Gene Details:

Functional Descriptions:

  • RESULTS: Transcript abundance of one nuclear located basic helix-loop-helix family transcription factor, OsIRO3, is up-regulated from 25- to 90-fold under Fe deficiency in both root and shoot respectively.
  • CONCLUSION: A novel Fe regulated bHLH transcription factor (OsIRO3) that plays an important role for Fe homeostasis in rice was identified.
  • Furthermore, the Fe concentration in shoots of transgenic rice plants over-expressing OsIRO3 was less than that in wild-type plants.
  • OsIRO3 is expressed in the roots, leaves, and base nodes, with a higher level in leaf blades at the vegetative growth stage.
  • Knockout of OsIRO3 resulted in a hypersensitivity to Fe deficiency, with severe necrosis on young leaves and defective root development.
  • OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice.
  • However, the molecular mechanisms by which OsIRO3 regulate Fe homeostasis is unclear.
  • Here, we report that OsIRO3 is essential for responding to Fe deficiency and maintaining Fe homeostasis in rice.
  • Thus, we conclude that OsIRO3 plays a key role in responding to Fe deficiency and regulates NA levels by directly, negatively regulating the OsNAS3 expression.
  • A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.
  • We place our results in the context of the existing literature and generate a model describing the role of OsIRO3 in rice Fe homeostasis and reinforce the essential function of OsIRO3 in the rice Fe deficiency response.
  • Further analysis revealed that OsIRO3 directly regulated the expression of IRON-RELATED BHLH TRANSCRIPTION FACTOR 2 (OsIRO2), which encodes a positive regulator of the Fe uptake system.
  • Loss-of-function of OsIRO3 caused upregulation of Fe deficiency-associated genes in the root.
  • OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.
  • Further investigation demonstrated that OsIRO3 interacted with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1(OsPRI1) and OsPRI2, and.
  • This work sheds light on the molecular mechanism by which OsIRO3 modulates Fe homeostasis in rice.
  • OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os03g26210.3
    TGTTATTGCTCCCTTCGCGGCTCTCCTTCTTCTTCTTCAATCTTCGCCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGTCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCTGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATGGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTCTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTGCAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTCAATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTTTTATCCCCTTGCAAATATTGATGTCCAATTAAAATGCATTTATGCGATAATTGCAATCGAAGGAAAAGTTATGAAAG
  • >LOC_Os03g26210.1
    TGTTATTGCTCCCTTCGCGGCTCTCCTTCTTCTTCTTCAATCTTCGCCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGTCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCTGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATGGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTCTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTGCAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTCAATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTTTTATCCCCTTGCAAATATTGATGTCCAATTAAAATGCATTTATGCGATAATTGCAATCGAAGGAAAAGTTATGAAAG
  • >LOC_Os03g26210.2
    TGTTATTGCTCCCTTCGCGGCTCTCCTTCTTCTTCTTCAATCTTCGCCCTCCTCCTCCTCCTCGTACGCGCCCACGCGGTTCTCTTTCTGCCCCCTCGATCGATTTGAGGGAACGGAAGGGGGAGGTTTTTGGAGGAGGCCATGGTGCCGTCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCTGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATGGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTCTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTGCAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATTCCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCCAACCAATCAGAAACTCACTTTGAGCCTAGAGGATATACTACTGAATGATGTGCATGTAAATATTTCAATCTCCCTTTTGTTTCTGTAAACTCTAGTGAGAATAGAACCCGTTTTATCCCCTTGCAAATATTGATGTCCAATTAAAATGCATTTATGCGATAATTGCAATCGAAGGAAAAGTTATGAAAG
CDS Sequence
  • >LOC_Os03g26210.3
    ATGGTGCCGTCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCTGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATGGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTCTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTGCAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAG
  • >LOC_Os03g26210.1
    ATGGTGCCGTCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCTGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATGGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTCTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTGCAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAG
  • >LOC_Os03g26210.2
    ATGGTGCCGTCGGAGAGGGGGGACGTCGCCACCGCCATCAGACCCGCCGCTGCCGACAAGCTCGTCCATGGGCCTATCTCTGACAAGAAGTGCCGGAAGAAGGTCCCGAGGAAGGTTCACAAATCTGAGAGGGAGAAGCTTAAACGCGGGCATCTCAATGATCTGTTCGGCGAGCTGGGTAATATGCTAGAAGCGGATAGGCAGAGTAATGGGAAGGCATGCATACTAACTGACACCACCCGGATCTTAAGAGATCTGCTTTCTCAAGTAAAATCTCTCCGGCAAGAAAACAGCACCCTCCAGAATGAATCTAATTATGTTACGATGGAAAGGAATGAGTTGCAGGATGAAAATGGTGCGCTACGCAGCGAAATCTCTGACCTCCAAAACGAGCTGAGGATGCGTGCGACAGGGAGTCCAGGTTGGGGCCATGGCGCGACTGGATCACCTCTCCCCGTTCCTCCCTCTCCAGGCACGGTTTTCCCATCGCAGCAGCCAATGCAGCCATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTGCAAGACAGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCAGAAGACCAGGAGGCTCCGAACAATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGATGAGCAAATGTAG
Protein Sequence
  • >LOC_Os03g26210.3
    MVPSERGDVATAIRPAAADKLVHGPISDKKCRKKVPRKVHKSEREKLKRGHLNDLFGELGNMLEADRQSNGKACILTDTTRILRDLLSQVKSLRQENSTLQNESNYVTMERNELQDENGALRSEISDLQNELRMRATGSPGWGHGATGSPLPVPPSPGTVFPSQQPMQPSPMTTSTVFPLQQPLPQPTVIEPSARQPLELKLFLEAPPAEDPEPSEDQEAPNNVARPQPRYPTEASSWPISLGLPRMEDEQM*
  • >LOC_Os03g26210.1
    MVPSERGDVATAIRPAAADKLVHGPISDKKCRKKVPRKVHKSEREKLKRGHLNDLFGELGNMLEADRQSNGKACILTDTTRILRDLLSQVKSLRQENSTLQNESNYVTMERNELQDENGALRSEISDLQNELRMRATGSPGWGHGATGSPLPVPPSPGTVFPSQQPMQPSPMTTSTVFPLQQPLPQPTVIEPSARQPLELKLFLEAPPAEDPEPSEDQEAPNNVARPQPRYPTEASSWPISLGLPRMEDEQM*
  • >LOC_Os03g26210.2
    MVPSERGDVATAIRPAAADKLVHGPISDKKCRKKVPRKVHKSEREKLKRGHLNDLFGELGNMLEADRQSNGKACILTDTTRILRDLLSQVKSLRQENSTLQNESNYVTMERNELQDENGALRSEISDLQNELRMRATGSPGWGHGATGSPLPVPPSPGTVFPSQQPMQPSPMTTSTVFPLQQPLPQPTVIEPSARQPLELKLFLEAPPAEDPEPSEDQEAPNNVARPQPRYPTEASSWPISLGLPRMEDEQM*