Information report for RTBP1
Gene Details
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Functional Descriptions
- RTBP1 plants displayed progressive and severe developmental abnormalities in both germination and postgermination growth of vegetative organs over four generations (G1 to G4).
- Furthermore, 35S:anti-RTBP1 plants expressing lower levels of RTBP1 mRNA exhibited developmental phenotypes intermediate between the wild type and mutants in all aspects examined, including telomere length, vegetative and reproductive growth, and degree of genomic anomaly.
- These results suggest that RTBP1 plays dual roles in rice (Oryza sativa), as both a negative regulator of telomere length and one of positive and functional components for proper architecture of telomeres.
Functional Keywords
Literature and News
- Solution structure of the DNA binding domain of rice telomere binding protein RTBP1 . DOI: 10.1021/bi801270g ; PMID: 19152316
- Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice . DOI: 10.1105/tpc.107.051953 ; PMID: 17586654
Gene Resources
- UniProt: Q9LL45
- EMBL: AF242298, AP004028, AP004048
- AlphaFoldDB: Q9LL45
- EnsemblPlants: Os02t0817800-03
- Gramene: Os02t0817800-03
- KEGG: dosa:Os02g0817800
- InterPro: IPR000626, IPR001005, IPR009057
- PANTHER: PTHR21717, PTHR21717:SF72
- SUPFAM: SSF46689, SSF54236
- PROSITE: PS50053, PS51294
- Gene3D: 1.10.246.220, 3.10.20.90
- OrthoDB: Q9LL45
- SWISS-MODEL: Q9LL45
- Conserved Domain Database: cd11660, cd17039
- eggNOG: ENOG502QPSZ
Sequences
cDNA Sequence
- >LOC_Os02g57270.1
ACGGGGTTTTTCTCCTCCAATCCTTTCCCCTCTCCCTCTCCTCCTCCTCCTCCTCCCTGCGCCTTCCACTTGCAGCGATTCCTCCTCCCCGCCCGCTCTTCTCGAACCTTCTGGAACCTTCCCCCATCCCCCACAAGCAGAAGCAGCAGATGGGCATCGTCGTCGTCGTCGTCAACCAATCCTAGGCGACGAGCGCTGCGGCGGCGCGCGCCATCTGCTCCCCTCCGCCGTGCTCCGGTGCTCCCCGATCTGCGCCTCCCGCTCCGGTTGGTCGGCTGTCGGAACACGCAGCTGCAAAACCCTAGCCGAGCTGCGGCGATCTCAACGCTGGCGGCGAGGCCCTCCTCTTCGTCGGCGTCGACGGAAAAATATGGCGCATGTTTTATTTACTTCCCCTTGCTGTCACTGAACACATTTCCTAAAGTCAAGGACAAGACATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGATCCTGATGATGATTGATGGAGAAGGCAAGAATGGCCCTCGTGTACAAATCGGTGTAAAAATTGTTCAGAAGGGATTGGTTGGTTGACGTTTGATTGAAATTTGTCGACAGTTGAAAACTCACAACTTGGTCCTTCCTACTGTTGGTTCGTTAACAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATTTGTAAATTTCAGCAGAGTTTACTGTCTTTGCAAAAATGCAAGTCGTTTTGGACAAG - >LOC_Os02g57270.2
ACGGGGTTTTTCTCCTCCAATCCTTTCCCCTCTCCCTCTCCTCCTCCTCCTCCTCCCTGCGCCTTCCACTTGCAGCGATTCCTCCTCCCCGCCCGCTCTTCTCGAACCTTCTGGAACCTTCCCCCATCCCCCACAAGCAGAAGCAGCAGATGGGCATCGTCGTCGTCGTCGTCAACCAATCCTAGGCGACGAGCGCTGCGGCGGCGCGCGCCATCTGCTCCCCTCCGCCGTGCTCCGGTGCTCCCCGATCTGCGCCTCCCGCTCCGGTTGGTCGGCTGTCGGAACACGCAGCTGCAAAACCCTAGCCGAGCTGCGGCGATCTCAACGCTGGCGGCGAGGCCCTCCTCTTCGTCGGCGTCGACGGAAAAATATGGCGCATGTTTTATTTACTTCCCCTTGCTGTCACTGAACACATTTCCTAAAGTCAAGGACAAGACATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGATCCTGATGATGATTGATGGAGAAGGCAAGAATGGCCCTCGTGTACAAATCGGTGTAAAAATTGTTCAGAAGGGATTGGTTGGTTGACGTTTGATTGAAATTTGTCGACAGTTGAAAACTCACAACTTGGTCCTTCCTACTGTTGGTTCGTTAACAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATTTGTAAATTTCAGCAGAGTTTACTGTCTTTGCAAAAATGCAAGTCGTTTTGGACAAG
CDS Sequence
- >LOC_Os02g57270.1
ATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGA - >LOC_Os02g57270.2
ATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGA
Protein Sequence
- >LOC_Os02g57270.1
MVLQKRLDYGSHGHRAPIKPRVATLAPVKRSTRIRKKQMYALDLLATAAEKLLADQDNLSSGPNINETPEGYVTSMKPVKAEQFDEAFPLRSVAVKKDDCKGCTVGCAGICGFLRQANMCLAENSSTQNLADSVLESLTAKPDVLAKDSFVSSKKSCRLGFGLGTIPEYGSVGVCQPWSTRSAEVKQVHRARPTAIRSQEDSDAAALCALVETMDLDTKPLAEASSGSNSGVHICGPDRGHNSHPSCLAKVQHAADRDDDENSSGCVHPSTSGNNRGYIPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRVQQTTLKRKRLAQLYSEKSSDEVKLTIKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEEMDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSEQQAKLHGDPPVPEICPT* - >LOC_Os02g57270.2
MVLQKRLDYGSHGHRAPIKPRVATLAPVKRSTRIRKKQMYALDLLATAAEKLLADQDNLSSGPNINETPEGYVTSMKPVKAEQFDEAFPLRSVAVKKDDCKGCTVGCAGICGFLRQANMCLAENSSTQNLADSVLESLTAKPDVLAKDSFVSSKKSCRLGFGLGTIPEYGSVGVCQPWSTRSAEVKQVHRARPTAIRSQEDSDAAALCALVETMDLDTKPLAEASSGSNSGVHICGPDRGHNSHPSCLAKVQHAADRDDDENSSGCVHPSTSGNNRGYIPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRVQQTTLKRKRLAQLYSEKSSDEVKLTIKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEEMDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSEQQAKLHGDPPVPEICPT*