Information report for qLTG3-1
Gene Details
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Functional Descriptions
- Previously, qLTG3-1, a major quantitative trait locus controlling low-temperature tolerance at the germination stage in rice (called low-temperature germinability) was identified, which encodes a protein of unknown function.
- In particular, genes involved in defense responses were up-regulated by qLTG3-1, indicating that qLTG3-1 expression is required for the expression of defense response genes in low-temperature germinability in rice.
- Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice.
- Most of these genes might be involved in the process of seed germination itself, and then a focus was made on qLTG3-1 dependently induced or suppressed genes, defined as ‘qLTG3-1 dependent’ genes.
- Twenty-nine ‘qLTG3-1 dependent’ genes with diverse functions were categorized, implying that disruption of cellular homeostasis leads to a wide range of metabolic alterations and diverse cross-talk between various signaling pathways.
- The QTL qLTG3-1 is strongly expressed in the embryo during seed germination.
- To understand the molecular basis of one of these QTLs, qLTG3-1 (quantitative trait locus for low-temperature germinability on chromosome 3), map-based cloning was performed, and this QTL was shown to be encoded by a protein of unknown function.
- Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice.
- rufipogon qLTG3-1 allele can be utilized for the improvement of LTG in rice breeding programs.
Functional Keywords
Literature and News
- Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice . DOI: 10.1007/s11103-009-9559-x ; PMID: 19851874
- Molecular identification of a major quantitative trait locus, qLTG3–1, controlling low-temperature germinability in rice . DOI: 10.1073/pnas.0805303105 ; PMID: 18719107
- Characterization of a New qLTG3-1 Allele for Low-temperature Germinability in Rice from the Wild Species Oryza rufipogon . DOI: 10.1186/s12284-020-0370-2 ; PMID: 32025935
Sequences
cDNA Sequence
- >LOC_Os03g01320.2
GTATCTGAATACACTGGCTAGCAAGCAAAGCTAGGTAGAGGCCAGGCCATAGATCGAGATCGATCTGCAGGTGCAGTGCGGTGGGTGGGCATGGCGACGAAAGCTGGGGTGATCGCCACGCTCCTGGCCCTGAACCTCCACTTCTTCACCTTCTCCGACGCGTGCGGCTGCCAGTGCGGCTCATGCCCTAGTCCCGGCGGAGGAGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTGGAGGGCGTGGAGGTGGTGGCGGGAGCGGCGGAGGTTCAGGTGGAGGCGGCGGTTCAGGTGGAGGAGGAAGCGGCGGCGGAGGTTCAGCCGTGTTGCAGCCTCATCCAGGGCCTCGCCGACCTTGAGGCCGCCGTGTGCCTCTGCACCGCCCTCCGCGCCAACATCCTTGGCATCAACCTCAACCTCCCCATCAACCTCAGCCTCCTCGTCAACTACTGCGGCCGCTCCGTCCCCTCCGGCTTCCAGTGCAGCAACTAATATAGCTGCTGCTCCATTCTACTTCACTGCTTGCTACACACAAGAACGTACGAAGAACGACCACCAGGCCACGTACAACTATATATCTATCTATGTCTAATTTGTTCCTTGTTCAAATCATCATATGTATCTGCGTGCCTTAATTTCCTCCTTCATCCCGTAAATTAATGAGATATATATGCATGCATATGATTCAGTTCCACGACGTAATTAAAGCATGCTTCATTCGTCTACTTGTATATGTGTATCTGCATAATTGATTAATTAATTTGTACTCGATGGATCTCATCGTATATGCATCAGTACGTACTGCATCTCGTCTTTTCTGCATGCCTGTTAATTCTACACATACTGTACTAGCTAGCTCTTGTTCGATCCATCGGTCCCAATCGTTTGTACTAGCTACGTACTGTCTTGTTCAATTGTTCCTCTCTCTCTCTCTAAAATAA - >LOC_Os03g01320.1
GTATCTGAATACACTGGCTAGCAAGCAAAGCTAGGTAGAGGCCAGGCCATAGATCGAGATCGATCTGCAGGTGCAGTGCGGTGGGTGGGCATGGCGACGAAAGCTGGGGTGATCGCCACGCTCCTGGCCCTGAACCTCCACTTCTTCACCTTCTCCGACGCGTGCGGCTGCCAGTGCGGCTCATGCCCTAGTCCCGGCGGAGGAGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTGGAGGGCGTGGAGGTGGTGGCGGGAGCGGCGGAGGTTCAGGTGGAGGCGGCGGTTCAGGTGGAGGAGGAAGCGGCGGCGGAGGTTCAGCCGTGTTGCAGCCTCATCCAGGGCCTCGCCGACCTTGAGGCCGCCGTGTGCCTCTGCACCGCCCTCCGCGCCAACATCCTTGGCATCAACCTCAACCTCCCCATCAACCTCAGCCTCCTCGTCAACTACTGCGGCCGCTCCGTCCCCTCCGGCTTCCAGTGCAGCAACTAATATAGCTGCTGCTCCATTCTACTTCACTGCTTGCTACACACAAGAACGTACGAAGAACGACCACCAGGCCACGTACAACTATATATCTATCTATGTCTAATTTGTTCCTTGTTCAAATCATCATATGTATCTGCGTGCCTTAATTTCCTCCTTCATCCCGTAAATTAATGAGATATATATGCATGCATATGATTCAGTTCCACGACGTAATTAAAGCATGCTTCATTCGTCTACTTGTATATGTGTATCTGCATAATTGATTAATTAATTTGTACTCGATGGATCTCATCGTATATGCATCAGTACGTACTGCATCTCGTCTTTTCTGCATGCCTGTTAATTCTACACATACTGTACTAGCTAGCTCTTGTTCGATCCATCGGTCCCAATCGTTTGTACTAGCTACGTACTGTCTTGTTCAATTGTTCCTCTCTCTCTCTCTAAAATAA
CDS Sequence
- >LOC_Os03g01320.2
ATGGCGACGAAAGCTGGGGTGATCGCCACGCTCCTGGCCCTGAACCTCCACTTCTTCACCTTCTCCGACGCGTGCGGCTGCCAGTGCGGCTCATGCCCTAGTCCCGGCGGAGGAGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTGGAGGGCGTGGAGGTGGTGGCGGGAGCGGCGGAGGTTCAGGTGGAGGCGGCGGTTCAGGTGGAGGAGGAAGCGGCGGCGGAGGTTCAGCCGTGTTGCAGCCTCATCCAGGGCCTCGCCGACCTTGA - >LOC_Os03g01320.1
ATGGCGACGAAAGCTGGGGTGATCGCCACGCTCCTGGCCCTGAACCTCCACTTCTTCACCTTCTCCGACGCGTGCGGCTGCCAGTGCGGCTCATGCCCTAGTCCCGGCGGAGGAGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTGGAGGGCGTGGAGGTGGTGGCGGGAGCGGCGGAGGTTCAGGTGGAGGCGGCGGTTCAGGTGGAGGAGGAAGCGGCGGCGGAGGTTCAGCCGTGTTGCAGCCTCATCCAGGGCCTCGCCGACCTTGA
Protein Sequence
- >LOC_Os03g01320.2
MATKAGVIATLLALNLHFFTFSDACGCQCGSCPSPGGGGGGGGGGGGGGGGRGGGGGSGGGSGGGGGSGGGGSGGGGSAVLQPHPGPRRP* - >LOC_Os03g01320.1
MATKAGVIATLLALNLHFFTFSDACGCQCGSCPSPGGGGGGGGGGGGGGGGRGGGGGSGGGSGGGGGSGGGGSGGGGSAVLQPHPGPRRP*