQEAIEEITRLMGAGMAKFICKEVETVDDYNEYCHYVAGLVGYGLSRLFHAGGTEDLASDSLSNSMGLFLQKINIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSEKAVQCLNDMVTNALSHAEDCLQYMSALKDHAIFRFCAIPQIMAIGTCAICYNNVNVFRGVVKMRRGLTARVIDETNTMSDVYTAFYEFSSLIESKIDNNDPNASLTRKRVDAIKRTCKSSCSLKRRGYDLEKSKYNSMLIMVVLLLVAIVLGMIYAK*