Gene Details:

Functional Descriptions:

  • The findings that OsXYN1 is involved in plant cell wall deposition and regulates plant growth and development help shed light on the functions of the rice GH10 family.
  • Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.
  • Map-based cloning of the ss1 mutant identified the candidate gene as OsXYN1 (LOC_03g47010), which encodes a xylanase-like protein belonging to the glycoside hydrolase 10 (GH10) family.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os03g47010.1
    CCAGCTCAAGCGTGGTTGATTAGTTGACTGATCACGAGCAGTGACGAGTTGGTTGTGATCGACGAGCTAGTTTTGTTGTGTGCAATGGCGATCGGCGGCGACGCGGGGCAGGTGGTTGGCGATGGCGGCGCCGGTGCCGGCGACGACAACATCATCCTGAACCCGGAGTTCGACAGCGGGCTGGACAACTGGTCCGGGAGCGGGTGCAAGATCGAGCTGCACGACTCGCTCGACGACGGCAAGGTGCTCGCCGTCAGCGGCAAGTACTTCGTGGCGGCGACGGGGAGGACGGACACGTGGAACGGCGTGCAGCAGGACGTCACGTCGCGGCTGCAGCGGAAGCTGCTGTACGAGGTCGCCGCCACGGTGCGCCTCTCCGGCGCCGCCGCGACGCCGTCGCCGTGCGAGGTCCGGGCCACCGTCGCCGTGCAGAACACCGACGGCCGGCAGCAATACATCAGCGTCGCCAAGTCGCCGGCGGTGTCGGACAAGGAGTGGGTGCAGCTGCAGGGGAAGTTCCTGCTGAACGGCACGGTGGCCAAGGCGGCGATCTACATCGAGGGCCCACCTGCCGGCGTCGACCTGCTGCTCGACAGCCTTGTGGTCAAGCACGCCCAGAAGGCCACGCCGGCGCCGGCGCCGGACTTCAAGAACCTGGAATATGGCGCGAACATCCTGCAGAACAGCGACCTGGACGACGGCGTGAACGGGTGGTTCGGGCTCGGCTCGTGCGCGCTCTCCGTCCACGGCGGTGCGCCGCGCGTGCTCCCGCCCATGGCGCGGCAGTCGCTGTCGCCGCTCGACGGCGACGACGGCGACGGCGACGAGCCGCTCAACGGGAAGCACATCCACGTCACGAACCGGGCGCAGACGTGGATGGGCCCCGCGCAGGTCATCACCGACAGGGTGACGCCGTACGCGACGTACCAGGTGTCGGCGTGGGTGCGCGTCGGCGGGCAGCAGGCGGCCGGCAAGCCGCAGAACATCAACGTCGCCGTCGCCGTCGACAGCCAGTGGCTCAACGGCGGGCAGGTCATGGCGCTGGACGAGCGGTGGTACGAGATCGGCGGGTCGTTCCGCGTCGAGTCGTCGTCCACGCCGCCGTCGCGCGTGATGCTCTACGTCCAGGGCCCCGACCCCGGCGTCGACCTCATGGTCGCCGGCCTCCGCGTGTTCCCCGTCGACCGCAAGGCCCGCGCCAAGCACCTCCGCAAGCTCACCGACAAGGTGCGCAAGCGCGACGTGGTGGTGAAGGTGACGGCGGCGGCGGGCGGCGCCGCCGCCGCCGACGGCGTGGAGGTGCGGGTGCGGCAGGTGTCGAACAGCTTCCCGCTGGGCGCGTGCATCATGCGGACCAACATGGACAACGAGGACTACGTGGACTTCTTCACCAAGCACTTCAACTGGGCGGTGTTCGGGAACGAGCTCAAGTGGTACTGGACGGAGCCGGAGAAGGGGCAGCTCAACTACGCCGACGCCGACGACCTCCTCAAGCTCTGCGCCGACCACGGCATGTGCGTGCGCGGCCACTGCATCTTCTGGGAGGTGGACAGCGCGGTGCAGCAGTGGGTGAAGGCGCTGCCCGCCGACGAGCTCTCCGCCGCCGTGGCCAGCCGCATCAACGGCCTCCTCACCCGGTACAAGGGCAAGTTCCGGCACTACGACGTCAACAACGAGATGCTGCACGGGTCCTTCTACCAGGACAAGCTCGGCGCCGGCGCGCGCGCCGCCATGTTCCGGGCGGCGAGCGAGCTGGACCCGGATGCGCTGCTGTTCGTCAACGACTACAACGTCGAGGGCGCGTGCGTCGACGTCCGCGCGACGCCCGAGGCGTACATCGCGCAGGTGACCGGGCTGCAGGAGCAGGGCGCGGCGGTGGGCGGCGTCGGGCTGCAGGGCCACGTGACCGCGCCCGTCGGCGCCGTCGTGCGCGCGGCGCTCGACCGGCTCGCCGTGCTGGGCCTGCCGCTGTGGTTCACGGAGCTGGACGTGTCGTCGGCGAACGAGCACGTCCGCGCCGACGACCTGGAGGCGATGCTCCGGGAGGCGTACGCGCACCCGGCGGTGGACGGCGTCGTGCTCTGGGGGTTCTGGGAGCTCTCCATGAGCCGCGACGACGCCCACCTCGTCGACGCCGAGGGGGAGGTGAACGAGGCCGGCCGCCGCCTGCTGCAGCTCAAGCGGGAGTGGCTCACCCGCGCGCACGGCCGCGCCGACGGCAACGGCGAGTTCAGGTTCCGGGGCCACCACGGCGCGTACCACGTCGACGTCGTCACGCCCGCCGGCGCCAAGATCTCCCAGGAGTTCACCGTCGACAAGGATGACGCGCCGCTCGTGCTCAACATCACCGTGTGATAATAAGAAGAAAAATGAAGTTTATTATTCTACATAATTAATTAATTAAGCCCAGAACGCCGTGCTACTAGAACAATTAACTAAATAATGGGCTAGTCAAATTCATTTTTTTTATCATTAACTTGATCATGATATATACGCTCACAAAAATATGGGATATATATCATAATTGTCGCGAAGAATATGCAACTATATATGCAAGCGTGAATATCTACATATACATATAAAA
CDS Sequence
  • >LOC_Os03g47010.1
    ATGGCGATCGGCGGCGACGCGGGGCAGGTGGTTGGCGATGGCGGCGCCGGTGCCGGCGACGACAACATCATCCTGAACCCGGAGTTCGACAGCGGGCTGGACAACTGGTCCGGGAGCGGGTGCAAGATCGAGCTGCACGACTCGCTCGACGACGGCAAGGTGCTCGCCGTCAGCGGCAAGTACTTCGTGGCGGCGACGGGGAGGACGGACACGTGGAACGGCGTGCAGCAGGACGTCACGTCGCGGCTGCAGCGGAAGCTGCTGTACGAGGTCGCCGCCACGGTGCGCCTCTCCGGCGCCGCCGCGACGCCGTCGCCGTGCGAGGTCCGGGCCACCGTCGCCGTGCAGAACACCGACGGCCGGCAGCAATACATCAGCGTCGCCAAGTCGCCGGCGGTGTCGGACAAGGAGTGGGTGCAGCTGCAGGGGAAGTTCCTGCTGAACGGCACGGTGGCCAAGGCGGCGATCTACATCGAGGGCCCACCTGCCGGCGTCGACCTGCTGCTCGACAGCCTTGTGGTCAAGCACGCCCAGAAGGCCACGCCGGCGCCGGCGCCGGACTTCAAGAACCTGGAATATGGCGCGAACATCCTGCAGAACAGCGACCTGGACGACGGCGTGAACGGGTGGTTCGGGCTCGGCTCGTGCGCGCTCTCCGTCCACGGCGGTGCGCCGCGCGTGCTCCCGCCCATGGCGCGGCAGTCGCTGTCGCCGCTCGACGGCGACGACGGCGACGGCGACGAGCCGCTCAACGGGAAGCACATCCACGTCACGAACCGGGCGCAGACGTGGATGGGCCCCGCGCAGGTCATCACCGACAGGGTGACGCCGTACGCGACGTACCAGGTGTCGGCGTGGGTGCGCGTCGGCGGGCAGCAGGCGGCCGGCAAGCCGCAGAACATCAACGTCGCCGTCGCCGTCGACAGCCAGTGGCTCAACGGCGGGCAGGTCATGGCGCTGGACGAGCGGTGGTACGAGATCGGCGGGTCGTTCCGCGTCGAGTCGTCGTCCACGCCGCCGTCGCGCGTGATGCTCTACGTCCAGGGCCCCGACCCCGGCGTCGACCTCATGGTCGCCGGCCTCCGCGTGTTCCCCGTCGACCGCAAGGCCCGCGCCAAGCACCTCCGCAAGCTCACCGACAAGGTGCGCAAGCGCGACGTGGTGGTGAAGGTGACGGCGGCGGCGGGCGGCGCCGCCGCCGCCGACGGCGTGGAGGTGCGGGTGCGGCAGGTGTCGAACAGCTTCCCGCTGGGCGCGTGCATCATGCGGACCAACATGGACAACGAGGACTACGTGGACTTCTTCACCAAGCACTTCAACTGGGCGGTGTTCGGGAACGAGCTCAAGTGGTACTGGACGGAGCCGGAGAAGGGGCAGCTCAACTACGCCGACGCCGACGACCTCCTCAAGCTCTGCGCCGACCACGGCATGTGCGTGCGCGGCCACTGCATCTTCTGGGAGGTGGACAGCGCGGTGCAGCAGTGGGTGAAGGCGCTGCCCGCCGACGAGCTCTCCGCCGCCGTGGCCAGCCGCATCAACGGCCTCCTCACCCGGTACAAGGGCAAGTTCCGGCACTACGACGTCAACAACGAGATGCTGCACGGGTCCTTCTACCAGGACAAGCTCGGCGCCGGCGCGCGCGCCGCCATGTTCCGGGCGGCGAGCGAGCTGGACCCGGATGCGCTGCTGTTCGTCAACGACTACAACGTCGAGGGCGCGTGCGTCGACGTCCGCGCGACGCCCGAGGCGTACATCGCGCAGGTGACCGGGCTGCAGGAGCAGGGCGCGGCGGTGGGCGGCGTCGGGCTGCAGGGCCACGTGACCGCGCCCGTCGGCGCCGTCGTGCGCGCGGCGCTCGACCGGCTCGCCGTGCTGGGCCTGCCGCTGTGGTTCACGGAGCTGGACGTGTCGTCGGCGAACGAGCACGTCCGCGCCGACGACCTGGAGGCGATGCTCCGGGAGGCGTACGCGCACCCGGCGGTGGACGGCGTCGTGCTCTGGGGGTTCTGGGAGCTCTCCATGAGCCGCGACGACGCCCACCTCGTCGACGCCGAGGGGGAGGTGAACGAGGCCGGCCGCCGCCTGCTGCAGCTCAAGCGGGAGTGGCTCACCCGCGCGCACGGCCGCGCCGACGGCAACGGCGAGTTCAGGTTCCGGGGCCACCACGGCGCGTACCACGTCGACGTCGTCACGCCCGCCGGCGCCAAGATCTCCCAGGAGTTCACCGTCGACAAGGATGACGCGCCGCTCGTGCTCAACATCACCGTGTGA
Protein Sequence
  • >LOC_Os03g47010.1
    MAIGGDAGQVVGDGGAGAGDDNIILNPEFDSGLDNWSGSGCKIELHDSLDDGKVLAVSGKYFVAATGRTDTWNGVQQDVTSRLQRKLLYEVAATVRLSGAAATPSPCEVRATVAVQNTDGRQQYISVAKSPAVSDKEWVQLQGKFLLNGTVAKAAIYIEGPPAGVDLLLDSLVVKHAQKATPAPAPDFKNLEYGANILQNSDLDDGVNGWFGLGSCALSVHGGAPRVLPPMARQSLSPLDGDDGDGDEPLNGKHIHVTNRAQTWMGPAQVITDRVTPYATYQVSAWVRVGGQQAAGKPQNINVAVAVDSQWLNGGQVMALDERWYEIGGSFRVESSSTPPSRVMLYVQGPDPGVDLMVAGLRVFPVDRKARAKHLRKLTDKVRKRDVVVKVTAAAGGAAAADGVEVRVRQVSNSFPLGACIMRTNMDNEDYVDFFTKHFNWAVFGNELKWYWTEPEKGQLNYADADDLLKLCADHGMCVRGHCIFWEVDSAVQQWVKALPADELSAAVASRINGLLTRYKGKFRHYDVNNEMLHGSFYQDKLGAGARAAMFRAASELDPDALLFVNDYNVEGACVDVRATPEAYIAQVTGLQEQGAAVGGVGLQGHVTAPVGAVVRAALDRLAVLGLPLWFTELDVSSANEHVRADDLEAMLREAYAHPAVDGVVLWGFWELSMSRDDAHLVDAEGEVNEAGRRLLQLKREWLTRAHGRADGNGEFRFRGHHGAYHVDVVTPAGAKISQEFTVDKDDAPLVLNITV*