Information report for WSL4;CUT1L
Gene Details
|
|
Functional Descriptions
- HMS1 catalyzed the biosynthesis of the C26 and C28 VLCFAs, contributing to the formation of bacula and tryphine in the pollen wall, which protect the pollen from dehydration.
- Under low-humidity, HMS1 pollen showed poor adhesion and reduced germination on the stigmas, which could be rescued by increasing humidity.
- HMS1 Interacts with HMS1I to Regulate Very-long-chain Fatty Acid Biosynthesis and the Humidity-sensitive Genic Male Sterility in Rice (Oryza sativa).
- The HMS1 mutant displayed decreased seed setting at low-humidity, but normal seed setting at high-humidity.
- Furthermore, both japonica and indica rice varieties with defective HMS1 exhibited HGMS, suggesting that HMS1 could potentially be used in hybrid breeding.
Functional Keywords
- pollen , sterility , seed , breeding , male-sterility , pollen-wall
Literature and News
- A β-Ketoacyl-CoA Synthase Is Involved in Rice Leaf Cuticular Wax Synthesis and Requires a CER2-LIKE Protein as a Cofactor . DOI: 10.1104/pp.16.01527 ; PMID: 27913740
- Ethylene Biosynthesis Is Promoted by Very-Long-Chain Fatty Acids during Lysigenous Aerenchyma Formation in Rice Roots . DOI: 10.1104/pp.15.00106 ; PMID: 26036614
- HMS1 interacts with HMS1I to regulate very-long-chain fatty acid biosynthesis and the humidity-sensitive genic male sterility in rice (Oryza sativa) . DOI: 10.1111/nph.16288 ; PMID: 31663135
Gene Resources
- UniProt: Q10PV5
- EMBL: AK066587, AK104714, AK106150
- AlphaFoldDB: Q10PV5
- EnsemblPlants: Os03t0220100-01
- Gramene: Os03t0220100-01
- KEGG: osa:4332090
- Orthologous matrix: WYELNFI
- InterPro: IPR012392, IPR013601, IPR013747
- PANTHER: PTHR31561
- SUPFAM: SSF53901
- Gene3D: 3.40.47.10
- OrthoDB: Q10PV5
- SWISS-MODEL: Q10PV5
- Conserved Domain Database: cd00831
- eggNOG: ENOG502QPKZ
Sequences
cDNA Sequence
- >LOC_Os03g12030.1
TACTCCTCGTCATCTCGTCTCGTCTCCGCCACCGTGCGCGCGTCCCCTATATTAGACCCCCCAACCGGGCACCGGACACACCATCACCAACACACCACTGCAAACCCATCCGCCTCCGCACCGCATCGCACCTACAAATTGTGCACGCTGCACCGCTCAAAAAAAAGAAGAAACTAAAGTCGTACGTAGGACGCGGCGTGCGAGCGTTGGTGCGGTGCGCGGCGGCGCGCGGGGAAGTAGTGAGAGCATCGATCATGCCGGGGGCGGCGGGGTACTCCGGGTCGGTGAAGCTGAAGTACGTGAAGCTGGGGTACCAGTATCTGGTGAACCACTTCCTGACGCTGCTGCTGGTGCCGGTGATGGCGGCGACGGCGCTGGAGCTGGCGCGGATGGGGCCCGGTGAGCTGCTGTCGCTGTGGCGGTCGCTGCAGCTCGACCTCGTCCACATCCTCTGCTCGGTGTTCCTCGTCGTGTTCGTCGGCACGGTGTACTTCATGTCGCGGCCAAGGCCGGTGTACCTCGTCGACTACTCCTGCTACAAGCCGCCGCCCAGCTGCCGGGTGCCGTTCGCCACGTTCATGGAGCACACGCGCCTCATCACCGACGACGAGAAGAGCGTGCGGTTCCAGACCAGGATCCTCGAGCGGTCGGGGCTCGGGGAGGAGACCTGCCTCCCGCCGGCCAACCACTACATCCCGCCTAACCCGTCCATGGAGGCGTCGCGCGCCGAGGCCCAGCTCGTAATCTTCTCCGCCATCGACGACCTCGTCCGCCGCACCGGACTCAAGCCCAAGGACATCGACATCCTCGTCGTCAACTGCAGTCTCTTCTCCCCGACACCGTCGCTCTCCGCCATGATCATCAACAAGTACAAGCTCCGCAGCAACATCCGCAGCTTCAACCTGTCCGGCATGGGCTGCAGCGCCGGCCTCATCTCCCTCGACCTCGCCCGCGACATGCTCCAGGTGCATCCCAACTCGAACGCGCTGGTGGTGTCGACGGAGATCATCACACCAAACTTCTACTGGGGAACCCGGCGGGACATGATGCTGCCCAACTGCCTGTTCCGGATGGGCGCGGCGGCGATCCTGCTGTCGAACAGGAGGAGGGAGGCGAGGAGGGCCAAGTACAGGCTGATGCACGTGGTCCGCACGCACAAGGGCGCCGACGACCGCGCGTACCGGTGCGTGTACGAGGAGGAGGACGAGCAGGGGCACTCGGGGATCTCGCTGTCCAAGGAGCTGATGGCCATCGCCGGCGACGCGCTCAAGTCGAACATCACCACCATCGGCCCGCTGGTGCTGCCCATGTCGGAGCAGCTGCTCTTCTTCTTCCGCCTCGTCGGCCGCAAGCTCATCAACAAGAAGTGGAAGCCGTACATCCCGGACTTCAAGCTGGCGTTCGAGCACTTCTGCATCCACGCCGGGGGACGCGCCGTGATCGACGAGCTGCAGAAGAACCTGGACCTGTCCGCGCAGCACGTGGAGGCGTCCCGCATGACGCTGCACCGGTTCGGCAACACGTCGAGCAGCTCGCTCTGGTACGAGCTCGCCTACATCGAGGCCAAGGGGCGCATGCGCCGCGGCGACCGCGTCTGGCAGATCGGCTTCGGCAGCGGATTCAAGTGCAACAGCGCCGTCTGGAAGTGCCTCCGCACAGTCAAGACGCCCGCCGACGGGCCGTGGGACGACTGCATCCACCGCTACCCCGTCGACATCCCGGAGGTCGTCAAGCTGTGATCGAATCCATGGTAGCCTCAGCCTCGCCCTCGCCGGCGGCCGTCGCGCCGCCGCCGCATTACCTCCCCTACACCTGTACGTCACCCGCGAAGCGTGCGTCCTCAAACTTTGGAGCTTCTTAATTTGTGGTGTTTTCTTCTTTCCTCCTTTCCCCTCCCTCGCTTCTTAATTTTTTTTCTTGTCTTCCTTTTATTTTTATTTTTTTCGCTATAAACACGGATTAAATCGATATACTTTGTCTGATGTGTCACATAAGGAATGATCATTCACAGGAGATTAATTATTATATATTTTTTTAATTTTCCAA
CDS Sequence
- >LOC_Os03g12030.1
ATGCCGGGGGCGGCGGGGTACTCCGGGTCGGTGAAGCTGAAGTACGTGAAGCTGGGGTACCAGTATCTGGTGAACCACTTCCTGACGCTGCTGCTGGTGCCGGTGATGGCGGCGACGGCGCTGGAGCTGGCGCGGATGGGGCCCGGTGAGCTGCTGTCGCTGTGGCGGTCGCTGCAGCTCGACCTCGTCCACATCCTCTGCTCGGTGTTCCTCGTCGTGTTCGTCGGCACGGTGTACTTCATGTCGCGGCCAAGGCCGGTGTACCTCGTCGACTACTCCTGCTACAAGCCGCCGCCCAGCTGCCGGGTGCCGTTCGCCACGTTCATGGAGCACACGCGCCTCATCACCGACGACGAGAAGAGCGTGCGGTTCCAGACCAGGATCCTCGAGCGGTCGGGGCTCGGGGAGGAGACCTGCCTCCCGCCGGCCAACCACTACATCCCGCCTAACCCGTCCATGGAGGCGTCGCGCGCCGAGGCCCAGCTCGTAATCTTCTCCGCCATCGACGACCTCGTCCGCCGCACCGGACTCAAGCCCAAGGACATCGACATCCTCGTCGTCAACTGCAGTCTCTTCTCCCCGACACCGTCGCTCTCCGCCATGATCATCAACAAGTACAAGCTCCGCAGCAACATCCGCAGCTTCAACCTGTCCGGCATGGGCTGCAGCGCCGGCCTCATCTCCCTCGACCTCGCCCGCGACATGCTCCAGGTGCATCCCAACTCGAACGCGCTGGTGGTGTCGACGGAGATCATCACACCAAACTTCTACTGGGGAACCCGGCGGGACATGATGCTGCCCAACTGCCTGTTCCGGATGGGCGCGGCGGCGATCCTGCTGTCGAACAGGAGGAGGGAGGCGAGGAGGGCCAAGTACAGGCTGATGCACGTGGTCCGCACGCACAAGGGCGCCGACGACCGCGCGTACCGGTGCGTGTACGAGGAGGAGGACGAGCAGGGGCACTCGGGGATCTCGCTGTCCAAGGAGCTGATGGCCATCGCCGGCGACGCGCTCAAGTCGAACATCACCACCATCGGCCCGCTGGTGCTGCCCATGTCGGAGCAGCTGCTCTTCTTCTTCCGCCTCGTCGGCCGCAAGCTCATCAACAAGAAGTGGAAGCCGTACATCCCGGACTTCAAGCTGGCGTTCGAGCACTTCTGCATCCACGCCGGGGGACGCGCCGTGATCGACGAGCTGCAGAAGAACCTGGACCTGTCCGCGCAGCACGTGGAGGCGTCCCGCATGACGCTGCACCGGTTCGGCAACACGTCGAGCAGCTCGCTCTGGTACGAGCTCGCCTACATCGAGGCCAAGGGGCGCATGCGCCGCGGCGACCGCGTCTGGCAGATCGGCTTCGGCAGCGGATTCAAGTGCAACAGCGCCGTCTGGAAGTGCCTCCGCACAGTCAAGACGCCCGCCGACGGGCCGTGGGACGACTGCATCCACCGCTACCCCGTCGACATCCCGGAGGTCGTCAAGCTGTGA
Protein Sequence
- >LOC_Os03g12030.1
MPGAAGYSGSVKLKYVKLGYQYLVNHFLTLLLVPVMAATALELARMGPGELLSLWRSLQLDLVHILCSVFLVVFVGTVYFMSRPRPVYLVDYSCYKPPPSCRVPFATFMEHTRLITDDEKSVRFQTRILERSGLGEETCLPPANHYIPPNPSMEASRAEAQLVIFSAIDDLVRRTGLKPKDIDILVVNCSLFSPTPSLSAMIINKYKLRSNIRSFNLSGMGCSAGLISLDLARDMLQVHPNSNALVVSTEIITPNFYWGTRRDMMLPNCLFRMGAAAILLSNRRREARRAKYRLMHVVRTHKGADDRAYRCVYEEEDEQGHSGISLSKELMAIAGDALKSNITTIGPLVLPMSEQLLFFFRLVGRKLINKKWKPYIPDFKLAFEHFCIHAGGRAVIDELQKNLDLSAQHVEASRMTLHRFGNTSSSSLWYELAYIEAKGRMRRGDRVWQIGFGSGFKCNSAVWKCLRTVKTPADGPWDDCIHRYPVDIPEVVKL*