Gene Details:

Functional Descriptions:

  • RNA sequencing (RNA-seq) revealed that the ABA-related genes were involved in the OsHIPL1 regulation of seed vigour in rice.
  • These results indicate that the regulation of seed vigour of OsHIPL1 may be through modulating endogenous ABA levels and altering OsABIs expression during seed germination in rice.
  • Meanwhile, we found that OsHIPL1 interacted with the aquaporin OsPIP1;1, then affected water uptake to promote rice seed germination.
  • Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a Hap1 haplotype of OsHIPL1 that was positively correlated with seed germination.
  • Our findings showed novel insights into the molecular mechanism of OsHIPL1 on seed vigour.
  • The higher levels of endogenous ABA were measured in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants, with two up-regulated ABA biosynthesis genes (OsZEP and OsNCED4) and one down-regulated ABA catabolism gene OsABA8ox3.
  • OsHIPL1 was mainly localized in the plasma membrane and nucleus.
  • The expression of abscisic acid-insensitive 3 (OsABI3), OsABI4 and OsABI5 was significantly up-regulated in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants.
  • OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os03g48540.1
    GTGGTCAACGCCCGCCCACATGCGAGATACGACTCTCCCCCTCCCCTCCTACTCCCGCAAGTCCAAGTGCTGAGCTCCTCCCCCAATAAATCCGCCCAGCCCCGCCGCGCCATGCCCGCGAGACCCCTCCACGGCGACGGCCATGGCGAACAGCAAGAGCCTGCTCCTCTGCTGGTGCTCGCTCCTCCTCCTCCTCCTCGCCGCCGCAGCGCCGCCCGCCCTCGCCCTCCCGCTCTGCACCGACTCCAGGGCGCCGGTGCCGCTGAACGGGACGACGCTGGGCTTCTGCGGCGGCGGGGGGAGCGGGAGCAGCAGCTGCTGCGGCGCCGCGGATGATGCCGCGCTGAGGAAGCGGTTCGAGGCGATGAACGTCTCCGACGCCGCGTGCGCCGGGGTCGTCAAGTCCGTCCTCTGCGCGAAATGTAATCCATATTCGGCTGAGTTGTTCAACTCAAGCTCAAAGATTCGGATGGTTCCCGTCCTGTGCAATGGATCAGCTTCAGCTAGTTCTACTCAATCGAAGGATTCTACACAAGACTACTGCAAACTAGTTTGGGAAACATGCAAGAATGTGACAATACTGAATTCTCCTTTTCAATCTCCTTTGCAAGGTGGTGCAACATTACCTAGTTCATCATCAAAACTTACTGATGTTTGGCAGTCAGAAAATGACTTTTGTACATCATTTGGTGGCTCATCTGACAACCAGTCAGTATGCTTAAATGGAAATGAAGTTTCATTTAGCACTTCAGAACCATCACCCAGTCCTAAAGGGGTGTGTATTGAGAGAATTGGAAACGGGACATACTTGAACATGGCTCCTCATCCGGATGGATCCAACAGAGTTTTCTTGTCTAGCCAAGCAGGTAAAATATGGTTGGCAACTGTCCCAGAACAAGGCTCTGGAGGCATTCTGCAATTTGATGAAGCCAGCCCATTTATTGATCTAACTGATGAAGTCCACTTTGATTCTGAGTTTGGACTCATGGGTATAGCATTTCACCCAAAGTTTGCTACCAATGGGCGCTTCTTTGTTTCTTATAATTGTGACAGAACTCAGTCATCTAACTGTGCTGGTAGGTGTTCATGTAATTCTGATGTTAACTGTGATCCTTCAAAGCTTGGATCTGATAATGGTGCCCAGCCATGCCAGTACCAAGTTGTTGTTGCAGAGTACTCTGCGAAAGTCTCATCATCAAATGTTTCGGAGGCAACATCTGCTAATCCATCCGAGGTTAGAAGGATATTTACAATGGGACTGCCATATACAGCCCACCATGGGGGACAGATACTTTTTGGACCTACAGATGGATATCTGTACCTTATGATGGGTGATGGTGGAAACAAAGGCGACCCTTTTAATTTTTCTCAAAATAAGAGATCACTTTTGGGGAAAATTATGAGGCTTGATGTTGATGGCGTTCAAAGCCAGAGTCAAATCATTAACCAGAGCTTGTGGGGTAATTATTCTGTTCCTAAAGACAACCCATTCAGTGACGACCGAGACTTACAACCAGAGATTTGGGCCTTGGGCTTGAGGAACCCATGGAGATGTAATTTTGATTCTGAGAGGCCTTCCTATTTCTACTGTGCAGATGTTGGGCAGGATTTATATGAAGAGGTAGATTTGATCTCGAAGGGTGGAAACTATGGATGGCGTGCATATGAGGGCCCATACATTTATCATCCAGAATGGACTCCTGGAGGGAATACATCGCTTAATTCTATAAATGCCATCTTCCCTGTTATGGGCTACAGCCATTCTGCTATCAACAAGAACACTGGGTCTGCATCAATTACAGGTGGATTTGTTTATCGAGGGTCTTCTGATCCCTGCCTATATGGAAGGTACATATATGCTGATCTTTACGCGTCAGCAATGTGGACCGGCACAGAGACCCCAGAGAGCAGCGGAAACTACACCTCAACTCTGATTCCGTTCAGCTGCTCCAAGAACTCTCCAATACCCTGCGAATCTGCATCAGGCAGCAACCAACCATCGTTGGGCTACATTTTCTCCTTCGGCGAGGACAACAACAAGGATGTCTTCCTTCTAACATACAAAGGCGTCTACCGAGTTGTCCGGCCTAGCCTCTGCGGCTACACCTGTGCCGCGGAGAAACCAGAGACCAACAACAATGGAACGTCTCCCTCAGGCTCTTCATCATTTGCTTCAGGAAGGAGGATAGGGAAGTTGGCAGTAGTAATGGCGTTTGTTTTGTGTGCATTATTCTTCTGAGATGTCCATCCCTGTTAGCTTGTTATATATCATGTATGGTTTCTTTCGCACCTGCTGTACAGCATTGACGAGCCCTACACGTCTGTGTGACTGTTTGTGATTATTAGTAGTATTTGGTTGTGCTTAGTTCTCAAGTGGTGGGCTTGTGCAATGTAGCATTGTGATGACTGAAAATTAATTAGCCGTGCTTGCCTTTAGGATTGGGCAATGGGCAAGAATATTTGGCAAGTGGAACCACGTTACTGTTATAAATGAAAGTTGTACGGGGGGTAAGCTTTGTTCTGAACCTTTAGTTTTCGGGCTTGTTTGGTTTGGTGCTAAATTATGCCCAACTAATTCATTGGTAATTTTGAATAGTGCTTCTATATGTTTGGATTGGTGTCAAATTTTACCAACACCAGTTCTTAGGTAGTACAAAATTTGTCCACCTAAATTTGGTAGTACCAAAATTTGTCTAAACTTTGATACTACCAAGATTTTAGTAGGGCACCAAACCAAACTGGCCCTTCATCTTCTTTTTGTTTGAAGAAGACAAAAATAAACTCACCATCTGGACATTCTTCTATTCC
CDS Sequence
  • >LOC_Os03g48540.1
    ATGGCGAACAGCAAGAGCCTGCTCCTCTGCTGGTGCTCGCTCCTCCTCCTCCTCCTCGCCGCCGCAGCGCCGCCCGCCCTCGCCCTCCCGCTCTGCACCGACTCCAGGGCGCCGGTGCCGCTGAACGGGACGACGCTGGGCTTCTGCGGCGGCGGGGGGAGCGGGAGCAGCAGCTGCTGCGGCGCCGCGGATGATGCCGCGCTGAGGAAGCGGTTCGAGGCGATGAACGTCTCCGACGCCGCGTGCGCCGGGGTCGTCAAGTCCGTCCTCTGCGCGAAATGTAATCCATATTCGGCTGAGTTGTTCAACTCAAGCTCAAAGATTCGGATGGTTCCCGTCCTGTGCAATGGATCAGCTTCAGCTAGTTCTACTCAATCGAAGGATTCTACACAAGACTACTGCAAACTAGTTTGGGAAACATGCAAGAATGTGACAATACTGAATTCTCCTTTTCAATCTCCTTTGCAAGGTGGTGCAACATTACCTAGTTCATCATCAAAACTTACTGATGTTTGGCAGTCAGAAAATGACTTTTGTACATCATTTGGTGGCTCATCTGACAACCAGTCAGTATGCTTAAATGGAAATGAAGTTTCATTTAGCACTTCAGAACCATCACCCAGTCCTAAAGGGGTGTGTATTGAGAGAATTGGAAACGGGACATACTTGAACATGGCTCCTCATCCGGATGGATCCAACAGAGTTTTCTTGTCTAGCCAAGCAGGTAAAATATGGTTGGCAACTGTCCCAGAACAAGGCTCTGGAGGCATTCTGCAATTTGATGAAGCCAGCCCATTTATTGATCTAACTGATGAAGTCCACTTTGATTCTGAGTTTGGACTCATGGGTATAGCATTTCACCCAAAGTTTGCTACCAATGGGCGCTTCTTTGTTTCTTATAATTGTGACAGAACTCAGTCATCTAACTGTGCTGGTAGGTGTTCATGTAATTCTGATGTTAACTGTGATCCTTCAAAGCTTGGATCTGATAATGGTGCCCAGCCATGCCAGTACCAAGTTGTTGTTGCAGAGTACTCTGCGAAAGTCTCATCATCAAATGTTTCGGAGGCAACATCTGCTAATCCATCCGAGGTTAGAAGGATATTTACAATGGGACTGCCATATACAGCCCACCATGGGGGACAGATACTTTTTGGACCTACAGATGGATATCTGTACCTTATGATGGGTGATGGTGGAAACAAAGGCGACCCTTTTAATTTTTCTCAAAATAAGAGATCACTTTTGGGGAAAATTATGAGGCTTGATGTTGATGGCGTTCAAAGCCAGAGTCAAATCATTAACCAGAGCTTGTGGGGTAATTATTCTGTTCCTAAAGACAACCCATTCAGTGACGACCGAGACTTACAACCAGAGATTTGGGCCTTGGGCTTGAGGAACCCATGGAGATGTAATTTTGATTCTGAGAGGCCTTCCTATTTCTACTGTGCAGATGTTGGGCAGGATTTATATGAAGAGGTAGATTTGATCTCGAAGGGTGGAAACTATGGATGGCGTGCATATGAGGGCCCATACATTTATCATCCAGAATGGACTCCTGGAGGGAATACATCGCTTAATTCTATAAATGCCATCTTCCCTGTTATGGGCTACAGCCATTCTGCTATCAACAAGAACACTGGGTCTGCATCAATTACAGGTGGATTTGTTTATCGAGGGTCTTCTGATCCCTGCCTATATGGAAGGTACATATATGCTGATCTTTACGCGTCAGCAATGTGGACCGGCACAGAGACCCCAGAGAGCAGCGGAAACTACACCTCAACTCTGATTCCGTTCAGCTGCTCCAAGAACTCTCCAATACCCTGCGAATCTGCATCAGGCAGCAACCAACCATCGTTGGGCTACATTTTCTCCTTCGGCGAGGACAACAACAAGGATGTCTTCCTTCTAACATACAAAGGCGTCTACCGAGTTGTCCGGCCTAGCCTCTGCGGCTACACCTGTGCCGCGGAGAAACCAGAGACCAACAACAATGGAACGTCTCCCTCAGGCTCTTCATCATTTGCTTCAGGAAGGAGGATAGGGAAGTTGGCAGTAGTAATGGCGTTTGTTTTGTGTGCATTATTCTTCTGA
Protein Sequence
  • >LOC_Os03g48540.1
    MANSKSLLLCWCSLLLLLLAAAAPPALALPLCTDSRAPVPLNGTTLGFCGGGGSGSSSCCGAADDAALRKRFEAMNVSDAACAGVVKSVLCAKCNPYSAELFNSSSKIRMVPVLCNGSASASSTQSKDSTQDYCKLVWETCKNVTILNSPFQSPLQGGATLPSSSSKLTDVWQSENDFCTSFGGSSDNQSVCLNGNEVSFSTSEPSPSPKGVCIERIGNGTYLNMAPHPDGSNRVFLSSQAGKIWLATVPEQGSGGILQFDEASPFIDLTDEVHFDSEFGLMGIAFHPKFATNGRFFVSYNCDRTQSSNCAGRCSCNSDVNCDPSKLGSDNGAQPCQYQVVVAEYSAKVSSSNVSEATSANPSEVRRIFTMGLPYTAHHGGQILFGPTDGYLYLMMGDGGNKGDPFNFSQNKRSLLGKIMRLDVDGVQSQSQIINQSLWGNYSVPKDNPFSDDRDLQPEIWALGLRNPWRCNFDSERPSYFYCADVGQDLYEEVDLISKGGNYGWRAYEGPYIYHPEWTPGGNTSLNSINAIFPVMGYSHSAINKNTGSASITGGFVYRGSSDPCLYGRYIYADLYASAMWTGTETPESSGNYTSTLIPFSCSKNSPIPCESASGSNQPSLGYIFSFGEDNNKDVFLLTYKGVYRVVRPSLCGYTCAAEKPETNNNGTSPSGSSSFASGRRIGKLAVVMAFVLCALFF*