Information report for TCD3;OsPUS1
Gene Details
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Functional Descriptions
- Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice.
- The disruption of TCD3 severely affected the transcript levels of various chloroplast-associated genes, as well as ribosomal genes involved in chloroplast rRNA assembly at low temperature (20<U+2009>
C), whereas the transcript levels of these genes were normal at high temperature (32<U+2009> C). - Map-based cloning, complementation and knockout tests revealed that TCD3 encodes a chloroplast-localized
synthase.
Functional Keywords
Literature and News
- Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice . DOI: 10.1038/s41598-020-65467-2 ; PMID: 32444695
- The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice . DOI: 10.1111/tpj.15987 ; PMID: 36134434
Gene Resources
- UniProt: Q0DV30
- EMBL: AP008209
- AlphaFoldDB: Q0DV30
- EnsemblPlants: Os03t0152700-01
- Gramene: Os03t0152700-01
- KEGG: dosa:Os03g0152700
- Orthologous matrix: KIDGVMC
- InterPro: IPR002942, IPR006145, IPR018496
- PANTHER: PTHR47683, PTHR47683:SF2
- SUPFAM: SSF55120, SSF55174
- PROSITE: PS01149, PS50889
- Gene3D: 3.10.290.10, 3.30.70.1560, 3.30.70.580
- SWISS-MODEL: Q0DV30
- Conserved Domain Database: cd00165
Sequences
cDNA Sequence
- >LOC_Os03g05806.1
GATAAACCCCCTCCCACACTCTCCACTCTCGAGCCATGGCCCTCGCCGCCGCCGCCGCCGCCGCGGCAGCGGCCGTCTCCTTCCCGCCCTTGCTCTCCCGTCCCGCCGCCTGCGTGCTCCTCCGCTGCGGCCGCCACCGCCGCCTCCCTCCCCTCCTCCTCCGCGCCGCCTCCTCCTCCACCTCCAGCGCCCCGGACTTCAACATCACCTTCGCGGAGCCCACCGCCCCCGCCCCCTCGAAACCCAAACCCTCATCCCCCGCCCCGTCCGCGGAGCAGGTGGTGCCGTGGATCGTGCGTGGGGAGGACGGCAAGCCGTCCATGCGCACCGCGCCGCCGCCGGACGTCCTCCAGGCCATTGCGCTGGCGGAGGCGGAGGCCAAGAAGGCCAAGAAGGACCCCCGCAGGAGCCACAAGGGCGCCGCCGCCCTTGCCACCCCCGTCGCCAATGCCAAGGTGAGGGAGAGGAAGGCCGCCCCCGCGACGGCGCCGCCCAAGTTCTCCAAGGCCGCGAGGAGATTCTACAATGAGAATATCAAGGAGCACGAACCGCAGCGGCTCGCCAAGGTCCTTGCCGCGGCAGGAGTGGCCTCACGAAGGACATGCGAGGAGCTCATCTTCCAAGGGAAGGTGACCGTCAATGGTTCTGTCTGCACTGCACCCCAGACCAAAGTTGACATCTCAAAGGATTCTATCTATGTTAATGGAAACCGCATTTCCAAGAAGCTTCCTCCGAAGTTATATTTTGCTGTTAACAAGCCAAAAGGGTATATTTGTTCCTGTGGTGAACCAAAGTCCATTATCTCCTTATTTGATGACTATTTGAAGGGTTGGAACAAGATTCAACCAGGAGTACCAAAACCGCGCTTGTTTACTGTGGGTCGTCTTGATGTTGCTACAAGTGGTTTGATAATAATTACAAATGACGGTGAGTTTGCCCAGAAACTCTCACACCCTTCGTCAAATATAATGAAGGAATATGTGGTAACTATAGATGGACCAGTGCACAGAAATCACCTTATAGCTATCAGTGAAGGCACAAAAATTGATGGCGTCAAATGTATACCTGATCTAGTGGAACCATTGGATGTACAATCCAATACAAAAAGGACCCGGATTAGAATAGCGGTTCATGAAGGAAGAAATCATGAAGTTCGTGAACTCGTGCAGAATGCAGGCCTAGAGGTTTGTTTGTATGCTCAATATTTTTTTTCTCAAGTTTTCCCTTTATGTTTTATTGATCATATCTTAACATTTCCCATTGTGCAATATCAAATTTGGTAACTCAAGTAATTTGGTTCTAGAATCAAGAGCAAATGTTGTTTGTTAATCCCTTATCTGATTGAATTGTTAGAAATGAGGACGATTAATGATCAGTAGCACTATTGACAAATTAACAGTATGTTTTAGAAGAGGATTGAAATGCATCTTATGTGCTTCAGAGTCTTCTTTTCAACAGAAATATTATTATGATGATCGAATATTACAACGACAGAGATTAGCAGTGTGCTAAAGACATAGTGTACTTACTAAAAAAATGTCATACACCTAGCACATTGCGCTTCAGAGTTTTTCTTCTCAAACCTGCTTATGATGATATACTACATTCTACTATATAGTTCTTAGAACAGTAGCTTTTGAGATGCCTAGCATGTTTATTAGTTGATATTATCTCAAAGCACTTTGCAGATCTCAATTCTTGTGCTTCTACAAGCACTACAGTGCATAAGATAAATTGTACTAACTGTAATACCTGTACAACGGAACATCACTTGTCTGAAAGATTTTGTTCACATCAGCTTGGGATTTCTTCCTAGTCTTAGGTGTTTCTAAAAACAACAGTGAAGTCTAAGAAGTGCACTTATCTTATATTCTTATGGGTGAGGTAGGCATATATCCTTGTGTACCAGTAAGTGCGTTTTTTGCTGGAATTGTATACCTTGGAATGTTTTCCCCCCTCTGGGAAGTAGCTGATATTTTATCCTTGTTCTTGATAGGTTTATGCCTTGAAACGTGTTCGGATAGGCAGGTTCAGGCTTCCACCAGATCTCAGGTAATGCAGTTTACCACATCTGTATATGTTTGAAATGGACCATTATACATTTACACTGTCTTTTTAGCATCTTAGCACCTACTCGACATGACATGTTCTTTTCATGTAAAAGATATGAACACTGAACACTATATACTGTAAGAAAAAGATCATGTCTATGAAACATCGCAAGAAAGAGCATGGCACTTTCTTGCTGTAAATGATATGAACAATAACTATATCATAAGACCTGTCAAATATTGTGAGGTAACATGGTGCTGTATACTTGATAGCATCTGCCAGCAGGCATGCTAAGACCTGTCCAGTATAGTTGGCTGATTCAAAGATAACTGGTATGCCATCATTTTAGAGGCATGATTCCATGCACAAAATGATAAATTAATTTGGTATCCTGGACCTTTTTGTTTTCCATTTATTCTTACAGACTGGGAGGAAAAATAACACTGAATATTAACCCTTGTTGGATGTTACATGTTCAGAATTGGGAAGTTTGTTGAACTTAAACAAACTGATCTCAAGTCACTGGAAGGCAAGAAGTAGAGTGAAAACCTGGGTCCACGGGTGCTAATTTCGACGGTAATGTGGATCCGCACAACTCCATCGAAGAATAGCAATTGCTCCTTCTCACGTCAAGGTGAAAGCTACTCCACACCAATGCCTGTACGTTAAGTTGGTGCGGATGGTGAAGATAGACAAAGACATACTTTTGGCTTGAAGAACACACAAGCTGCTTGGAAGAACATTTTCCAGTGCCCAACAAGGCAGCAGTGTTTGGTGGTGGAGATGGGATATTGTCAGGTTGAGGGTTAGTGATAGAGGCTACACTTTATCAATATATATGGTGGTGGAGATGGGATATTGTCAGGTTGAGGGTTAGTGATAGAGGCTACACTTTATCAATATAGATGCTCTTACGTGAGGTACAGGAGGTATACGAACCATTTTGCTACACGATTCAACACTTATCAACAAGTAGCAATCCAGGAGGTATACGAACCAAATTCTCTCGTAATCTGTATTTTGAGCAGGAATTAACCATGTTATGGTTCTGCTACAGCTGGAATATTATTGTGATTGACAAAAGCATGTTCCTTTTTATTCTTGAACATTTTGCCAATGGTAGCAATGCTACCCAAAAAAAGACATTGTATAAGTGGGTATTTGAAAGTTGCTAAAAAATGGAGTAAATTTCAT
CDS Sequence
- >LOC_Os03g05806.1
ATGGCCCTCGCCGCCGCCGCCGCCGCCGCGGCAGCGGCCGTCTCCTTCCCGCCCTTGCTCTCCCGTCCCGCCGCCTGCGTGCTCCTCCGCTGCGGCCGCCACCGCCGCCTCCCTCCCCTCCTCCTCCGCGCCGCCTCCTCCTCCACCTCCAGCGCCCCGGACTTCAACATCACCTTCGCGGAGCCCACCGCCCCCGCCCCCTCGAAACCCAAACCCTCATCCCCCGCCCCGTCCGCGGAGCAGGTGGTGCCGTGGATCGTGCGTGGGGAGGACGGCAAGCCGTCCATGCGCACCGCGCCGCCGCCGGACGTCCTCCAGGCCATTGCGCTGGCGGAGGCGGAGGCCAAGAAGGCCAAGAAGGACCCCCGCAGGAGCCACAAGGGCGCCGCCGCCCTTGCCACCCCCGTCGCCAATGCCAAGGTGAGGGAGAGGAAGGCCGCCCCCGCGACGGCGCCGCCCAAGTTCTCCAAGGCCGCGAGGAGATTCTACAATGAGAATATCAAGGAGCACGAACCGCAGCGGCTCGCCAAGGTCCTTGCCGCGGCAGGAGTGGCCTCACGAAGGACATGCGAGGAGCTCATCTTCCAAGGGAAGGTGACCGTCAATGGTTCTGTCTGCACTGCACCCCAGACCAAAGTTGACATCTCAAAGGATTCTATCTATGTTAATGGAAACCGCATTTCCAAGAAGCTTCCTCCGAAGTTATATTTTGCTGTTAACAAGCCAAAAGGGTATATTTGTTCCTGTGGTGAACCAAAGTCCATTATCTCCTTATTTGATGACTATTTGAAGGGTTGGAACAAGATTCAACCAGGAGTACCAAAACCGCGCTTGTTTACTGTGGGTCGTCTTGATGTTGCTACAAGTGGTTTGATAATAATTACAAATGACGGTGAGTTTGCCCAGAAACTCTCACACCCTTCGTCAAATATAATGAAGGAATATGTGGTAACTATAGATGGACCAGTGCACAGAAATCACCTTATAGCTATCAGTGAAGGCACAAAAATTGATGGCGTCAAATGTATACCTGATCTAGTGGAACCATTGGATGTACAATCCAATACAAAAAGGACCCGGATTAGAATAGCGGTTCATGAAGGAAGAAATCATGAAGTTCGTGAACTCGTGCAGAATGCAGGCCTAGAGGTTTGTTTGTATGCTCAATATTTTTTTTCTCAAGTTTTCCCTTTATGTTTTATTGATCATATCTTAACATTTCCCATTGTGCAATATCAAATTTGGTAA
Protein Sequence
- >LOC_Os03g05806.1
MALAAAAAAAAAAVSFPPLLSRPAACVLLRCGRHRRLPPLLLRAASSSTSSAPDFNITFAEPTAPAPSKPKPSSPAPSAEQVVPWIVRGEDGKPSMRTAPPPDVLQAIALAEAEAKKAKKDPRRSHKGAAALATPVANAKVRERKAAPATAPPKFSKAARRFYNENIKEHEPQRLAKVLAAAGVASRRTCEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRISKKLPPKLYFAVNKPKGYICSCGEPKSIISLFDDYLKGWNKIQPGVPKPRLFTVGRLDVATSGLIIITNDGEFAQKLSHPSSNIMKEYVVTIDGPVHRNHLIAISEGTKIDGVKCIPDLVEPLDVQSNTKRTRIRIAVHEGRNHEVRELVQNAGLEVCLYAQYFFSQVFPLCFIDHILTFPIVQYQIW*