Gene Details:
- MSU gene ID: LOC_Os03g48540
- RAPdb gene ID: Os03g0691800
- Gene Symbol: OsHIPL1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- RNA sequencing (RNA-seq) revealed that the ABA-related genes were involved in the OsHIPL1 regulation of seed vigour in rice.
- These results indicate that the regulation of seed vigour of OsHIPL1 may be through modulating endogenous ABA levels and altering OsABIs expression during seed germination in rice.
- Meanwhile, we found that OsHIPL1 interacted with the aquaporin OsPIP1;1, then affected water uptake to promote rice seed germination.
- Based on analysis of single-nucleotide polymorphism data of rice accessions, we identified a Hap1 haplotype of OsHIPL1 that was positively correlated with seed germination.
- Our findings showed novel insights into the molecular mechanism of OsHIPL1 on seed vigour.
- The higher levels of endogenous ABA were measured in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants, with two up-regulated ABA biosynthesis genes (OsZEP and OsNCED4) and one down-regulated ABA catabolism gene OsABA8ox3.
- OsHIPL1 was mainly localized in the plasma membrane and nucleus.
- The expression of abscisic acid-insensitive 3 (OsABI3), OsABI4 and OsABI5 was significantly up-regulated in germinating seeds of OsHIPL1 mutants and NIL-qsv3 line compared to IR26 plants.
- OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.
Function-related keywords:
- seed , seed-germination , ABA , nucleus , abscisic-acid , plasma-membrane , ABA-biosynthesis , ABA-catabolism , seed-vigour
Literature:
- OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice . DOI: 10.1111/pbi.13812 ; PMID: 35315188
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g48540.1
GTGGTCAACGCCCGCCCACATGCGAGATACGACTCTCCCCCTCCCCTCCTACTCCCGCAAGTCCAAGTGCTGAGCTCCTCCCCCAATAAATCCGCCCAGCCCCGCCGCGCCATGCCCGCGAGACCCCTCCACGGCGACGGCCATGGCGAACAGCAAGAGCCTGCTCCTCTGCTGGTGCTCGCTCCTCCTCCTCCTCCTCGCCGCCGCAGCGCCGCCCGCCCTCGCCCTCCCGCTCTGCACCGACTCCAGGGCGCCGGTGCCGCTGAACGGGACGACGCTGGGCTTCTGCGGCGGCGGGGGGAGCGGGAGCAGCAGCTGCTGCGGCGCCGCGGATGATGCCGCGCTGAGGAAGCGGTTCGAGGCGATGAACGTCTCCGACGCCGCGTGCGCCGGGGTCGTCAAGTCCGTCCTCTGCGCGAAATGTAATCCATATTCGGCTGAGTTGTTCAACTCAAGCTCAAAGATTCGGATGGTTCCCGTCCTGTGCAATGGATCAGCTTCAGCTAGTTCTACTCAATCGAAGGATTCTACACAAGACTACTGCAAACTAGTTTGGGAAACATGCAAGAATGTGACAATACTGAATTCTCCTTTTCAATCTCCTTTGCAAGGTGGTGCAACATTACCTAGTTCATCATCAAAACTTACTGATGTTTGGCAGTCAGAAAATGACTTTTGTACATCATTTGGTGGCTCATCTGACAACCAGTCAGTATGCTTAAATGGAAATGAAGTTTCATTTAGCACTTCAGAACCATCACCCAGTCCTAAAGGGGTGTGTATTGAGAGAATTGGAAACGGGACATACTTGAACATGGCTCCTCATCCGGATGGATCCAACAGAGTTTTCTTGTCTAGCCAAGCAGGTAAAATATGGTTGGCAACTGTCCCAGAACAAGGCTCTGGAGGCATTCTGCAATTTGATGAAGCCAGCCCATTTATTGATCTAACTGATGAAGTCCACTTTGATTCTGAGTTTGGACTCATGGGTATAGCATTTCACCCAAAGTTTGCTACCAATGGGCGCTTCTTTGTTTCTTATAATTGTGACAGAACTCAGTCATCTAACTGTGCTGGTAGGTGTTCATGTAATTCTGATGTTAACTGTGATCCTTCAAAGCTTGGATCTGATAATGGTGCCCAGCCATGCCAGTACCAAGTTGTTGTTGCAGAGTACTCTGCGAAAGTCTCATCATCAAATGTTTCGGAGGCAACATCTGCTAATCCATCCGAGGTTAGAAGGATATTTACAATGGGACTGCCATATACAGCCCACCATGGGGGACAGATACTTTTTGGACCTACAGATGGATATCTGTACCTTATGATGGGTGATGGTGGAAACAAAGGCGACCCTTTTAATTTTTCTCAAAATAAGAGATCACTTTTGGGGAAAATTATGAGGCTTGATGTTGATGGCGTTCAAAGCCAGAGTCAAATCATTAACCAGAGCTTGTGGGGTAATTATTCTGTTCCTAAAGACAACCCATTCAGTGACGACCGAGACTTACAACCAGAGATTTGGGCCTTGGGCTTGAGGAACCCATGGAGATGTAATTTTGATTCTGAGAGGCCTTCCTATTTCTACTGTGCAGATGTTGGGCAGGATTTATATGAAGAGGTAGATTTGATCTCGAAGGGTGGAAACTATGGATGGCGTGCATATGAGGGCCCATACATTTATCATCCAGAATGGACTCCTGGAGGGAATACATCGCTTAATTCTATAAATGCCATCTTCCCTGTTATGGGCTACAGCCATTCTGCTATCAACAAGAACACTGGGTCTGCATCAATTACAGGTGGATTTGTTTATCGAGGGTCTTCTGATCCCTGCCTATATGGAAGGTACATATATGCTGATCTTTACGCGTCAGCAATGTGGACCGGCACAGAGACCCCAGAGAGCAGCGGAAACTACACCTCAACTCTGATTCCGTTCAGCTGCTCCAAGAACTCTCCAATACCCTGCGAATCTGCATCAGGCAGCAACCAACCATCGTTGGGCTACATTTTCTCCTTCGGCGAGGACAACAACAAGGATGTCTTCCTTCTAACATACAAAGGCGTCTACCGAGTTGTCCGGCCTAGCCTCTGCGGCTACACCTGTGCCGCGGAGAAACCAGAGACCAACAACAATGGAACGTCTCCCTCAGGCTCTTCATCATTTGCTTCAGGAAGGAGGATAGGGAAGTTGGCAGTAGTAATGGCGTTTGTTTTGTGTGCATTATTCTTCTGAGATGTCCATCCCTGTTAGCTTGTTATATATCATGTATGGTTTCTTTCGCACCTGCTGTACAGCATTGACGAGCCCTACACGTCTGTGTGACTGTTTGTGATTATTAGTAGTATTTGGTTGTGCTTAGTTCTCAAGTGGTGGGCTTGTGCAATGTAGCATTGTGATGACTGAAAATTAATTAGCCGTGCTTGCCTTTAGGATTGGGCAATGGGCAAGAATATTTGGCAAGTGGAACCACGTTACTGTTATAAATGAAAGTTGTACGGGGGGTAAGCTTTGTTCTGAACCTTTAGTTTTCGGGCTTGTTTGGTTTGGTGCTAAATTATGCCCAACTAATTCATTGGTAATTTTGAATAGTGCTTCTATATGTTTGGATTGGTGTCAAATTTTACCAACACCAGTTCTTAGGTAGTACAAAATTTGTCCACCTAAATTTGGTAGTACCAAAATTTGTCTAAACTTTGATACTACCAAGATTTTAGTAGGGCACCAAACCAAACTGGCCCTTCATCTTCTTTTTGTTTGAAGAAGACAAAAATAAACTCACCATCTGGACATTCTTCTATTCC
CDS Sequence
- >LOC_Os03g48540.1
ATGGCGAACAGCAAGAGCCTGCTCCTCTGCTGGTGCTCGCTCCTCCTCCTCCTCCTCGCCGCCGCAGCGCCGCCCGCCCTCGCCCTCCCGCTCTGCACCGACTCCAGGGCGCCGGTGCCGCTGAACGGGACGACGCTGGGCTTCTGCGGCGGCGGGGGGAGCGGGAGCAGCAGCTGCTGCGGCGCCGCGGATGATGCCGCGCTGAGGAAGCGGTTCGAGGCGATGAACGTCTCCGACGCCGCGTGCGCCGGGGTCGTCAAGTCCGTCCTCTGCGCGAAATGTAATCCATATTCGGCTGAGTTGTTCAACTCAAGCTCAAAGATTCGGATGGTTCCCGTCCTGTGCAATGGATCAGCTTCAGCTAGTTCTACTCAATCGAAGGATTCTACACAAGACTACTGCAAACTAGTTTGGGAAACATGCAAGAATGTGACAATACTGAATTCTCCTTTTCAATCTCCTTTGCAAGGTGGTGCAACATTACCTAGTTCATCATCAAAACTTACTGATGTTTGGCAGTCAGAAAATGACTTTTGTACATCATTTGGTGGCTCATCTGACAACCAGTCAGTATGCTTAAATGGAAATGAAGTTTCATTTAGCACTTCAGAACCATCACCCAGTCCTAAAGGGGTGTGTATTGAGAGAATTGGAAACGGGACATACTTGAACATGGCTCCTCATCCGGATGGATCCAACAGAGTTTTCTTGTCTAGCCAAGCAGGTAAAATATGGTTGGCAACTGTCCCAGAACAAGGCTCTGGAGGCATTCTGCAATTTGATGAAGCCAGCCCATTTATTGATCTAACTGATGAAGTCCACTTTGATTCTGAGTTTGGACTCATGGGTATAGCATTTCACCCAAAGTTTGCTACCAATGGGCGCTTCTTTGTTTCTTATAATTGTGACAGAACTCAGTCATCTAACTGTGCTGGTAGGTGTTCATGTAATTCTGATGTTAACTGTGATCCTTCAAAGCTTGGATCTGATAATGGTGCCCAGCCATGCCAGTACCAAGTTGTTGTTGCAGAGTACTCTGCGAAAGTCTCATCATCAAATGTTTCGGAGGCAACATCTGCTAATCCATCCGAGGTTAGAAGGATATTTACAATGGGACTGCCATATACAGCCCACCATGGGGGACAGATACTTTTTGGACCTACAGATGGATATCTGTACCTTATGATGGGTGATGGTGGAAACAAAGGCGACCCTTTTAATTTTTCTCAAAATAAGAGATCACTTTTGGGGAAAATTATGAGGCTTGATGTTGATGGCGTTCAAAGCCAGAGTCAAATCATTAACCAGAGCTTGTGGGGTAATTATTCTGTTCCTAAAGACAACCCATTCAGTGACGACCGAGACTTACAACCAGAGATTTGGGCCTTGGGCTTGAGGAACCCATGGAGATGTAATTTTGATTCTGAGAGGCCTTCCTATTTCTACTGTGCAGATGTTGGGCAGGATTTATATGAAGAGGTAGATTTGATCTCGAAGGGTGGAAACTATGGATGGCGTGCATATGAGGGCCCATACATTTATCATCCAGAATGGACTCCTGGAGGGAATACATCGCTTAATTCTATAAATGCCATCTTCCCTGTTATGGGCTACAGCCATTCTGCTATCAACAAGAACACTGGGTCTGCATCAATTACAGGTGGATTTGTTTATCGAGGGTCTTCTGATCCCTGCCTATATGGAAGGTACATATATGCTGATCTTTACGCGTCAGCAATGTGGACCGGCACAGAGACCCCAGAGAGCAGCGGAAACTACACCTCAACTCTGATTCCGTTCAGCTGCTCCAAGAACTCTCCAATACCCTGCGAATCTGCATCAGGCAGCAACCAACCATCGTTGGGCTACATTTTCTCCTTCGGCGAGGACAACAACAAGGATGTCTTCCTTCTAACATACAAAGGCGTCTACCGAGTTGTCCGGCCTAGCCTCTGCGGCTACACCTGTGCCGCGGAGAAACCAGAGACCAACAACAATGGAACGTCTCCCTCAGGCTCTTCATCATTTGCTTCAGGAAGGAGGATAGGGAAGTTGGCAGTAGTAATGGCGTTTGTTTTGTGTGCATTATTCTTCTGA
Protein Sequence
- >LOC_Os03g48540.1
MANSKSLLLCWCSLLLLLLAAAAPPALALPLCTDSRAPVPLNGTTLGFCGGGGSGSSSCCGAADDAALRKRFEAMNVSDAACAGVVKSVLCAKCNPYSAELFNSSSKIRMVPVLCNGSASASSTQSKDSTQDYCKLVWETCKNVTILNSPFQSPLQGGATLPSSSSKLTDVWQSENDFCTSFGGSSDNQSVCLNGNEVSFSTSEPSPSPKGVCIERIGNGTYLNMAPHPDGSNRVFLSSQAGKIWLATVPEQGSGGILQFDEASPFIDLTDEVHFDSEFGLMGIAFHPKFATNGRFFVSYNCDRTQSSNCAGRCSCNSDVNCDPSKLGSDNGAQPCQYQVVVAEYSAKVSSSNVSEATSANPSEVRRIFTMGLPYTAHHGGQILFGPTDGYLYLMMGDGGNKGDPFNFSQNKRSLLGKIMRLDVDGVQSQSQIINQSLWGNYSVPKDNPFSDDRDLQPEIWALGLRNPWRCNFDSERPSYFYCADVGQDLYEEVDLISKGGNYGWRAYEGPYIYHPEWTPGGNTSLNSINAIFPVMGYSHSAINKNTGSASITGGFVYRGSSDPCLYGRYIYADLYASAMWTGTETPESSGNYTSTLIPFSCSKNSPIPCESASGSNQPSLGYIFSFGEDNNKDVFLLTYKGVYRVVRPSLCGYTCAAEKPETNNNGTSPSGSSSFASGRRIGKLAVVMAFVLCALFF*