Gene Details:
- MSU gene ID: LOC_Os03g44210
- RAPdb gene ID: Os03g0644200
- Gene Symbol: WAL3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- In this study, we identified a new PLS-type protein, WAL3 (Whole Albino Leaf on Chromosome 3), playing important roles in plant chloroplast development.
- WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.
- Knockout of WAL3 gene in Nipponbare variety caused abnormal chloroplast development and showed an albino lethal phenotype.
- In summary, our study revealed that WAL3 is essential for chloroplast development in rice.
- The decreased abundance of photosynthesis-related proteins in WAL3 mutants indicated WAL3 influence photosynthesis.
- Transcriptome sequencing showed that WAL3 involved in multiple metabolic pathways including the chlorophyll synthesis and photosynthetic related metabolic pathways.
Function-related keywords:
- leaf , chloroplast , development , photosynthesis , R-protein , chloroplast-development , chlorophyll
Literature:
- WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice . DOI: 10.1016/j.plantsci.2022.111382 ; PMID: 35850283
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g44210.2
ATCTTTTGTCCCCTCGCCCGCAATCCACCCACCTCTCGAGCTCACAAAAATCGCTCGCCCCCCTCCACCTCCACCTCGCTCCCGCCGCCTCCACCACCCATCTCCGCCCTCGTCCGCTCGCCGGCAAGCCGCTGCTGCTGCAGCTGCTTGCTCGTCTCGTCTCCCCATCCCTGGGCGGGGCGCGGTGGGAGGGGGGCGGGGGACTCGCCACCGCTCTCCGTTCCGTGGGTGTCTCTGCACTCTGCTTTGCTCCTCTTCTTCCCCCCCTCTGGTTCCACCCCCGCGCGGCGGAGCGCGGGGGAAGGGATCCACAGATGCTGTTCTGCTGCCCTGCTTCTCCTCCCCCTCCAATCCAAGCTTCTTCTCTCCCGCCGTTCCGGACGAACAGCTTGTCTCCGACCGTACGTGGCGGGAATGCCGCGCCACGACGCCCTCTCGCGCGGTCTTTCTCGGCCAAGAACCGGTCCCCGCGAGCGCGGAACCGCCACGCGGCAGCAGGTGATGGTGGTGGTTATGGGTCTCCGGAGCAAGAGGGGCGTGGGGAATCGTCCCTCCCGAACGCCGAGGCGCTCGCGTCCTCGCTGCGTGATTGCGGCGGCGCGGACGGCGTCCGGCGGGTGCACGCGGTTGCTGTCCGGTCGCTCGACAGCCTGGGGACGTTCGTCGCCAACAATTTGATCAGCGCGTATGCCAGGTTCGACGAGGTTTCGGATGCCAGGGAGGTGTTCGACGAAATGCCGGAGAGGAGTGTTGTGTCGTGGACGGCGATGATGAATGTGTATCTGAAACTAGGACACTACGGCGAGGTTGTGAGGCTCTTCTTTGATATGGTGGGAAGCGGAGTGCAAGGTAACAGCTTGACTTTTGTTTGCTTGCTGAAATCATGCGGCGAGCGTTGCGATGCTAAGCTAGGGCAGCAGGTCCACTGTTGTATTGTCAAAGGTGGGTGGAGCAATGTGATAGTGGACAGTGCTATTGCACACTTCTATGCTCAATGCGGTGATGTTGCTAGTGCTTCAGCCATATTTGATAAGATGGCCTATCGTGATGTCATCTCATGGACAACAATGATCACAGCTTATGTGCAGCATGGGCATGGGGGCCAAGCTCTTAGAATGTTTTCAGAAATGGTGTCAGAAGGATTTCGACCAAATGAGTTCACTGTGTGCAGTGTCCTCAAGGCTTGTGCAGAAGAGAAAGCTGTGAGATTTGGGAAGCAGCTGCATTGTGCTGTTTTGAAGAAAATGTACAAAAATGACATCCATATCGGCAGTGCCCTTGTCACCATGTATGCTAGATGCGGTGAAGTTTTTGATGCTCAGGCAGTGTTTGATATGATGCCACGAAGAAACACTATTACATGGACTTCTATGATCTCTGGCTATGCACAAAGTGGCCATGGAGAAAAGGCTATCTTGTTGTTCAGAAAGATGAAGATGCGCCGAGTATTTGTTAACAACCTCACCATTGTTGGTCTCCTAAGTGCCTGTGGCTCCTTACAGTCGCCTTATCTTGGAAAGGAATTGCATGCTCAGATAATAAAGAATTCTATGGAAGAAAATCTTCAAATTGGGAGTACACTTGTTTGGTTCTACTGTAAATGTGGAGAGTACACATATGCTGCAAGAATTCTTGAAGCGATGCCTGACCGTGATGCTATCTCATGGACTGCTCTGATTTCCGGCTACAATAATCTAGGTCATAATGTTGAAGCACTTAAATCATTAGATGATATGCTATGGGATGGTGTAAAACCAAATACATACACTTACTCCTCGGCTCTGAAAGCTTGTGCAAAATTGGAGGCTCTGCAATATGGAAGGAAGATCCATGGTTTTGTTAACAAGACTCAAGATTTCTCCAATGTGTTTGTGGGAAGCTCACTTATCGATATGTACATGAGGTGTGGAAAAGTCGACGAAGCCCGAAGTGTCTTTGATGCCATGCCAGAACATAACCTTGTGACATGGAAAGTGATTATTACAGGATTTGCTCAGAATGGCCTCTGTGAAGAGGCTTTGAAGTACATGTACCTAATGCAACAAGAAGGGCATGAGGTTGATGATTTTGTGCTCTCAACAGTTCTGACATCATGTGGAGATCTTCAATGGAAATCCATCTCCTTCTCTGACTCAGTTGCTGGTTCAGTTTCAGCTAGGCAGTAGATTAGTTCTCCCGTGGCAAAGAAGCTAGCACTTCTGTACAGTTACAGAGATTTGTTATTGTGCAAGATCAGAAGACATGTAGCACAAAAAGTTTATTTTCAACAGGGATTTGAAGTGCTGTCCTAAATTTAACAAACTGAAGACTCTGGTACTTAATGATTGGTGTGTGGCTTCTGACCTCAATGCACTAATTTATTTTCTGCAACACTCACCAGTTCTGGAGAAGCTTACACTACAGCTTTCCAAGACATGAAAAGATTCATTGCAAACAACTGGAAATTACAAGTATCTTAAGAAGGTTCCATTTGACCTTAAGAAGGTTGAAAGCAAATGTGATGAAGTTGATGAAAGAGTTTGTGAAGTTCTCAAGATCTTGAGTGCTTATGTAACACCGCTCCAAATTGATATGAGAGATATATGTGAGTTAAATATTTAATACCACTCCTTTCAATTTATCAAAATATCTATAAATTGTAACCATGCAGTGAGGAAAATATTTGGCTAATTAGAGGGAAGCAATTGTTCAGGACAGGTAGAAACTCTCCCCATATTTCATGAACAGAAAGTGAAAGCAATTGTCAAGCATCATCATACATAAGC - >LOC_Os03g44210.1
ATCTTTTGTCCCCTCGCCCGCAATCCACCCACCTCTCGAGCTCACAAAAATCGCTCGCCCCCCTCCACCTCCACCTCGCTCCCGCCGCCTCCACCACCCATCTCCGCCCTCGTCCGCTCGCCGGCAAGCCGCTGCTGCTGCAGCTGCTTGCTCGTCTCGTCTCCCCATCCCTGGGCGGGGCGCGGTGGGAGGGGGGCGGGGGACTCGCCACCGCTCTCCGTTCCGTGGGTGTCTCTGCACTCTGCTTTGCTCCTCTTCTTCCCCCCCTCTGGTTCCACCCCCGCGCGGCGGAGCGCGGGGGAAGGGATCCACAGATGCTGTTCTGCTGCCCTGCTTCTCCTCCCCCTCCAATCCAAGCTTCTTCTCTCCCGCCGTTCCGGACGAACAGCTTGTCTCCGACCGTACGTGGCGGGAATGCCGCGCCACGACGCCCTCTCGCGCGGTCTTTCTCGGCCAAGAACCGGTCCCCGCGAGCGCGGAACCGCCACGCGGCAGCAGGTGATGGTGGTGGTTATGGGTCTCCGGAGCAAGAGGGGCGTGGGGAATCGTCCCTCCCGAACGCCGAGGCGCTCGCGTCCTCGCTGCGTGATTGCGGCGGCGCGGACGGCGTCCGGCGGGTGCACGCGGTTGCTGTCCGGTCGCTCGACAGCCTGGGGACGTTCGTCGCCAACAATTTGATCAGCGCGTATGCCAGGTTCGACGAGGTTTCGGATGCCAGGGAGGTGTTCGACGAAATGCCGGAGAGGAGTGTTGTGTCGTGGACGGCGATGATGAATGTGTATCTGAAACTAGGACACTACGGCGAGGTTGTGAGGCTCTTCTTTGATATGGTGGGAAGCGGAGTGCAAGGTAACAGCTTGACTTTTGTTTGCTTGCTGAAATCATGCGGCGAGCGTTGCGATGCTAAGCTAGGGCAGCAGGTCCACTGTTGTATTGTCAAAGGTGGGTGGAGCAATGTGATAGTGGACAGTGCTATTGCACACTTCTATGCTCAATGCGGTGATGTTGCTAGTGCTTCAGCCATATTTGATAAGATGGCCTATCGTGATGTCATCTCATGGACAACAATGATCACAGCTTATGTGCAGCATGGGCATGGGGGCCAAGCTCTTAGAATGTTTTCAGAAATGGTGTCAGAAGGATTTCGACCAAATGAGTTCACTGTGTGCAGTGTCCTCAAGGCTTGTGCAGAAGAGAAAGCTGTGAGATTTGGGAAGCAGCTGCATTGTGCTGTTTTGAAGAAAATGTACAAAAATGACATCCATATCGGCAGTGCCCTTGTCACCATGTATGCTAGATGCGGTGAAGTTTTTGATGCTCAGGCAGTGTTTGATATGATGCCACGAAGAAACACTATTACATGGACTTCTATGATCTCTGGCTATGCACAAAGTGGCCATGGAGAAAAGGCTATCTTGTTGTTCAGAAAGATGAAGATGCGCCGAGTATTTGTTAACAACCTCACCATTGTTGGTCTCCTAAGTGCCTGTGGCTCCTTACAGTCGCCTTATCTTGGAAAGGAATTGCATGCTCAGATAATAAAGAATTCTATGGAAGAAAATCTTCAAATTGGGAGTACACTTGTTTGGTTCTACTGTAAATGTGGAGAGTACACATATGCTGCAAGAATTCTTGAAGCGATGCCTGACCGTGATGCTATCTCATGGACTGCTCTGATTTCCGGCTACAATAATCTAGGTCATAATGTTGAAGCACTTAAATCATTAGATGATATGCTATGGGATGGTGTAAAACCAAATACATACACTTACTCCTCGGCTCTGAAAGCTTGTGCAAAATTGGAGGCTCTGCAATATGGAAGGAAGATCCATGGTTTTGTTAACAAGACTCAAGATTTCTCCAATGTGTTTGTGGGAAGCTCACTTATCGATATGTACATGAGGTGTGGAAAAGTCGACGAAGCCCGAAGTGTCTTTGATGCCATGCCAGAACATAACCTTGTGACATGGAAAGTGATTATTACAGGATTTGCTCAGAATGGCCTCTGTGAAGAGGCTTTGAAGTACATGTACCTAATGCAACAAGAAGGGCATGAGGTTGATGATTTTGTGCTCTCAACAGTTCTGACATCATGTGGAGATCTTCAATGGAAATCCATCTCCTTCTCTGACTCAGTTGCTGGTTCAGTTTCAGCTAGGCAGTAGATTAGTTCTCCCGTGGCAAAGAAGCTAGCACTTCTGTACAGTTACAGAGATTTGTTATTGTGCAAGATCAGAAGACATGTAGCACAAAAAGTTTATTTTCAACAGGGATTTGAAGTGCTGTCCTAAATTTAACAAACTGAAGACTCTGGTACTTAATGATTGGTGTGTGGCTTCTGACCTCAATGCACTAATTTATTTTCTGCAACACTCACCAGTTCTGGAGAAGCTTACACTACAGCTTTCCAAGACATGAAAAGATTCATTGCAAACAACTGGAAATTACAAGTATCTTAAGAAGGTTCCATTTGACCTTAAGAAGGTTGAAAGCAAATGTGATGAAGTTGATGAAAGAGTTTGTGAAGTTCTCAAGATCTTGAGTGCTTATGTAACACCGCTCCAAATTGATATGAGAGATATATGTGAGTTAAATATTTAATACCACTCCTTTCAATTTATCAAAATATCTATAAATTGTAACCATGCAGTGAGGAAAATATTTGGCTAATTAGAGGGAAGCAATTGTTCAGGACAGGTAGAAACTCTCCCCATATTTCATGAACAGAAAGTGAAAGCAATTGTCAAGCATCATCATACATAAGC
CDS Sequence
- >LOC_Os03g44210.2
ATGCTGTTCTGCTGCCCTGCTTCTCCTCCCCCTCCAATCCAAGCTTCTTCTCTCCCGCCGTTCCGGACGAACAGCTTGTCTCCGACCGTACGTGGCGGGAATGCCGCGCCACGACGCCCTCTCGCGCGGTCTTTCTCGGCCAAGAACCGGTCCCCGCGAGCGCGGAACCGCCACGCGGCAGCAGGTGATGGTGGTGGTTATGGGTCTCCGGAGCAAGAGGGGCGTGGGGAATCGTCCCTCCCGAACGCCGAGGCGCTCGCGTCCTCGCTGCGTGATTGCGGCGGCGCGGACGGCGTCCGGCGGGTGCACGCGGTTGCTGTCCGGTCGCTCGACAGCCTGGGGACGTTCGTCGCCAACAATTTGATCAGCGCGTATGCCAGGTTCGACGAGGTTTCGGATGCCAGGGAGGTGTTCGACGAAATGCCGGAGAGGAGTGTTGTGTCGTGGACGGCGATGATGAATGTGTATCTGAAACTAGGACACTACGGCGAGGTTGTGAGGCTCTTCTTTGATATGGTGGGAAGCGGAGTGCAAGGTAACAGCTTGACTTTTGTTTGCTTGCTGAAATCATGCGGCGAGCGTTGCGATGCTAAGCTAGGGCAGCAGGTCCACTGTTGTATTGTCAAAGGTGGGTGGAGCAATGTGATAGTGGACAGTGCTATTGCACACTTCTATGCTCAATGCGGTGATGTTGCTAGTGCTTCAGCCATATTTGATAAGATGGCCTATCGTGATGTCATCTCATGGACAACAATGATCACAGCTTATGTGCAGCATGGGCATGGGGGCCAAGCTCTTAGAATGTTTTCAGAAATGGTGTCAGAAGGATTTCGACCAAATGAGTTCACTGTGTGCAGTGTCCTCAAGGCTTGTGCAGAAGAGAAAGCTGTGAGATTTGGGAAGCAGCTGCATTGTGCTGTTTTGAAGAAAATGTACAAAAATGACATCCATATCGGCAGTGCCCTTGTCACCATGTATGCTAGATGCGGTGAAGTTTTTGATGCTCAGGCAGTGTTTGATATGATGCCACGAAGAAACACTATTACATGGACTTCTATGATCTCTGGCTATGCACAAAGTGGCCATGGAGAAAAGGCTATCTTGTTGTTCAGAAAGATGAAGATGCGCCGAGTATTTGTTAACAACCTCACCATTGTTGGTCTCCTAAGTGCCTGTGGCTCCTTACAGTCGCCTTATCTTGGAAAGGAATTGCATGCTCAGATAATAAAGAATTCTATGGAAGAAAATCTTCAAATTGGGAGTACACTTGTTTGGTTCTACTGTAAATGTGGAGAGTACACATATGCTGCAAGAATTCTTGAAGCGATGCCTGACCGTGATGCTATCTCATGGACTGCTCTGATTTCCGGCTACAATAATCTAGGTCATAATGTTGAAGCACTTAAATCATTAGATGATATGCTATGGGATGGTGTAAAACCAAATACATACACTTACTCCTCGGCTCTGAAAGCTTGTGCAAAATTGGAGGCTCTGCAATATGGAAGGAAGATCCATGGTTTTGTTAACAAGACTCAAGATTTCTCCAATGTGTTTGTGGGAAGCTCACTTATCGATATGTACATGAGGTGTGGAAAAGTCGACGAAGCCCGAAGTGTCTTTGATGCCATGCCAGAACATAACCTTGTGACATGGAAAGTGATTATTACAGGATTTGCTCAGAATGGCCTCTGTGAAGAGGCTTTGAAGTACATGTACCTAATGCAACAAGAAGGGCATGAGGTTGATGATTTTGTGCTCTCAACAGTTCTGACATCATGTGGAGATCTTCAATGGAAATCCATCTCCTTCTCTGACTCAGTTGCTGGTTCAGTTTCAGCTAGGCAGTAG - >LOC_Os03g44210.1
ATGCTGTTCTGCTGCCCTGCTTCTCCTCCCCCTCCAATCCAAGCTTCTTCTCTCCCGCCGTTCCGGACGAACAGCTTGTCTCCGACCGTACGTGGCGGGAATGCCGCGCCACGACGCCCTCTCGCGCGGTCTTTCTCGGCCAAGAACCGGTCCCCGCGAGCGCGGAACCGCCACGCGGCAGCAGGTGATGGTGGTGGTTATGGGTCTCCGGAGCAAGAGGGGCGTGGGGAATCGTCCCTCCCGAACGCCGAGGCGCTCGCGTCCTCGCTGCGTGATTGCGGCGGCGCGGACGGCGTCCGGCGGGTGCACGCGGTTGCTGTCCGGTCGCTCGACAGCCTGGGGACGTTCGTCGCCAACAATTTGATCAGCGCGTATGCCAGGTTCGACGAGGTTTCGGATGCCAGGGAGGTGTTCGACGAAATGCCGGAGAGGAGTGTTGTGTCGTGGACGGCGATGATGAATGTGTATCTGAAACTAGGACACTACGGCGAGGTTGTGAGGCTCTTCTTTGATATGGTGGGAAGCGGAGTGCAAGGTAACAGCTTGACTTTTGTTTGCTTGCTGAAATCATGCGGCGAGCGTTGCGATGCTAAGCTAGGGCAGCAGGTCCACTGTTGTATTGTCAAAGGTGGGTGGAGCAATGTGATAGTGGACAGTGCTATTGCACACTTCTATGCTCAATGCGGTGATGTTGCTAGTGCTTCAGCCATATTTGATAAGATGGCCTATCGTGATGTCATCTCATGGACAACAATGATCACAGCTTATGTGCAGCATGGGCATGGGGGCCAAGCTCTTAGAATGTTTTCAGAAATGGTGTCAGAAGGATTTCGACCAAATGAGTTCACTGTGTGCAGTGTCCTCAAGGCTTGTGCAGAAGAGAAAGCTGTGAGATTTGGGAAGCAGCTGCATTGTGCTGTTTTGAAGAAAATGTACAAAAATGACATCCATATCGGCAGTGCCCTTGTCACCATGTATGCTAGATGCGGTGAAGTTTTTGATGCTCAGGCAGTGTTTGATATGATGCCACGAAGAAACACTATTACATGGACTTCTATGATCTCTGGCTATGCACAAAGTGGCCATGGAGAAAAGGCTATCTTGTTGTTCAGAAAGATGAAGATGCGCCGAGTATTTGTTAACAACCTCACCATTGTTGGTCTCCTAAGTGCCTGTGGCTCCTTACAGTCGCCTTATCTTGGAAAGGAATTGCATGCTCAGATAATAAAGAATTCTATGGAAGAAAATCTTCAAATTGGGAGTACACTTGTTTGGTTCTACTGTAAATGTGGAGAGTACACATATGCTGCAAGAATTCTTGAAGCGATGCCTGACCGTGATGCTATCTCATGGACTGCTCTGATTTCCGGCTACAATAATCTAGGTCATAATGTTGAAGCACTTAAATCATTAGATGATATGCTATGGGATGGTGTAAAACCAAATACATACACTTACTCCTCGGCTCTGAAAGCTTGTGCAAAATTGGAGGCTCTGCAATATGGAAGGAAGATCCATGGTTTTGTTAACAAGACTCAAGATTTCTCCAATGTGTTTGTGGGAAGCTCACTTATCGATATGTACATGAGGTGTGGAAAAGTCGACGAAGCCCGAAGTGTCTTTGATGCCATGCCAGAACATAACCTTGTGACATGGAAAGTGATTATTACAGGATTTGCTCAGAATGGCCTCTGTGAAGAGGCTTTGAAGTACATGTACCTAATGCAACAAGAAGGGCATGAGGTTGATGATTTTGTGCTCTCAACAGTTCTGACATCATGTGGAGATCTTCAATGGAAATCCATCTCCTTCTCTGACTCAGTTGCTGGTTCAGTTTCAGCTAGGCAGTAG
Protein Sequence
- >LOC_Os03g44210.2
MLFCCPASPPPPIQASSLPPFRTNSLSPTVRGGNAAPRRPLARSFSAKNRSPRARNRHAAAGDGGGYGSPEQEGRGESSLPNAEALASSLRDCGGADGVRRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDLQWKSISFSDSVAGSVSARQ* - >LOC_Os03g44210.1
MLFCCPASPPPPIQASSLPPFRTNSLSPTVRGGNAAPRRPLARSFSAKNRSPRARNRHAAAGDGGGYGSPEQEGRGESSLPNAEALASSLRDCGGADGVRRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDLQWKSISFSDSVAGSVSARQ*