Information report for OsClpP5
Gene Details
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Functional Descriptions
- Here, we show that a spontaneous mutable virescent allele, pyl-v, is caused by the disruption of the nuclear-coded essential chloroplast protease gene, OsClpP5, due to insertion of a 607-bp non-autonomous DNA transposon, non-autonomous DNA-based active rice transposon one (nDart1), belonging to the hAT superfamily.
Functional Keywords
Literature and News
- A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants . DOI: 10.1104/pp.113.217604 ; PMID: 23803583
- An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice . DOI: 10.1111/j.1365-313X.2005.02600.x ; PMID: 16367953
- Plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice . DOI: 10.1186/s12284-021-00489-6 ; PMID: 34018050
Gene Resources
- UniProt: Q50LH5
- EMBL: AB116073, AK060518, AK105977
- AlphaFoldDB: Q50LH5
- EnsemblPlants: Os03t0308100-01, Os03t0308100-02, Os03t0308100-03
- Gramene: Os03t0308100-01, Os03t0308100-02, Os03t0308100-03
- KEGG: dosa:Os03g0308100, osa:4332615
- Orthologous matrix: FFMSPKE
- InterPro: IPR001907, IPR018215, IPR023562
- PANTHER: PTHR10381, PTHR10381:SF12
- SUPFAM: SSF52096
- PROSITE: PS00381, PS00382
- Gene3D: 3.90.226.10
- OrthoDB: Q50LH5
- SWISS-MODEL: Q50LH5
- Conserved Domain Database: cd07017
- eggNOG: KOG0840
Sequences
cDNA Sequence
- >LOC_Os03g19510.1
GTCGGCATGGCCCGCGTCTTCTCCTCGTCTTCCTCTCTCTCGAGTCTCGAAGAAGACACACACTATTCTCTCTTCTTCTTACCACCCTCTCCCGGATAAGAGGCGCAACCAAAGCCCCCACCCTCGCCCAAAACCCCCACGAGCCGCGGCCATGGCGACCACCACCACCACCCCCTCCTCCTCTCTCACCGCCCCTCTCCTCCGCCCGAGCTCGAACGCGAACCCCGCCCCGAGATCTCTGCCGCTCCTCAGGAGCCGGAGGTGCGCTCGGGCCGTGGCGACCGCCGCCGCCGCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCGGGGCAGGAACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGCCAGCTCTTCCAGCACAGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAACATCATCGTTGCCCAGCTGCTATATCTCGATGCCATCGATCCTAACAAGGATATCATTATGTATGTGAATTCTCCTGGAGGATCAGTGACAGCTGGGATGGCCATATTCGACACGATGAAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGGGAAGCGATACAGCTTACCTAACTCAAGAATAATGATCCATCAACCTCTCGGAGGAGCCCAAGGACAAGAGACTGATCTTGAGATCCAGGCTAATGAGATGCTGCATCACAAGGCTAACCTGAATGGATACCTAGCATACCACACTGGGCAGCCCCTAGATAAGATCAACGTAGATACTGACCGTGATTACTTCATGAGCGCGAAGGAGGCAAAGGAGTATGGTCTAATTGATGGAGTTATCATGAATCCCCTTAAAGCCCTTCAACCGCTTCCTGCTTCTAGTTAGCCATGGAGTGCTCAATCTCCACGGAGCATTTTTTGGTTATCTTTTAGAACTGTTATTGCATCCACTGTTTTTATTAGCTTGGCAAGATAGTTTTGCGATTCCACAAGCAACCACATCCTGAGGCTTCAAAGTTTGTACAATACAGATGTACTACTAGGAGGATATCTTCTGCGATGAATATTGCAACTTATTTGATGTACTATTAGGAGGATATCTTCTGCGATGAATATTGCAACTTATTTGATACTCCCTCTGTTTCATGCCAAGTCGATTTGATTTTTTTTCCTTAGACAATTTTCTGTAGGTTTGACTAAATTTATCAAAAAATTAGCATAATCTACAACACTAAA
CDS Sequence
- >LOC_Os03g19510.1
ATGGCGACCACCACCACCACCCCCTCCTCCTCTCTCACCGCCCCTCTCCTCCGCCCGAGCTCGAACGCGAACCCCGCCCCGAGATCTCTGCCGCTCCTCAGGAGCCGGAGGTGCGCTCGGGCCGTGGCGACCGCCGCCGCCGCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCGGGGCAGGAACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGCCAGCTCTTCCAGCACAGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAACATCATCGTTGCCCAGCTGCTATATCTCGATGCCATCGATCCTAACAAGGATATCATTATGTATGTGAATTCTCCTGGAGGATCAGTGACAGCTGGGATGGCCATATTCGACACGATGAAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGGGAAGCGATACAGCTTACCTAACTCAAGAATAATGATCCATCAACCTCTCGGAGGAGCCCAAGGACAAGAGACTGATCTTGAGATCCAGGCTAATGAGATGCTGCATCACAAGGCTAACCTGAATGGATACCTAGCATACCACACTGGGCAGCCCCTAGATAAGATCAACGTAGATACTGACCGTGATTACTTCATGAGCGCGAAGGAGGCAAAGGAGTATGGTCTAATTGATGGAGTTATCATGAATCCCCTTAAAGCCCTTCAACCGCTTCCTGCTTCTAGTTAG
Protein Sequence
- >LOC_Os03g19510.1
MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVATAAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQPLPASS*