Information report for OsSh1
Gene Details
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Functional Descriptions
- The function of the rice ortholog (OsSh1) was subsequently validated with a shattering-resistant mutant, and two maize orthologs (ZmSh1-1 and ZmSh1-5.
- Whole-genome mutation analysis of ‘Minamiyutaka’ newly identified a 13-bp deletion causing defective splicing in exon 3 of the OsSh1 gene which has previously been referred to as a candidate for controlling seed shattering.
- Nucleotide diversity analysis of OsSh1 in wild rice accessions and cultivars revealed that OsSh1 has been under strong selection during rice domestication, and a missense mutation might have contributed to the reduction of seed shattering from the wild progenitors to cultivated rice.
Functional Keywords
Literature and News
Gene Resources
- UniProt: B7EHY1
- EMBL: AK070479, EU846982
- AlphaFoldDB: B7EHY1
- EnsemblPlants: Os03t0650000-01, Os03t0650000-02
- Gramene: Os03t0650000-01, Os03t0650000-02
- KEGG: dosa:Os03g0650000
- Orthologous matrix: PGPQKVQ
- InterPro: IPR006780, IPR036910
- PANTHER: PTHR31675, PTHR31675:SF38
- SUPFAM: SSF47095
- Gene3D: 1.10.30.10
- OrthoDB: B7EHY1
- SWISS-MODEL: B7EHY1
- Conserved Domain Database: cd00084
Sequences
cDNA Sequence
- >LOC_Os03g44710.1
TCCCGTTTGCACCACCACCAATCTCTCTCTCTCTCTAAGATCTCTATCTATCTAAAGATCTGAGCTACAATTAATTAAAACCTGATAAGAAGAAGACCCTGAGCTCAATCCCTTCTTATTATACTATATATATACTTCTGTATTTGTGCACAGTGTTGGTACAGGTATCTGCAGACAGCCATATCTATCTTTCTAGCTAATTGGCAATATGCCTGAAGTCCACTGCTCGTCCTAAGATTTACTTCTCCACCCCCCCCCCTCTCCTTTGCTTCTTCTTCTTCATCATCATCTTCTTCCTCCTCCTGTTAATTAAGTTCTTGATTTCTAAGCTAGCAATTGAGCACACATCGATCGCGAGAGACGCAGCGGCGCCCGTCTACCGCGGGGCTAGAGGAATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGATCGAGTACACATGATGATCGATGGATCCTACGTGCTTGTTGATCTCATGTTGTAAGTAACTTAATTAAGAAAAAAAGTCTACGCTTATTTATTTCTTAAGTATCATCAGTTAAATTTGTGAGCGAGTATATAGATGAGTTGTCATGATCAGTGAGTGATCGTATGCATGCAGTGCTGAGAATTAAAGGTGTATATGCATGAGTAACGTTACATGCAGCTAGTGTCGACGCACGTATGACAGACTGAATAAACTCTTCACCATGTTGTTTTTTTATGTTTGAAATGAATTAATTAATTGTCCATGATTGCAATCC - >LOC_Os03g44710.3
TCCCGTTTGCACCACCACCAATCTCTCTCTCTCTCTAAGATCTCTATCTATCTAAAGATCTGAGCTACAATTAATTAAAACCTGATAAGAAGAAGACCCTGAGCTCAATCCCTTCTTATTATACTATATATATACTTCTGTATTTGTGCACAGTGTTGGTACAGGTATCTGCAGACAGCCATATCTATCTTTCTAGCTAATTGGCAATATGCCTGAAGTCCACTGCTCGTCCTAAGATTTACTTCTCCACCCCCCCCCCTCTCCTTTGCTTCTTCTTCTTCATCATCATCTTCTTCCTCCTCCTGTTAATTAAGTTCTTGATTTCTAAGCTAGCAATTGAGCACACATCGATCGCGAGAGACGCAGCGGCGCCCGTCTACCGCGGGGCTAGAGGAATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGATCGAGTACACATGATGATCGATGGATCCTACGTGCTTGTTGATCTCATGTTGTAAGTAACTTAATTAAGAAAAAAAGTCTACGCTTATTTATTTCTTAAGTATCATCAGTTAAATTTGTGAGCGAGTATATAGATGAGTTGTCATGATCAGTGAGTGATCGTATGCATGCAGTGCTGAGAATTAAAGGTGTATATGCATGAGTAACGTTACATGCAGCTAGTGTCGACGCACGTATGACAGACTGAATAAACTCTTCACCATGTTGTTTTTTTATGTTTGAAATGAATTAATTAATTGTCCATGATTGCAATCC - >LOC_Os03g44710.2
TCCCGTTTGCACCACCACCAATCTCTCTCTCTCTCTAAGATCTCTATCTATCTAAAGATCTGAGCTACAATTAATTAAAACCTGATAAGAAGAAGACCCTGAGCTCAATCCCTTCTTATTATACTATATATATACTTCTGTATTTGTGCACAGTGTTGGTACAGGTATCTGCAGACAGCCATATCTATCTTTCTAGCTAATTGGCAATATGCCTGAAGTCCACTGCTCGTCCTAAGATTTACTTCTCCACCCCCCCCCCTCTCCTTTGCTTCTTCTTCTTCATCATCATCTTCTTCCTCCTCCTGTTAATTAAGTTCTTGATTTCTAAGCTAGCAATTGAGCACACATCGATCGCGAGAGACGCAGCGGCGCCCGTCTACCGCGGGGCTAGAGGAATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGATCGAGTACACATGATGATCGATGGATCCTACGTGCTTGTTGATCTCATGTTGTAAGTAACTTAATTAAGAAAAAAAGTCTACGCTTATTTATTTCTTAAGTATCATCAGTTAAATTTGTGAGCGAGTATATAGATGAGTTGTCATGATCAGTGAGTGATCGTATGCATGCAGTGCTGAGAATTAAAGGTGTATATGCATGAGTAACGTTACATGCAGCTAGTGTCGACGCACGTATGACAGACTGAATAAACTCTTCACCATGTTGTTTTTTTATGTTTGAAATGAATTAATTAATTGTCCATGATTGCAATCC
CDS Sequence
- >LOC_Os03g44710.1
ATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGA - >LOC_Os03g44710.3
ATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGA - >LOC_Os03g44710.2
ATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGA
Protein Sequence
- >LOC_Os03g44710.1
MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQKVQRLY* - >LOC_Os03g44710.3
MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQKVQRLY* - >LOC_Os03g44710.2
MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQKVQRLY*