Gene Details:
- MSU gene ID: LOC_Os03g01222
- RAPdb gene ID: Os03g0102100
- Gene Symbol: HPA1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- In a further feeding assay with exogenous glutathione (GSH), a non-enzymatic antioxidant that consumes H2O2, the H2O2 accumulation and leaf senescence phenotypes of HPA1 were obviously compensated.
- Taken together, our findings suggest that the accumulation of H2O2 in HPA1 may be mediated by an altered folate status and redox homeostasis, subsequently triggering leaf senescence.
- Proteomics and enzyme activity analyses further revealed that mitochondria oxidative phosphorylation complex I and complex V were differentially expressed in HPA1, which was consistent with the H2O2 accumulation in HPA1.
- Map-based cloning revealed that HPA1 encodes a tetrahydrofolate deformylase, and its deficiency led to the accumulation of tetrahydrofolate, 5-formyl tetrahydrofolate and 10-formyl tetrahydrofolate, in contrast, a decrease in 5,10-methenyl-tetrahydrofolate.
Function-related keywords:
- leaf , leaf-senescence , senescence , mitochondria , map-based-cloning , oxidative , redox-homeostasis
Literature:
- Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice . DOI: 10.1007/s11427-020-1773-7 ; PMID: 32949368
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os03g01222.1
GAGGGGATGGATACTACTCATACATCCATCCTTCTCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGTAGTAATTGGTATG - >LOC_Os03g01222.4
GAGGGGATGGATACTACTCATACATCCATCCTTCTCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGTAGTAATTGGTATG - >LOC_Os03g01222.3
GAGGGGATGGATACTACTCATACATCCATCCTTCTCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGTAGTAATTGGTATG - >LOC_Os03g01222.2
GAGGGGATGGATACTACTCATACATCCATCCTTCTCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGTAGTAATTGGTATG
CDS Sequence
- >LOC_Os03g01222.1
ATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGA - >LOC_Os03g01222.4
ATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGA - >LOC_Os03g01222.3
ATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGA - >LOC_Os03g01222.2
ATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGA
Protein Sequence
- >LOC_Os03g01222.1
MLSVARRPLSAAVPVGNLLGIHLFQCPDTVGIVARLSECIASRGGNIHSVDVFVPDDKPVFYSRSEFTYNPMLWPRDVLRTDFLNLSQHFSAQRSTVRVPDLDPKYKISVLASKQDHCLFDLLYRWQEGRLPVDINCVISNHDRLKDNHVRRFLERHGIPYHYLPTSPGNKREQEILELVQGTDFVVLARYMQILSEGFLKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF* - >LOC_Os03g01222.4
MLSVARRPLSAAVPVGNLLGIHLFQCPDTVGIVARLSECIASRGGNIHSVDVFVPDDKPVFYSRSEFTYNPMLWPRDVLRTDFLNLSQHFSAQRSTVRVPDLDPKYKISVLASKQDHCLFDLLYRWQEGRLPVDINCVISNHDRLKDNHVRRFLERHGIPYHYLPTSPGNKREQEILELVQGTDFVVLARYMQILSEGFLKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF* - >LOC_Os03g01222.3
MLSVARRPLSAAVPVGNLLGIHLFQCPDTVGIVARLSECIASRGGNIHSVDVFVPDDKPVFYSRSEFTYNPMLWPRDVLRTDFLNLSQHFSAQRSTVRVPDLDPKYKISVLASKQDHCLFDLLYRWQEGRLPVDINCVISNHDRLKDNHVRRFLERHGIPYHYLPTSPGNKREQEILELVQGTDFVVLARYMQILSEGFLKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF* - >LOC_Os03g01222.2
MLSVARRPLSAAVPVGNLLGIHLFQCPDTVGIVARLSECIASRGGNIHSVDVFVPDDKPVFYSRSEFTYNPMLWPRDVLRTDFLNLSQHFSAQRSTVRVPDLDPKYKISVLASKQDHCLFDLLYRWQEGRLPVDINCVISNHDRLKDNHVRRFLERHGIPYHYLPTSPGNKREQEILELVQGTDFVVLARYMQILSEGFLKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF*