Information report for OsXYN1
Gene Details
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Functional Descriptions
- The findings that OsXYN1 is involved in plant cell wall deposition and regulates plant growth and development help shed light on the functions of the rice GH10 family.
- Membrane-associated xylanase-like protein OsXYN1 is required for normal cell wall deposition and plant development in rice.
- Map-based cloning of the ss1 mutant identified the candidate gene as OsXYN1 (LOC_03g47010), which encodes a xylanase-like protein belonging to the glycoside hydrolase 10 (GH10) family.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q84R74
- EMBL: AP014959, DP000009
- AlphaFoldDB: Q84R74
- EnsemblPlants: Os03t0672900-01
- Gramene: Os03t0672900-01
- KEGG: osa:4333697
- Orthologous matrix: IFWEVEN
- InterPro: IPR001000, IPR003305, IPR008979
- PANTHER: PTHR31490, PTHR31490:SF87
- SUPFAM: SSF49785, SSF51445
- PROSITE: PS00591, PS51760
- Gene3D: 2.60.120.260, 3.20.20.80
- OrthoDB: Q84R74
- SWISS-MODEL: Q84R74
- eggNOG: ENOG502S0Y4
Sequences
cDNA Sequence
- >LOC_Os03g47010.1
CCAGCTCAAGCGTGGTTGATTAGTTGACTGATCACGAGCAGTGACGAGTTGGTTGTGATCGACGAGCTAGTTTTGTTGTGTGCAATGGCGATCGGCGGCGACGCGGGGCAGGTGGTTGGCGATGGCGGCGCCGGTGCCGGCGACGACAACATCATCCTGAACCCGGAGTTCGACAGCGGGCTGGACAACTGGTCCGGGAGCGGGTGCAAGATCGAGCTGCACGACTCGCTCGACGACGGCAAGGTGCTCGCCGTCAGCGGCAAGTACTTCGTGGCGGCGACGGGGAGGACGGACACGTGGAACGGCGTGCAGCAGGACGTCACGTCGCGGCTGCAGCGGAAGCTGCTGTACGAGGTCGCCGCCACGGTGCGCCTCTCCGGCGCCGCCGCGACGCCGTCGCCGTGCGAGGTCCGGGCCACCGTCGCCGTGCAGAACACCGACGGCCGGCAGCAATACATCAGCGTCGCCAAGTCGCCGGCGGTGTCGGACAAGGAGTGGGTGCAGCTGCAGGGGAAGTTCCTGCTGAACGGCACGGTGGCCAAGGCGGCGATCTACATCGAGGGCCCACCTGCCGGCGTCGACCTGCTGCTCGACAGCCTTGTGGTCAAGCACGCCCAGAAGGCCACGCCGGCGCCGGCGCCGGACTTCAAGAACCTGGAATATGGCGCGAACATCCTGCAGAACAGCGACCTGGACGACGGCGTGAACGGGTGGTTCGGGCTCGGCTCGTGCGCGCTCTCCGTCCACGGCGGTGCGCCGCGCGTGCTCCCGCCCATGGCGCGGCAGTCGCTGTCGCCGCTCGACGGCGACGACGGCGACGGCGACGAGCCGCTCAACGGGAAGCACATCCACGTCACGAACCGGGCGCAGACGTGGATGGGCCCCGCGCAGGTCATCACCGACAGGGTGACGCCGTACGCGACGTACCAGGTGTCGGCGTGGGTGCGCGTCGGCGGGCAGCAGGCGGCCGGCAAGCCGCAGAACATCAACGTCGCCGTCGCCGTCGACAGCCAGTGGCTCAACGGCGGGCAGGTCATGGCGCTGGACGAGCGGTGGTACGAGATCGGCGGGTCGTTCCGCGTCGAGTCGTCGTCCACGCCGCCGTCGCGCGTGATGCTCTACGTCCAGGGCCCCGACCCCGGCGTCGACCTCATGGTCGCCGGCCTCCGCGTGTTCCCCGTCGACCGCAAGGCCCGCGCCAAGCACCTCCGCAAGCTCACCGACAAGGTGCGCAAGCGCGACGTGGTGGTGAAGGTGACGGCGGCGGCGGGCGGCGCCGCCGCCGCCGACGGCGTGGAGGTGCGGGTGCGGCAGGTGTCGAACAGCTTCCCGCTGGGCGCGTGCATCATGCGGACCAACATGGACAACGAGGACTACGTGGACTTCTTCACCAAGCACTTCAACTGGGCGGTGTTCGGGAACGAGCTCAAGTGGTACTGGACGGAGCCGGAGAAGGGGCAGCTCAACTACGCCGACGCCGACGACCTCCTCAAGCTCTGCGCCGACCACGGCATGTGCGTGCGCGGCCACTGCATCTTCTGGGAGGTGGACAGCGCGGTGCAGCAGTGGGTGAAGGCGCTGCCCGCCGACGAGCTCTCCGCCGCCGTGGCCAGCCGCATCAACGGCCTCCTCACCCGGTACAAGGGCAAGTTCCGGCACTACGACGTCAACAACGAGATGCTGCACGGGTCCTTCTACCAGGACAAGCTCGGCGCCGGCGCGCGCGCCGCCATGTTCCGGGCGGCGAGCGAGCTGGACCCGGATGCGCTGCTGTTCGTCAACGACTACAACGTCGAGGGCGCGTGCGTCGACGTCCGCGCGACGCCCGAGGCGTACATCGCGCAGGTGACCGGGCTGCAGGAGCAGGGCGCGGCGGTGGGCGGCGTCGGGCTGCAGGGCCACGTGACCGCGCCCGTCGGCGCCGTCGTGCGCGCGGCGCTCGACCGGCTCGCCGTGCTGGGCCTGCCGCTGTGGTTCACGGAGCTGGACGTGTCGTCGGCGAACGAGCACGTCCGCGCCGACGACCTGGAGGCGATGCTCCGGGAGGCGTACGCGCACCCGGCGGTGGACGGCGTCGTGCTCTGGGGGTTCTGGGAGCTCTCCATGAGCCGCGACGACGCCCACCTCGTCGACGCCGAGGGGGAGGTGAACGAGGCCGGCCGCCGCCTGCTGCAGCTCAAGCGGGAGTGGCTCACCCGCGCGCACGGCCGCGCCGACGGCAACGGCGAGTTCAGGTTCCGGGGCCACCACGGCGCGTACCACGTCGACGTCGTCACGCCCGCCGGCGCCAAGATCTCCCAGGAGTTCACCGTCGACAAGGATGACGCGCCGCTCGTGCTCAACATCACCGTGTGATAATAAGAAGAAAAATGAAGTTTATTATTCTACATAATTAATTAATTAAGCCCAGAACGCCGTGCTACTAGAACAATTAACTAAATAATGGGCTAGTCAAATTCATTTTTTTTATCATTAACTTGATCATGATATATACGCTCACAAAAATATGGGATATATATCATAATTGTCGCGAAGAATATGCAACTATATATGCAAGCGTGAATATCTACATATACATATAAAA
CDS Sequence
- >LOC_Os03g47010.1
ATGGCGATCGGCGGCGACGCGGGGCAGGTGGTTGGCGATGGCGGCGCCGGTGCCGGCGACGACAACATCATCCTGAACCCGGAGTTCGACAGCGGGCTGGACAACTGGTCCGGGAGCGGGTGCAAGATCGAGCTGCACGACTCGCTCGACGACGGCAAGGTGCTCGCCGTCAGCGGCAAGTACTTCGTGGCGGCGACGGGGAGGACGGACACGTGGAACGGCGTGCAGCAGGACGTCACGTCGCGGCTGCAGCGGAAGCTGCTGTACGAGGTCGCCGCCACGGTGCGCCTCTCCGGCGCCGCCGCGACGCCGTCGCCGTGCGAGGTCCGGGCCACCGTCGCCGTGCAGAACACCGACGGCCGGCAGCAATACATCAGCGTCGCCAAGTCGCCGGCGGTGTCGGACAAGGAGTGGGTGCAGCTGCAGGGGAAGTTCCTGCTGAACGGCACGGTGGCCAAGGCGGCGATCTACATCGAGGGCCCACCTGCCGGCGTCGACCTGCTGCTCGACAGCCTTGTGGTCAAGCACGCCCAGAAGGCCACGCCGGCGCCGGCGCCGGACTTCAAGAACCTGGAATATGGCGCGAACATCCTGCAGAACAGCGACCTGGACGACGGCGTGAACGGGTGGTTCGGGCTCGGCTCGTGCGCGCTCTCCGTCCACGGCGGTGCGCCGCGCGTGCTCCCGCCCATGGCGCGGCAGTCGCTGTCGCCGCTCGACGGCGACGACGGCGACGGCGACGAGCCGCTCAACGGGAAGCACATCCACGTCACGAACCGGGCGCAGACGTGGATGGGCCCCGCGCAGGTCATCACCGACAGGGTGACGCCGTACGCGACGTACCAGGTGTCGGCGTGGGTGCGCGTCGGCGGGCAGCAGGCGGCCGGCAAGCCGCAGAACATCAACGTCGCCGTCGCCGTCGACAGCCAGTGGCTCAACGGCGGGCAGGTCATGGCGCTGGACGAGCGGTGGTACGAGATCGGCGGGTCGTTCCGCGTCGAGTCGTCGTCCACGCCGCCGTCGCGCGTGATGCTCTACGTCCAGGGCCCCGACCCCGGCGTCGACCTCATGGTCGCCGGCCTCCGCGTGTTCCCCGTCGACCGCAAGGCCCGCGCCAAGCACCTCCGCAAGCTCACCGACAAGGTGCGCAAGCGCGACGTGGTGGTGAAGGTGACGGCGGCGGCGGGCGGCGCCGCCGCCGCCGACGGCGTGGAGGTGCGGGTGCGGCAGGTGTCGAACAGCTTCCCGCTGGGCGCGTGCATCATGCGGACCAACATGGACAACGAGGACTACGTGGACTTCTTCACCAAGCACTTCAACTGGGCGGTGTTCGGGAACGAGCTCAAGTGGTACTGGACGGAGCCGGAGAAGGGGCAGCTCAACTACGCCGACGCCGACGACCTCCTCAAGCTCTGCGCCGACCACGGCATGTGCGTGCGCGGCCACTGCATCTTCTGGGAGGTGGACAGCGCGGTGCAGCAGTGGGTGAAGGCGCTGCCCGCCGACGAGCTCTCCGCCGCCGTGGCCAGCCGCATCAACGGCCTCCTCACCCGGTACAAGGGCAAGTTCCGGCACTACGACGTCAACAACGAGATGCTGCACGGGTCCTTCTACCAGGACAAGCTCGGCGCCGGCGCGCGCGCCGCCATGTTCCGGGCGGCGAGCGAGCTGGACCCGGATGCGCTGCTGTTCGTCAACGACTACAACGTCGAGGGCGCGTGCGTCGACGTCCGCGCGACGCCCGAGGCGTACATCGCGCAGGTGACCGGGCTGCAGGAGCAGGGCGCGGCGGTGGGCGGCGTCGGGCTGCAGGGCCACGTGACCGCGCCCGTCGGCGCCGTCGTGCGCGCGGCGCTCGACCGGCTCGCCGTGCTGGGCCTGCCGCTGTGGTTCACGGAGCTGGACGTGTCGTCGGCGAACGAGCACGTCCGCGCCGACGACCTGGAGGCGATGCTCCGGGAGGCGTACGCGCACCCGGCGGTGGACGGCGTCGTGCTCTGGGGGTTCTGGGAGCTCTCCATGAGCCGCGACGACGCCCACCTCGTCGACGCCGAGGGGGAGGTGAACGAGGCCGGCCGCCGCCTGCTGCAGCTCAAGCGGGAGTGGCTCACCCGCGCGCACGGCCGCGCCGACGGCAACGGCGAGTTCAGGTTCCGGGGCCACCACGGCGCGTACCACGTCGACGTCGTCACGCCCGCCGGCGCCAAGATCTCCCAGGAGTTCACCGTCGACAAGGATGACGCGCCGCTCGTGCTCAACATCACCGTGTGA
Protein Sequence
- >LOC_Os03g47010.1
MAIGGDAGQVVGDGGAGAGDDNIILNPEFDSGLDNWSGSGCKIELHDSLDDGKVLAVSGKYFVAATGRTDTWNGVQQDVTSRLQRKLLYEVAATVRLSGAAATPSPCEVRATVAVQNTDGRQQYISVAKSPAVSDKEWVQLQGKFLLNGTVAKAAIYIEGPPAGVDLLLDSLVVKHAQKATPAPAPDFKNLEYGANILQNSDLDDGVNGWFGLGSCALSVHGGAPRVLPPMARQSLSPLDGDDGDGDEPLNGKHIHVTNRAQTWMGPAQVITDRVTPYATYQVSAWVRVGGQQAAGKPQNINVAVAVDSQWLNGGQVMALDERWYEIGGSFRVESSSTPPSRVMLYVQGPDPGVDLMVAGLRVFPVDRKARAKHLRKLTDKVRKRDVVVKVTAAAGGAAAADGVEVRVRQVSNSFPLGACIMRTNMDNEDYVDFFTKHFNWAVFGNELKWYWTEPEKGQLNYADADDLLKLCADHGMCVRGHCIFWEVDSAVQQWVKALPADELSAAVASRINGLLTRYKGKFRHYDVNNEMLHGSFYQDKLGAGARAAMFRAASELDPDALLFVNDYNVEGACVDVRATPEAYIAQVTGLQEQGAAVGGVGLQGHVTAPVGAVVRAALDRLAVLGLPLWFTELDVSSANEHVRADDLEAMLREAYAHPAVDGVVLWGFWELSMSRDDAHLVDAEGEVNEAGRRLLQLKREWLTRAHGRADGNGEFRFRGHHGAYHVDVVTPAGAKISQEFTVDKDDAPLVLNITV*