Gene Details:

Functional Descriptions:

  • The function of the rice ortholog (OsSh1) was subsequently validated with a shattering-resistant mutant, and two maize orthologs (ZmSh1-1 and ZmSh1-5.
  • Whole-genome mutation analysis of ‘Minamiyutaka’ newly identified a 13-bp deletion causing defective splicing in exon 3 of the OsSh1 gene which has previously been referred to as a candidate for controlling seed shattering.
  • Nucleotide diversity analysis of OsSh1 in wild rice accessions and cultivars revealed that OsSh1 has been under strong selection during rice domestication, and a missense mutation might have contributed to the reduction of seed shattering from the wild progenitors to cultivated rice.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >LOC_Os03g44710.1
    TCCCGTTTGCACCACCACCAATCTCTCTCTCTCTCTAAGATCTCTATCTATCTAAAGATCTGAGCTACAATTAATTAAAACCTGATAAGAAGAAGACCCTGAGCTCAATCCCTTCTTATTATACTATATATATACTTCTGTATTTGTGCACAGTGTTGGTACAGGTATCTGCAGACAGCCATATCTATCTTTCTAGCTAATTGGCAATATGCCTGAAGTCCACTGCTCGTCCTAAGATTTACTTCTCCACCCCCCCCCCTCTCCTTTGCTTCTTCTTCTTCATCATCATCTTCTTCCTCCTCCTGTTAATTAAGTTCTTGATTTCTAAGCTAGCAATTGAGCACACATCGATCGCGAGAGACGCAGCGGCGCCCGTCTACCGCGGGGCTAGAGGAATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGATCGAGTACACATGATGATCGATGGATCCTACGTGCTTGTTGATCTCATGTTGTAAGTAACTTAATTAAGAAAAAAAGTCTACGCTTATTTATTTCTTAAGTATCATCAGTTAAATTTGTGAGCGAGTATATAGATGAGTTGTCATGATCAGTGAGTGATCGTATGCATGCAGTGCTGAGAATTAAAGGTGTATATGCATGAGTAACGTTACATGCAGCTAGTGTCGACGCACGTATGACAGACTGAATAAACTCTTCACCATGTTGTTTTTTTATGTTTGAAATGAATTAATTAATTGTCCATGATTGCAATCC
  • >LOC_Os03g44710.3
    TCCCGTTTGCACCACCACCAATCTCTCTCTCTCTCTAAGATCTCTATCTATCTAAAGATCTGAGCTACAATTAATTAAAACCTGATAAGAAGAAGACCCTGAGCTCAATCCCTTCTTATTATACTATATATATACTTCTGTATTTGTGCACAGTGTTGGTACAGGTATCTGCAGACAGCCATATCTATCTTTCTAGCTAATTGGCAATATGCCTGAAGTCCACTGCTCGTCCTAAGATTTACTTCTCCACCCCCCCCCCTCTCCTTTGCTTCTTCTTCTTCATCATCATCTTCTTCCTCCTCCTGTTAATTAAGTTCTTGATTTCTAAGCTAGCAATTGAGCACACATCGATCGCGAGAGACGCAGCGGCGCCCGTCTACCGCGGGGCTAGAGGAATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGATCGAGTACACATGATGATCGATGGATCCTACGTGCTTGTTGATCTCATGTTGTAAGTAACTTAATTAAGAAAAAAAGTCTACGCTTATTTATTTCTTAAGTATCATCAGTTAAATTTGTGAGCGAGTATATAGATGAGTTGTCATGATCAGTGAGTGATCGTATGCATGCAGTGCTGAGAATTAAAGGTGTATATGCATGAGTAACGTTACATGCAGCTAGTGTCGACGCACGTATGACAGACTGAATAAACTCTTCACCATGTTGTTTTTTTATGTTTGAAATGAATTAATTAATTGTCCATGATTGCAATCC
  • >LOC_Os03g44710.2
    TCCCGTTTGCACCACCACCAATCTCTCTCTCTCTCTAAGATCTCTATCTATCTAAAGATCTGAGCTACAATTAATTAAAACCTGATAAGAAGAAGACCCTGAGCTCAATCCCTTCTTATTATACTATATATATACTTCTGTATTTGTGCACAGTGTTGGTACAGGTATCTGCAGACAGCCATATCTATCTTTCTAGCTAATTGGCAATATGCCTGAAGTCCACTGCTCGTCCTAAGATTTACTTCTCCACCCCCCCCCCTCTCCTTTGCTTCTTCTTCTTCATCATCATCTTCTTCCTCCTCCTGTTAATTAAGTTCTTGATTTCTAAGCTAGCAATTGAGCACACATCGATCGCGAGAGACGCAGCGGCGCCCGTCTACCGCGGGGCTAGAGGAATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGATCGAGTACACATGATGATCGATGGATCCTACGTGCTTGTTGATCTCATGTTGTAAGTAACTTAATTAAGAAAAAAAGTCTACGCTTATTTATTTCTTAAGTATCATCAGTTAAATTTGTGAGCGAGTATATAGATGAGTTGTCATGATCAGTGAGTGATCGTATGCATGCAGTGCTGAGAATTAAAGGTGTATATGCATGAGTAACGTTACATGCAGCTAGTGTCGACGCACGTATGACAGACTGAATAAACTCTTCACCATGTTGTTTTTTTATGTTTGAAATGAATTAATTAATTGTCCATGATTGCAATCC
CDS Sequence
  • >LOC_Os03g44710.1
    ATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGA
  • >LOC_Os03g44710.3
    ATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGA
  • >LOC_Os03g44710.2
    ATGTCGGCACAGATCGTGCCGGCGCCGGAGCATGTGTGCTACGTGCACTGCAACTTCTGCAACACAATTTTCGCGGTCAGTGTTCCAAGCAATAGCATGCTAAACATCGTGACCGTCCGTTGTGGCCATTGCACTAGCCTGTTGTCAGTGAACTTGCGAGGATTGGTCCAAGCACTCCCAGCAGAAGATCATTTACAGGACAATTTGAAGATGCACAATATGAGCTTCCGCGAAAACTACTCTGAATATGGCTCATCTTCCAGATATGGCCGAGTGCCAATGATGTTCTCAAAAAATGACACAGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGATCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTCCCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAAGGTTCAAAGGCTGTATTGA
Protein Sequence
  • >LOC_Os03g44710.1
    MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQKVQRLY*
  • >LOC_Os03g44710.3
    MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQKVQRLY*
  • >LOC_Os03g44710.2
    MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQKVQRLY*