Gene Details:
- MSU gene ID: LOC_Os03g02560
- RAPdb gene ID: Os03g0116800
- Gene Symbol: SHPR
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Collectively, our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation, and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice.
- We show that SHPR interacts with Oryza sativa SEUSS-LIKE (OsSLK) in the nucleus and is required for OsSLK polyubiquitination and degradation by the ubiquitin 26S-proteasome system (UPS).
Function-related keywords:
- root , nucleus , meristem , Ubiquitin , root-meristem
Literature:
- The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice . DOI: 10.1111/jipb.13492 ; PMID: 37013933
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g02560.1
ACACACACACAAAAAAAGAGAGAACCAAGGCGAAAACGCAACGAAAGGCCGTGGAGGAGGACGGCGTTGCGTTGGCGGTTGGGCGTCTCGTCCCGTCTCGTCTCGTCTCCCCACGACAAGAAGAGAGGCGGTGCGCTTCTCCTCCTCTCCTGTCCTCTCCTCCTCTCGTCGAGCGGCGACGCAGAAGAGTAGTATGGTGCCCGTGGAGATGGAGGTGGACGACCCCCGCGGCTGGGACTTCGTCGACTGGGTCGGCCCCGACGCCTCCGCCTCCATCTTCCGCTCCCTCGACGACCCCGCCGACATCGTCCGCGCCGCCGCCGTCTCCCGCTCCTGGCGCCGATTCGTTGTTGAGAACGAATTCAGCAAGAGCATATGCTTGCGGATATGCCCGGAGATCGCCAATTTCACCAGCGCGGAGGAGGTGAGCAGATCGCCGCCGCAGCCGCCGCACGCCGAGTCCAGCCATGGCGTCCAGCGCAAGGCCCTCGAGAGGGACTACAGGATCTACTCCTACCTCAGCGGCGCCCTCGTCTCCAACAGCCCCTCCATGGACTGCATCCTGCAATGCATCGGCGCCTCCAGCACCGACAACTTCCCCGACGAGACCATCGAGAACACGCTCATACCACACGATCGGGTCAAGCACCGCCCCTCCTACTGGTCCAGCGGCGGCCACGACGATCCCGACACACCAGAGACCTTGACGTACAGGCTCAACTGTGATATGTGCATCGTCGATGAGATCAAGCTGCAGCCATTCAAAGCTTATTTTCAGTATGGACATCCTATATACTCTTCAAAGGCAGTCAGATTCCGGATGGGCCATTCCAAGCTTCCTCATGGCTCGGATTCCTTTGTTACGGTCGAGGATGAGAATCTGATGGCAATTGCTGACGAGAATTATGTGTGGACTTACACTTCACCAGAGTTCCCCATGTTGCAGGAAAATGTGCTACAATCCTTCAAGCTTCCGCGCCCAGTCCTTTGCATTGGTGGTATAGTGAAGGTTGAACTATTGGGCAGAGTACAAAAACAGGAAGCAGATGATAGGTACTACATATGTATCTGCCATGCTCAAGTGAGAGGGCGTTCACTTTCTCCAGTTTTCATGGTTGATACCTCTGATCCTGCTGGTTATTCAGTCCTCAAGTACTTGCCGGATGCAAAAATCCTACGCTCCGAGGACGCAATGCTGGACGATGGCAGCGAATCGCTGGAGTGGCACTCACTTGTTGCTAGGTACAGGCGGATGAGGCATCTAGCGATAATGAATGTGCTTCTTGGACCTGAAGAGTTCATGGATGAAGATGATATTATAGGTGGCGTGTTAATGGATGAAGATGATTTAGGTGGTATGTTAGAGGACGACCCTTTTGTGTAGGCTTGCTGCTACAGAACCACCCGGGTTTTAAACTCTCTGTAGTTAGTTTTCCTTGCAGACATCTGTGAAACATTCTGCAACTTCGTCGAGAAAATACAGTTGTTCTGATCTGGAGAGAAGAACAAATGGATTGTTACTGCGCTCAATCTTGATCATGTTTATATGCTCTGCTTTGTTGTTTATTTATTGCTGGGCTCATTCCGAGAACACACAATATTTATTTCTATGACAGATAGGCCTCACCGTC
CDS Sequence
- >LOC_Os03g02560.1
ATGGTGCCCGTGGAGATGGAGGTGGACGACCCCCGCGGCTGGGACTTCGTCGACTGGGTCGGCCCCGACGCCTCCGCCTCCATCTTCCGCTCCCTCGACGACCCCGCCGACATCGTCCGCGCCGCCGCCGTCTCCCGCTCCTGGCGCCGATTCGTTGTTGAGAACGAATTCAGCAAGAGCATATGCTTGCGGATATGCCCGGAGATCGCCAATTTCACCAGCGCGGAGGAGGTGAGCAGATCGCCGCCGCAGCCGCCGCACGCCGAGTCCAGCCATGGCGTCCAGCGCAAGGCCCTCGAGAGGGACTACAGGATCTACTCCTACCTCAGCGGCGCCCTCGTCTCCAACAGCCCCTCCATGGACTGCATCCTGCAATGCATCGGCGCCTCCAGCACCGACAACTTCCCCGACGAGACCATCGAGAACACGCTCATACCACACGATCGGGTCAAGCACCGCCCCTCCTACTGGTCCAGCGGCGGCCACGACGATCCCGACACACCAGAGACCTTGACGTACAGGCTCAACTGTGATATGTGCATCGTCGATGAGATCAAGCTGCAGCCATTCAAAGCTTATTTTCAGTATGGACATCCTATATACTCTTCAAAGGCAGTCAGATTCCGGATGGGCCATTCCAAGCTTCCTCATGGCTCGGATTCCTTTGTTACGGTCGAGGATGAGAATCTGATGGCAATTGCTGACGAGAATTATGTGTGGACTTACACTTCACCAGAGTTCCCCATGTTGCAGGAAAATGTGCTACAATCCTTCAAGCTTCCGCGCCCAGTCCTTTGCATTGGTGGTATAGTGAAGGTTGAACTATTGGGCAGAGTACAAAAACAGGAAGCAGATGATAGGTACTACATATGTATCTGCCATGCTCAAGTGAGAGGGCGTTCACTTTCTCCAGTTTTCATGGTTGATACCTCTGATCCTGCTGGTTATTCAGTCCTCAAGTACTTGCCGGATGCAAAAATCCTACGCTCCGAGGACGCAATGCTGGACGATGGCAGCGAATCGCTGGAGTGGCACTCACTTGTTGCTAGGTACAGGCGGATGAGGCATCTAGCGATAATGAATGTGCTTCTTGGACCTGAAGAGTTCATGGATGAAGATGATATTATAGGTGGCGTGTTAATGGATGAAGATGATTTAGGTGGTATGTTAGAGGACGACCCTTTTGTGTAG
Protein Sequence
- >LOC_Os03g02560.1
MVPVEMEVDDPRGWDFVDWVGPDASASIFRSLDDPADIVRAAAVSRSWRRFVVENEFSKSICLRICPEIANFTSAEEVSRSPPQPPHAESSHGVQRKALERDYRIYSYLSGALVSNSPSMDCILQCIGASSTDNFPDETIENTLIPHDRVKHRPSYWSSGGHDDPDTPETLTYRLNCDMCIVDEIKLQPFKAYFQYGHPIYSSKAVRFRMGHSKLPHGSDSFVTVEDENLMAIADENYVWTYTSPEFPMLQENVLQSFKLPRPVLCIGGIVKVELLGRVQKQEADDRYYICICHAQVRGRSLSPVFMVDTSDPAGYSVLKYLPDAKILRSEDAMLDDGSESLEWHSLVARYRRMRHLAIMNVLLGPEEFMDEDDIIGGVLMDEDDLGGMLEDDPFV*