Gene Details:

Functional Descriptions:

  • RT-PCR and analysis of promoter::GUS transgenic plants showed that OsGNOM1 is expressed in AR primordia, vascular tissues, LRs, root tips, leaves, anthers and lemma veins, with a distribution pattern similar to that of auxin.
  • ) mutant crown rootless4 (CRL4) that was found to have defective crown root formation.
  • Besides reduced crown root number, the CRL4 mutant showed auxin-related abnormal phenotypical character-istics such as reduced lateral root number and impaired root gravitropism.
  • These results indicate that maintaining an appropriate auxin accumulation and gradient through CRL4 in the basal portion of shoots is essential for crown root formation in rice.
  • CRL4 regulates crown root formation through auxin transport in rice.
  • CRL4 encodes a protein highly homologous with Arabidopsis GNOM, which mediates auxin-dependent plant growth by coordinating the polar localization of auxin efflux carrier PIN1.
  • In the CRL4 mutant, auxin transport was impaired in shoots and roots.
  • Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os03g46330.1
    ATGAACCTCACTTCACTATGCTGTGCTGGCCTGCTCAAATGAATATTGGTATGACACGTTTGGTAGGTTTTAGAAATAGTGGAAGTTTTTTTTTTCCTTTTTCCCTTTCCCCTGCATTTTGTAAAATAGAATGCGCAAACATGCTGAATCCGATAACACTATCTGGCTACCTGCATGTGTGACTGCTTTATTATTTTCTTTTCGAACTCGGAAAACAACCATGTTTTGTTTTCACTGCACCAATATCTTCTGTTCAATCCATCCTCAAAATTCTCCTTTAAAGTAGGCCGTATTCAGTTGGTTTTATAATCATTTATTCAAAAAGTGGGTCTATCGATGTTTCCCTGTTCCTTCCAAACCCAGTTTCCAGTTTGTTCTCCCTCAGGAACCAGTTTTAAAACTGGATTGTTGAGGCTGGTGATGTTTTGAAATCAGGACCATGTACTTGATGGTTACTTTGATAAATGTCAGTGACTTCTTTTCCAATATTCAGTTTCAATACCTCGAAACTGTCGTGCAAGTGTGGTATGTTTTTATGCGATGCACTATGTTGTTGCTGAGGTCTGCAATGTGCATGTTTATCCCAAGATTTTAGTCACTATTCTGCTATGCCTGTTTCTAACCAACTGATATGCTTCTCAACTCTTCATTTGCAAATTTGACAGAGAATTTGTAGTTTGTAAGCTCAAAACAGTAGTTCCTCACTTGGGAACCACTTACTCAGAAACAGTAACAATAAATAATGTTTGAACAGTCCAAGTTCCCAACAAATTACCATATTTTTTATTGCGTTTAGCATGGAACTGATTGGAATCAGGAGATCTTGAAACGAATTGGAGGTCATAGGGATAAACCTAGCTCCACGAAGAGAATTAGAGATATCCACTACCTCACTGGAAGTATAAAATAGTAGTTTTTCTCATCTCACCATAGATTTCCTACCCTTATCTGAAGGGACACACTTGATGTGCACAAACAGAACTTGTGCATGATGAAATGTTAAAGTTTCTGACAAATACCAAATTATGTTGTTTCAACTTTATTTAAGTTTGACACAAGACCTGGTATCCATTATTTTATTCCATAATCTGGTTGGGATAATTGCTTTCTGCTGTTTTCTTTTTACTTTTTTTTAATCCCTAGTCCCAATGGTGTTTTAATTTATGAATGCAGACATGGTGATCTAACACCATAATCATAAGGGCCTTGTTATCACCAGCACTTCTACAACCTCAATGACACAGCCATGCTCAGCCTAAATGGTTTTGCTTGGACACTTCTGGTTACCTTGCATCTTTTAGCTCACCCGCTGTATCTTGCATGCTGTGTTGCCAAGTCTTTTTGTTGAGCAAAACAAAGTCGTAAAGGTGGCCTTTTTTAGTGCCTGTCAACTGTTTTAGTGAAAGGCCGTCTAGAAGGTTGTCAACATTAAAGATATGTAGTGATTAAGAGTACACAGAAAAACCTTCAGCCCAATCATGTGTTTGGATTTATGGTAAGGTGAAAAATTTGGCTACTTTTGTACTACTATTAATGAATCCATCTCAAGTTATGTCCAGGTAAAATAAAATTTTAGTGCTGAAAGGGTCCATAAAAGTCTTACAAAACACATTTGTATTAATTTCCCTATCATGTTTACAACATGGCGCAGGTTTACCTAGTGCTTTTTGTATGCTACTTGTGCAGATGGGTGGCATGGATAAAAACCATCCTTTTGGGATTGGACAAATGGAAAATGGCAATGGGAGCTATGCATCTGAGGCAGTTACATCTGATGAGAATTCTGCAGATGGCAGTGGCATTGTTGTGGAGCCTTACGGGATCCCATGCATGGTGGAGATTTTTCATTTCCTCTGCTCCCTCCTCAATGTTGTCGAGCAAATTGGAGTTGATGAAGATCTGCCATTGTTTGCTCTGAAGTTGATCAATTCAGCAATTGAGCTTGGTGGATCTTCAATTCGTAAGCACCCAAAATTGCTGTCATTAGTTCAAGATGAGCTTTTCCGAAACCTAATGCAGTTTGGGTTGTCCATGAGCCCACTTATCCTTTCAATGGTGTGCAGCATTGTGCTAAATCTTTATCATCATCTCCGGACTGAGCTCAAATTGCAGCTTGAGGCATTCTTTTCTTGTATAATCCTAAGGCTTGCACAACCCCGATTCGGAGCAACATATCATCAGCAGGAGGTTGCAATGGAAGCTCTTGTTGATTTTTGTCGACAAAAGAATTTCATGGTGGAGATGTATGCCAATCTGGACTGTGACATAACCTGCAGGAATATTTTTGAGGAACTTGCAAATCTTCTGTCAAAGAGTGCATTTCCTATTAACTGCCCATTGTCTTCCATGCACATTCTTGCTCTGGAAGGTCTGATCTCTGTGATCCAAGGGATGGCTGATCGGATTGGGAATGCTACTTCACGCCCTGAGCTCCTGCCTGTGGAGCTTGATGAATACACTCCCTTCTGGACTGTTAAGTGTGAGAATTTTTCAGATCCTCAGCATTGGGTGAAGTTTGTCCGTCAAAGAAAGTATGTCAAAAGAAGACTAATGATTGGTGCTGATCACTTCAACAGAGACCCAAAGAAGGGTCTGGAATTTCTTCAAGGCACTCATTTGTTGCCTGAGAAGCTTGATCCCCAAAGTGTGGCTTGTTTTTTCCGCTATACAGCTGGTTTGGACAAGAATCTTGTAGGAGACTTTCTAGGCAATCATGATGAGTTTTGTGTTCAGGTGCTTCATGAGTTTGCTCAAACCTTTGACTTCCAGGAGATGAACCTTGATACAGCTCTGAGACTATTTTTGGAGACATTTCGTCTGCCTGGAGAATCTCAGAAGATACAGAGGGTTCTTGAGGCTTTCTCAGACAGATACTATGAGCAGTCCCCACAGGCTTTCGCAAACAAGGACACTGCTTTAGTGCTTGCTTACTCAATTATAATGCTGAACACTGATCAGCATAACATGCAAGTAAAGAAGAAAATGACTGAGGAGGACTTCATCAAGAACAACAGGAACATAAATGGGGGTAGTGACCTTCCGCGTGAGATGCTGTCTGAACTATACCACTCCATATGCCGAAATGAGATTAAGACCACACCAGAGCAGGGTATGGGATATTTTGAAATGTCTCCCAGCCGCTGGATAGATTTAATGCGGAAGTCGAAGTCAACATCTCTGTATATAGTTGGTGATTCTCAGCCCTTTCTGGATCATGATATGTTTGCTATCATGTCTGGTCCTACTATTGCTGCCATTGCAGTGGTGTTTGATCATTCGGAACATGAAGAAGTTCTGTTGGCCTGTGTGGATGGCTTCTTGGGTGTCGCAAAAATCTCAGCATTTCATCATCTTGAAGATGTTTTGGATGATCTTGTCGTTTCTCTCTGCAAATTCACCACTCTTTTAAACACCTCTTTGGTTGAGGAACCAGTTACTGCCTTTGGGGATGACCTGAAGGCTAGATTGGCAACTGAGACATTGTTTACCATAGCTAATAGATATGGGGACTACATACGTACTGGCTGGAGGAATGTTTTGGATTGCATATTGAGGCTGCATAAGTTAGGCCTTCTTCCTGCCCGTGTTGCTAGTGATGCAGCTGATGATTCAGAAGTTTCTGCTGAAACTGTCCAAGGAAAGCCTACTCATAGCTCAATTTCCACATCTCATATTCCAGTTATGGGTACGCCTCGGAAATCCTCTGGACTTATGGGGAGATTTAGTCAGCTGCTGTCACTTGACAGCGAAGAACCAAGGTCACAGCCCACTGAGCAGCAACTTGCTGCCCATCAGAGAACTCTACAGACGATTCAGAAATGCCGAATAGATAGTATATTTACAGAGAGCAAATTCTTGCAACCTGATTCACTATTACAACTTGCTAGGGCACTGATTTGGGCTGCAGGACGACCTCAAAAGGTTGCCAGCTCACCAGATGATGAGGACACAGCTGTATTCTGTCTGGAACTGCTAATCGCAATTACGCTTAACAACCGAGACCGAATTGTGCTTCTCTGGCAAGGAGTTTATGAGCATATTGCCAACATAGTTCAGTCAACAGTTATGCCATGTGCTCTTGTGGAGAAAGCTATTTTTGGACTTCTGCGCATATGCCAGAGGTTATTACCATATAAAGAGAACCTTGCGGATGAGCTGCTGAGGTCATTGCAATTAGTTCTCAAGCTGGATGCGCGTGTAGCAGATGCATACTGTGAAAACATCACTCAGGAGGTTGCACGCCTTGTCAAAGCAAATGCTGGACACGTAAAATCACAAATGGGCTGGAGAACTGTAGTGTTACTGCTCTCCATTACAGCTCGACACCCTGATGCTTCAGAAGTAGGCTTTGAGGCTATCATGTATATCATGTCCGAGGGTGCTCACCTTTCACTATCAAATTATGCTTTCTGTATCGAAGCGTCACGGCAGTTTGCTGAATCCAGGGTTGGTCTAATTGACAGATCCATTCGTGCCCTGGATCTGATGGCTGATTCAGCCAATAGTCTTGCCCGATGGTCACAAGAGACAAAAGGGACAGGCGAGGAAACTGACAAAGTGTTGGAAGCAATCAGGGAGATGTGGCTCAAATTGCTGCAAGCACTGAAAAAGTTGAGTTTGGATCAGAGAGAGGAGGTGAGAAATCACGCGCTAACTTCGCTTCAGCGATGCCTAACAGCAACAGAAGGGGTGTGCCTTCAGAGCTCCACATGGTCACATGCTTTCGATCTCGTCATATTCGCGCTGCTGGATGACTTACTAGAGATCAGCCAGAATCACTCGCAGAAGGACTACAGGAACATGGAAGGATCCCTTGTGCTCGCCATGAAACTAGTCGCGAAGGTCTATCTGCAACTACTGCCAGATCTTTTTGGGCTAAGCAGCTTCTGCAAGTTGTGGCTAGGAGTCCTCAGCCGGATGGAGAAGTACATCAAGATCAAGGTCCGTGGCAAGCGCAGCGACAAGCTGCAAGAGCTGATCCCTGAGCTGCTCAAGAACATTCTAATTGCGATGAAGAACAGGGGGATCCTCGCAAAGAGGAGCACCATTGGGGGCGACAGCTTGTGGGAGTTGACATGGCTTCATGCGAATAACATCTCGACGAGTTTGCAGTCTGATGTTTTCCCAAGCCAGGAGTATGAGCAGCACAGCAGTGCCGGTAGCCCGAGAGGACCCAACGGCGTTGAGTCCCGGGACTAGAAAGTTCAGAAGTTCAGGTGGTGATGGCTGGTTGATGGTTCGGCGTGCCGTGGAGTGTGCAAGTTTAGTTATTATGTTACTAGGTTTACCAATTGCTTGCTTTCTTATCCACTGAAACGTAAGGTTTTGATATTGTAATTGCAATGCGTGCCCCCATTGTAAGTTGATCTTGTAAGTTTTGTAGTAGTATTCTGGCGAGCTCGCGGACCAGTTTTTACAGTCCTTGTTTGGAGTTGCTGATGTTCCGTGTAAAGGGAAACCGTGACAGCAATGTGACCAAGTTGACAAGATCTCACATTCACACTGCTAATCTGCCGTTTTAACAGTTACTACTACTTTAATGCATTGAAGTCAGAATGTAACAAAAGAGAGCTTGAACCGAACAATTTACACACACAAGCCACCGCTATCTTTTATTTGAGTCGTATAGTTTTAATACAATGAACATACAACCAGGCACCGGTGCGAACTCCTGCCACAGCAATTCTCGAAAGGATTCAAATCCCAGTCGGTTATCCTCAATAATCACAACAATCCCAGAATGTATTTGGCTCCAGGCCTTCAGGGGTGGGTTGCGCCTCCCTGGATATGATCGCTCACTGGTGGGGGGTTGACCACAGGGATATCCAAGCTGCCGCCTTCTGATTCTGGGGAGACCTCCCGCACATCGGCGATCAATGCTTCCGACTGCTGGAAACTACCCCACTCCGCATCACCGATAGGACGGATGTCGACCCCATCCACGGCCAGTTGGACTTCAGTGTTATCATTGGAAACTAGGACAGATCTTGAGTCACTCACACAAGCTTTGTCGACATCGTCATCTGATGCATCGACGTGCTTTGTCAAGGGAGGGGAGTTATCGGTGCCGGAGCATGATTCAGATCTCTCTTCGCATACCTGCTTCGTGCTGCTTTGCTCTCT
CDS Sequence
  • >LOC_Os03g46330.1
    ATGCTACTTGTGCAGATGGGTGGCATGGATAAAAACCATCCTTTTGGGATTGGACAAATGGAAAATGGCAATGGGAGCTATGCATCTGAGGCAGTTACATCTGATGAGAATTCTGCAGATGGCAGTGGCATTGTTGTGGAGCCTTACGGGATCCCATGCATGGTGGAGATTTTTCATTTCCTCTGCTCCCTCCTCAATGTTGTCGAGCAAATTGGAGTTGATGAAGATCTGCCATTGTTTGCTCTGAAGTTGATCAATTCAGCAATTGAGCTTGGTGGATCTTCAATTCGTAAGCACCCAAAATTGCTGTCATTAGTTCAAGATGAGCTTTTCCGAAACCTAATGCAGTTTGGGTTGTCCATGAGCCCACTTATCCTTTCAATGGTGTGCAGCATTGTGCTAAATCTTTATCATCATCTCCGGACTGAGCTCAAATTGCAGCTTGAGGCATTCTTTTCTTGTATAATCCTAAGGCTTGCACAACCCCGATTCGGAGCAACATATCATCAGCAGGAGGTTGCAATGGAAGCTCTTGTTGATTTTTGTCGACAAAAGAATTTCATGGTGGAGATGTATGCCAATCTGGACTGTGACATAACCTGCAGGAATATTTTTGAGGAACTTGCAAATCTTCTGTCAAAGAGTGCATTTCCTATTAACTGCCCATTGTCTTCCATGCACATTCTTGCTCTGGAAGGTCTGATCTCTGTGATCCAAGGGATGGCTGATCGGATTGGGAATGCTACTTCACGCCCTGAGCTCCTGCCTGTGGAGCTTGATGAATACACTCCCTTCTGGACTGTTAAGTGTGAGAATTTTTCAGATCCTCAGCATTGGGTGAAGTTTGTCCGTCAAAGAAAGTATGTCAAAAGAAGACTAATGATTGGTGCTGATCACTTCAACAGAGACCCAAAGAAGGGTCTGGAATTTCTTCAAGGCACTCATTTGTTGCCTGAGAAGCTTGATCCCCAAAGTGTGGCTTGTTTTTTCCGCTATACAGCTGGTTTGGACAAGAATCTTGTAGGAGACTTTCTAGGCAATCATGATGAGTTTTGTGTTCAGGTGCTTCATGAGTTTGCTCAAACCTTTGACTTCCAGGAGATGAACCTTGATACAGCTCTGAGACTATTTTTGGAGACATTTCGTCTGCCTGGAGAATCTCAGAAGATACAGAGGGTTCTTGAGGCTTTCTCAGACAGATACTATGAGCAGTCCCCACAGGCTTTCGCAAACAAGGACACTGCTTTAGTGCTTGCTTACTCAATTATAATGCTGAACACTGATCAGCATAACATGCAAGTAAAGAAGAAAATGACTGAGGAGGACTTCATCAAGAACAACAGGAACATAAATGGGGGTAGTGACCTTCCGCGTGAGATGCTGTCTGAACTATACCACTCCATATGCCGAAATGAGATTAAGACCACACCAGAGCAGGGTATGGGATATTTTGAAATGTCTCCCAGCCGCTGGATAGATTTAATGCGGAAGTCGAAGTCAACATCTCTGTATATAGTTGGTGATTCTCAGCCCTTTCTGGATCATGATATGTTTGCTATCATGTCTGGTCCTACTATTGCTGCCATTGCAGTGGTGTTTGATCATTCGGAACATGAAGAAGTTCTGTTGGCCTGTGTGGATGGCTTCTTGGGTGTCGCAAAAATCTCAGCATTTCATCATCTTGAAGATGTTTTGGATGATCTTGTCGTTTCTCTCTGCAAATTCACCACTCTTTTAAACACCTCTTTGGTTGAGGAACCAGTTACTGCCTTTGGGGATGACCTGAAGGCTAGATTGGCAACTGAGACATTGTTTACCATAGCTAATAGATATGGGGACTACATACGTACTGGCTGGAGGAATGTTTTGGATTGCATATTGAGGCTGCATAAGTTAGGCCTTCTTCCTGCCCGTGTTGCTAGTGATGCAGCTGATGATTCAGAAGTTTCTGCTGAAACTGTCCAAGGAAAGCCTACTCATAGCTCAATTTCCACATCTCATATTCCAGTTATGGGTACGCCTCGGAAATCCTCTGGACTTATGGGGAGATTTAGTCAGCTGCTGTCACTTGACAGCGAAGAACCAAGGTCACAGCCCACTGAGCAGCAACTTGCTGCCCATCAGAGAACTCTACAGACGATTCAGAAATGCCGAATAGATAGTATATTTACAGAGAGCAAATTCTTGCAACCTGATTCACTATTACAACTTGCTAGGGCACTGATTTGGGCTGCAGGACGACCTCAAAAGGTTGCCAGCTCACCAGATGATGAGGACACAGCTGTATTCTGTCTGGAACTGCTAATCGCAATTACGCTTAACAACCGAGACCGAATTGTGCTTCTCTGGCAAGGAGTTTATGAGCATATTGCCAACATAGTTCAGTCAACAGTTATGCCATGTGCTCTTGTGGAGAAAGCTATTTTTGGACTTCTGCGCATATGCCAGAGGTTATTACCATATAAAGAGAACCTTGCGGATGAGCTGCTGAGGTCATTGCAATTAGTTCTCAAGCTGGATGCGCGTGTAGCAGATGCATACTGTGAAAACATCACTCAGGAGGTTGCACGCCTTGTCAAAGCAAATGCTGGACACGTAAAATCACAAATGGGCTGGAGAACTGTAGTGTTACTGCTCTCCATTACAGCTCGACACCCTGATGCTTCAGAAGTAGGCTTTGAGGCTATCATGTATATCATGTCCGAGGGTGCTCACCTTTCACTATCAAATTATGCTTTCTGTATCGAAGCGTCACGGCAGTTTGCTGAATCCAGGGTTGGTCTAATTGACAGATCCATTCGTGCCCTGGATCTGATGGCTGATTCAGCCAATAGTCTTGCCCGATGGTCACAAGAGACAAAAGGGACAGGCGAGGAAACTGACAAAGTGTTGGAAGCAATCAGGGAGATGTGGCTCAAATTGCTGCAAGCACTGAAAAAGTTGAGTTTGGATCAGAGAGAGGAGGTGAGAAATCACGCGCTAACTTCGCTTCAGCGATGCCTAACAGCAACAGAAGGGGTGTGCCTTCAGAGCTCCACATGGTCACATGCTTTCGATCTCGTCATATTCGCGCTGCTGGATGACTTACTAGAGATCAGCCAGAATCACTCGCAGAAGGACTACAGGAACATGGAAGGATCCCTTGTGCTCGCCATGAAACTAGTCGCGAAGGTCTATCTGCAACTACTGCCAGATCTTTTTGGGCTAAGCAGCTTCTGCAAGTTGTGGCTAGGAGTCCTCAGCCGGATGGAGAAGTACATCAAGATCAAGGTCCGTGGCAAGCGCAGCGACAAGCTGCAAGAGCTGATCCCTGAGCTGCTCAAGAACATTCTAATTGCGATGAAGAACAGGGGGATCCTCGCAAAGAGGAGCACCATTGGGGGCGACAGCTTGTGGGAGTTGACATGGCTTCATGCGAATAACATCTCGACGAGTTTGCAGTCTGATGTTTTCCCAAGCCAGGAGTATGAGCAGCACAGCAGTGCCGGTAGCCCGAGAGGACCCAACGGCGTTGAGTCCCGGGACTAG
Protein Sequence
  • >LOC_Os03g46330.1
    MLLVQMGGMDKNHPFGIGQMENGNGSYASEAVTSDENSADGSGIVVEPYGIPCMVEIFHFLCSLLNVVEQIGVDEDLPLFALKLINSAIELGGSSIRKHPKLLSLVQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCIILRLAQPRFGATYHQQEVAMEALVDFCRQKNFMVEMYANLDCDITCRNIFEELANLLSKSAFPINCPLSSMHILALEGLISVIQGMADRIGNATSRPELLPVELDEYTPFWTVKCENFSDPQHWVKFVRQRKYVKRRLMIGADHFNRDPKKGLEFLQGTHLLPEKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAQTFDFQEMNLDTALRLFLETFRLPGESQKIQRVLEAFSDRYYEQSPQAFANKDTALVLAYSIIMLNTDQHNMQVKKKMTEEDFIKNNRNINGGSDLPREMLSELYHSICRNEIKTTPEQGMGYFEMSPSRWIDLMRKSKSTSLYIVGDSQPFLDHDMFAIMSGPTIAAIAVVFDHSEHEEVLLACVDGFLGVAKISAFHHLEDVLDDLVVSLCKFTTLLNTSLVEEPVTAFGDDLKARLATETLFTIANRYGDYIRTGWRNVLDCILRLHKLGLLPARVASDAADDSEVSAETVQGKPTHSSISTSHIPVMGTPRKSSGLMGRFSQLLSLDSEEPRSQPTEQQLAAHQRTLQTIQKCRIDSIFTESKFLQPDSLLQLARALIWAAGRPQKVASSPDDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQSTVMPCALVEKAIFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCENITQEVARLVKANAGHVKSQMGWRTVVLLLSITARHPDASEVGFEAIMYIMSEGAHLSLSNYAFCIEASRQFAESRVGLIDRSIRALDLMADSANSLARWSQETKGTGEETDKVLEAIREMWLKLLQALKKLSLDQREEVRNHALTSLQRCLTATEGVCLQSSTWSHAFDLVIFALLDDLLEISQNHSQKDYRNMEGSLVLAMKLVAKVYLQLLPDLFGLSSFCKLWLGVLSRMEKYIKIKVRGKRSDKLQELIPELLKNILIAMKNRGILAKRSTIGGDSLWELTWLHANNISTSLQSDVFPSQEYEQHSSAGSPRGPNGVESRD*