Gene Details:
- MSU gene ID: LOC_Os03g50780
- RAPdb gene ID: Os03g0716200
- Gene Symbol: TIP3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Map-based cloning demonstrated that TIP3 encodes a conserved PHD-finger protein and further study confirmed TIP3 functioned as a transcription factor with transcriptional activation activity.
- The TIP3 mutant displayed smaller and pale yellow anthers without mature pollen grains, abnormal Ubisch body morphology, no pollen wall formation as well as delayed tapetum degeneration.
- Moreover, TIP3 can physically interact with TDR which is a key component of the transcriptional cascade in regulating tapetum development and pollen wall formation.
- Taken together, our results reveal an unprecedented role of TIP3 in regulating Ubisch bodies and pollen exine formation, which presents a potential tool to manipulate male fertility for hybrid rice breeding.
- TIP3 is preferentially expressed in the tapetum and microspores during anther development.
- Furthermore, disruption of TIP3 changed the expression of several genes involved in tapetum development and degradation, biosynthesis and transport of lipid monomers of sporopollenin in TIP3 mutant.
Function-related keywords:
- transcription-factor , pollen , anther , development , map-based-cloning , R-protein , breeding , fertility , tapetum , anther-development , pollen-wall , pollen-exine-formation
Literature:
- TDR INTERACTING PROTEIN 3, encoding a PHD-finger transcription factor, regulates Ubisch bodies and pollen wall formation in rice . DOI: 10.1111/tpj.14365 ; PMID: 31021015
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g50780.1
AAGGAGAGCCCAGGGCAATGCCGTCCATGCGCGCGCTCGAGCGGCTCGCCTCGTGGCCGACGCCCCCGCCGCCACCTCCGCCGCCGCCGCCGCCGGCGAAGGCGGCGGCGGCGGAGGCGGAGAGGCCGTGTCCGCCGTCGTCCGCCGCCACCACCTCGTCGTCGTCTTCTTCCTCGGCCTCGGCCGCGCCCGCGGCGGCGGGGGCGCCGCGCGTCTACCCGCTGCGGGACTTCCCGGGGAGGGAGGCGGCGGGGCTGGGCGGCGCGTTCCGGGACAACGTGCGGTGGCTGCTGAGGCAGTGGGGCGGCGCCTCCCCCGCCTCCCCCGCCGCCGGGGGTCCTGGGTCGGCGTCGGCGGCGGTGGCGGTGGCGTGGCGGGTGCTCCTCTCCGACGACCGCACCGGCGTCGTCGTCCCCATCTTCGCCGTCGAGGAGCCCGTCGCGTCCTCGCCCAAGCCGCTCTGCGATTACTGCCGCTGGGCGGGTTGGAGCCACCATTGGGTGTCAAAGCGGAAGTACCATTTCATTATTCCGGCGCCCGCTGACTGGGACCGCCAGCTTGCTGCTGATGTGATCCTTGGACGCACCGACCACCTCCTCCATGGCCTGATCCACAGCAATGGTTTTGGTCACCTTGTCATGCTCCGTGGTCGCGATGGCGGCTCCACTGCACTATCTGGCCGTGACATCATGGACATCTGGGATTGCCTCTGCTCCGCTCTTCGTGCCAGGGCTGTGTCTGTGGTGGACTTTTCCCAGAAACGCTCTCTGGATCTTCGTCTCCTGCTCAGCGTGGCACATGGTGACACATGGTTCACCCGATGGGGATACTGCCTTGCAAGGGGTTGCTTCTGTGTGTCTACCTCGACCTATGCAGCTTCCGTGGAAGCGTTGGCTGCCCTGCCTGTGGACTATCTTCGCAGCCGTCACGTCCGCCGTGTGGTAACCATTTACCGCCGCCTATCCAACAAACCTCTGGTTACAGTCCGTGAGTTCCTCCGCTGCCTCCTTGATTGGAAGCACCTTGAGCCACCCCTTCAATTACCTCCTGTGAAGACATGCACACGGCTGCAATTCATGCTGCCAAAGCCATCTGTGATGAAGAGACACAGGCAGCAGCCATGCCAGCGCTTTGAGGATGTGATTGACCTGCTCCAGTGTCGCTGGTCCAAGAAGCGGCTTCTTGATGCTGCAGAGGTTGTTGTTGACAGGCTGCTAGAGCATGGCAGCGGGGCAGAGATGACACGGCAGGCGGTGCGAGATGCTGCAAGGGGCGCCATTGGTGATACTGGTCTCCTTGACTTTGTCATCAAGTCCCTTGGTGATACCATTGTTGGCAACTATATTGTGCGACGTGTGCCTGATGCTGAAACACGTGTGCTTCACTTTAGCCTTGAGGAATATGAAGAGCCAACACCAGCACTGTTGGATGTTGAGGTAGAGTGCACACCATTGCCACCTGTGGTACGGTGGCCTAGCACAGTGGAAGTAGAGCGAGATCTGCGTGCTGTCTACCGAGCAATGGTCGAGGTGCGCAGTGAGGCAGCACAGGCTGTGCTGGACTGCAAGCACTGGGTGAAGTGGTGGGGCCTTGGGGATGAGTCCGATGACCAGCTGAGGTTTTTCGTTGAGTGGCAACCCCAGCCATGGGAAGCTGCTGAGCTTATACGGCCAATGCCACTGGGGGAGATTGTGGTGGTACCACTCCATGCATCCATGGGTGAGCTTCTTGTCGAGTCAGAGCATGCGCTGCGGGACACTTACTACTTCTTTGAGGAATTCCAGGCTGAAGGGCTGCATGGCATTGCTGGGGAGAAATGGGATCCAGTGATGCTTGGTGGGGCAGAGAATGGTGACACAATCAGCGTGTATGGCAATGGGGCAGACATGGAAACTGAGCTGCGGTGCCATGGTGGACTTGACTTGTGGGAGGTGCGGTGCGTGTGTGGTGCGCAGGATGATGATGGTGAGCGCATGATAGCATGCGATGCTTGCGATGTATGGCACCACACACGTTGCGTGGGCATTGCAGACAGCGAGCCTGTGCCACCATTATTTCTTTGTGTGCTCTGCGGTGGTGCGCTCATGGCGGCTGGACCGATCAATTCTTGAAGAGGCACTAACGCTACCTGAAAGCCAAGTGACTATTCTATTCTTTTCCCCTTTCTTACTTCCCTTCGGTTCATATTTCCAGTGACGATAGTCTGACGAGGTAAACTTAGTTCTGAAACTGCAACTTATGGTGTAAAGTGCGTTGTTTTGGCAGTATGTAGTAACTTCTAATGCTGTGTAGTAAGTAGTAGATGGGAAGCGGGTTTAGACAGTAGACTTGGGGAAGCCCTATCCATGTCGTTAGCAATTCGACTGGAAATTTTGTACCTGATACACTACAGAAGATGATATAGCTAGATGTAAATACATGTTCTGTGATTGTATCTTTTACGGCCTCCCAGTCCCAATTGGTGAAGCTATACAGTGTAATTTTTTGTGCTAGGTATACAATGTAATTTAGCATCAGCAATGACAAAACTGTATCTTTCTTCTGTGCTGGTGTTTGCTTTCTTGTTAGCCA
CDS Sequence
- >LOC_Os03g50780.1
ATGCCGTCCATGCGCGCGCTCGAGCGGCTCGCCTCGTGGCCGACGCCCCCGCCGCCACCTCCGCCGCCGCCGCCGCCGGCGAAGGCGGCGGCGGCGGAGGCGGAGAGGCCGTGTCCGCCGTCGTCCGCCGCCACCACCTCGTCGTCGTCTTCTTCCTCGGCCTCGGCCGCGCCCGCGGCGGCGGGGGCGCCGCGCGTCTACCCGCTGCGGGACTTCCCGGGGAGGGAGGCGGCGGGGCTGGGCGGCGCGTTCCGGGACAACGTGCGGTGGCTGCTGAGGCAGTGGGGCGGCGCCTCCCCCGCCTCCCCCGCCGCCGGGGGTCCTGGGTCGGCGTCGGCGGCGGTGGCGGTGGCGTGGCGGGTGCTCCTCTCCGACGACCGCACCGGCGTCGTCGTCCCCATCTTCGCCGTCGAGGAGCCCGTCGCGTCCTCGCCCAAGCCGCTCTGCGATTACTGCCGCTGGGCGGGTTGGAGCCACCATTGGGTGTCAAAGCGGAAGTACCATTTCATTATTCCGGCGCCCGCTGACTGGGACCGCCAGCTTGCTGCTGATGTGATCCTTGGACGCACCGACCACCTCCTCCATGGCCTGATCCACAGCAATGGTTTTGGTCACCTTGTCATGCTCCGTGGTCGCGATGGCGGCTCCACTGCACTATCTGGCCGTGACATCATGGACATCTGGGATTGCCTCTGCTCCGCTCTTCGTGCCAGGGCTGTGTCTGTGGTGGACTTTTCCCAGAAACGCTCTCTGGATCTTCGTCTCCTGCTCAGCGTGGCACATGGTGACACATGGTTCACCCGATGGGGATACTGCCTTGCAAGGGGTTGCTTCTGTGTGTCTACCTCGACCTATGCAGCTTCCGTGGAAGCGTTGGCTGCCCTGCCTGTGGACTATCTTCGCAGCCGTCACGTCCGCCGTGTGGTAACCATTTACCGCCGCCTATCCAACAAACCTCTGGTTACAGTCCGTGAGTTCCTCCGCTGCCTCCTTGATTGGAAGCACCTTGAGCCACCCCTTCAATTACCTCCTGTGAAGACATGCACACGGCTGCAATTCATGCTGCCAAAGCCATCTGTGATGAAGAGACACAGGCAGCAGCCATGCCAGCGCTTTGAGGATGTGATTGACCTGCTCCAGTGTCGCTGGTCCAAGAAGCGGCTTCTTGATGCTGCAGAGGTTGTTGTTGACAGGCTGCTAGAGCATGGCAGCGGGGCAGAGATGACACGGCAGGCGGTGCGAGATGCTGCAAGGGGCGCCATTGGTGATACTGGTCTCCTTGACTTTGTCATCAAGTCCCTTGGTGATACCATTGTTGGCAACTATATTGTGCGACGTGTGCCTGATGCTGAAACACGTGTGCTTCACTTTAGCCTTGAGGAATATGAAGAGCCAACACCAGCACTGTTGGATGTTGAGGTAGAGTGCACACCATTGCCACCTGTGGTACGGTGGCCTAGCACAGTGGAAGTAGAGCGAGATCTGCGTGCTGTCTACCGAGCAATGGTCGAGGTGCGCAGTGAGGCAGCACAGGCTGTGCTGGACTGCAAGCACTGGGTGAAGTGGTGGGGCCTTGGGGATGAGTCCGATGACCAGCTGAGGTTTTTCGTTGAGTGGCAACCCCAGCCATGGGAAGCTGCTGAGCTTATACGGCCAATGCCACTGGGGGAGATTGTGGTGGTACCACTCCATGCATCCATGGGTGAGCTTCTTGTCGAGTCAGAGCATGCGCTGCGGGACACTTACTACTTCTTTGAGGAATTCCAGGCTGAAGGGCTGCATGGCATTGCTGGGGAGAAATGGGATCCAGTGATGCTTGGTGGGGCAGAGAATGGTGACACAATCAGCGTGTATGGCAATGGGGCAGACATGGAAACTGAGCTGCGGTGCCATGGTGGACTTGACTTGTGGGAGGTGCGGTGCGTGTGTGGTGCGCAGGATGATGATGGTGAGCGCATGATAGCATGCGATGCTTGCGATGTATGGCACCACACACGTTGCGTGGGCATTGCAGACAGCGAGCCTGTGCCACCATTATTTCTTTGTGTGCTCTGCGGTGGTGCGCTCATGGCGGCTGGACCGATCAATTCTTGA
Protein Sequence
- >LOC_Os03g50780.1
MPSMRALERLASWPTPPPPPPPPPPPAKAAAAEAERPCPPSSAATTSSSSSSSASAAPAAAGAPRVYPLRDFPGREAAGLGGAFRDNVRWLLRQWGGASPASPAAGGPGSASAAVAVAWRVLLSDDRTGVVVPIFAVEEPVASSPKPLCDYCRWAGWSHHWVSKRKYHFIIPAPADWDRQLAADVILGRTDHLLHGLIHSNGFGHLVMLRGRDGGSTALSGRDIMDIWDCLCSALRARAVSVVDFSQKRSLDLRLLLSVAHGDTWFTRWGYCLARGCFCVSTSTYAASVEALAALPVDYLRSRHVRRVVTIYRRLSNKPLVTVREFLRCLLDWKHLEPPLQLPPVKTCTRLQFMLPKPSVMKRHRQQPCQRFEDVIDLLQCRWSKKRLLDAAEVVVDRLLEHGSGAEMTRQAVRDAARGAIGDTGLLDFVIKSLGDTIVGNYIVRRVPDAETRVLHFSLEEYEEPTPALLDVEVECTPLPPVVRWPSTVEVERDLRAVYRAMVEVRSEAAQAVLDCKHWVKWWGLGDESDDQLRFFVEWQPQPWEAAELIRPMPLGEIVVVPLHASMGELLVESEHALRDTYYFFEEFQAEGLHGIAGEKWDPVMLGGAENGDTISVYGNGADMETELRCHGGLDLWEVRCVCGAQDDDGERMIACDACDVWHHTRCVGIADSEPVPPLFLCVLCGGALMAAGPINS*