Gene Details:
- MSU gene ID: LOC_Os02g57270
- RAPdb gene ID: Os02g0817800
- Gene Symbol: RTBP1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- RTBP1 plants displayed progressive and severe developmental abnormalities in both germination and postgermination growth of vegetative organs over four generations (G1 to G4).
- Furthermore, 35S:anti-RTBP1 plants expressing lower levels of RTBP1 mRNA exhibited developmental phenotypes intermediate between the wild type and mutants in all aspects examined, including telomere length, vegetative and reproductive growth, and degree of genomic anomaly.
- These results suggest that RTBP1 plays dual roles in rice (Oryza sativa), as both a negative regulator of telomere length and one of positive and functional components for proper architecture of telomeres.
Function-related keywords:
Literature:
- Solution structure of the DNA binding domain of rice telomere binding protein RTBP1 . DOI: 10.1021/bi801270g ; PMID: 19152316
- Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice . DOI: 10.1105/tpc.107.051953 ; PMID: 17586654
Related News:
Gene Resources:
- NCBI ID: AF242298
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os02g57270.1
ACGGGGTTTTTCTCCTCCAATCCTTTCCCCTCTCCCTCTCCTCCTCCTCCTCCTCCCTGCGCCTTCCACTTGCAGCGATTCCTCCTCCCCGCCCGCTCTTCTCGAACCTTCTGGAACCTTCCCCCATCCCCCACAAGCAGAAGCAGCAGATGGGCATCGTCGTCGTCGTCGTCAACCAATCCTAGGCGACGAGCGCTGCGGCGGCGCGCGCCATCTGCTCCCCTCCGCCGTGCTCCGGTGCTCCCCGATCTGCGCCTCCCGCTCCGGTTGGTCGGCTGTCGGAACACGCAGCTGCAAAACCCTAGCCGAGCTGCGGCGATCTCAACGCTGGCGGCGAGGCCCTCCTCTTCGTCGGCGTCGACGGAAAAATATGGCGCATGTTTTATTTACTTCCCCTTGCTGTCACTGAACACATTTCCTAAAGTCAAGGACAAGACATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGATCCTGATGATGATTGATGGAGAAGGCAAGAATGGCCCTCGTGTACAAATCGGTGTAAAAATTGTTCAGAAGGGATTGGTTGGTTGACGTTTGATTGAAATTTGTCGACAGTTGAAAACTCACAACTTGGTCCTTCCTACTGTTGGTTCGTTAACAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATTTGTAAATTTCAGCAGAGTTTACTGTCTTTGCAAAAATGCAAGTCGTTTTGGACAAG - >LOC_Os02g57270.2
ACGGGGTTTTTCTCCTCCAATCCTTTCCCCTCTCCCTCTCCTCCTCCTCCTCCTCCCTGCGCCTTCCACTTGCAGCGATTCCTCCTCCCCGCCCGCTCTTCTCGAACCTTCTGGAACCTTCCCCCATCCCCCACAAGCAGAAGCAGCAGATGGGCATCGTCGTCGTCGTCGTCAACCAATCCTAGGCGACGAGCGCTGCGGCGGCGCGCGCCATCTGCTCCCCTCCGCCGTGCTCCGGTGCTCCCCGATCTGCGCCTCCCGCTCCGGTTGGTCGGCTGTCGGAACACGCAGCTGCAAAACCCTAGCCGAGCTGCGGCGATCTCAACGCTGGCGGCGAGGCCCTCCTCTTCGTCGGCGTCGACGGAAAAATATGGCGCATGTTTTATTTACTTCCCCTTGCTGTCACTGAACACATTTCCTAAAGTCAAGGACAAGACATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGATCCTGATGATGATTGATGGAGAAGGCAAGAATGGCCCTCGTGTACAAATCGGTGTAAAAATTGTTCAGAAGGGATTGGTTGGTTGACGTTTGATTGAAATTTGTCGACAGTTGAAAACTCACAACTTGGTCCTTCCTACTGTTGGTTCGTTAACAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATTTGTAAATTTCAGCAGAGTTTACTGTCTTTGCAAAAATGCAAGTCGTTTTGGACAAG
CDS Sequence
- >LOC_Os02g57270.1
ATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGA - >LOC_Os02g57270.2
ATGGTGTTGCAGAAGAGGTTGGACTATGGATCCCATGGCCATCGTGCTCCCATTAAGCCACGTGTCGCAACATTGGCGCCGGTTAAACGCTCCACAAGAATAAGGAAAAAGCAGATGTATGCACTTGATTTGCTTGCGACAGCTGCAGAAAAATTGTTGGCTGATCAAGACAATTTATCTAGTGGACCTAACATAAATGAAACACCAGAAGGTTATGTTACAAGCATGAAACCAGTTAAAGCAGAACAGTTTGATGAAGCGTTTCCGTTGAGAAGCGTGGCTGTGAAAAAAGATGACTGCAAAGGTTGTACAGTAGGCTGTGCAGGCATCTGTGGCTTTCTCAGACAAGCTAATATGTGCTTGGCTGAAAACTCGTCGACTCAAAATCTAGCTGATTCAGTACTAGAGTCACTAACAGCAAAGCCTGATGTGTTGGCTAAGGACTCATTTGTTAGCAGTAAAAAATCATGTCGATTGGGTTTTGGTCTTGGCACAATTCCGGAGTATGGATCTGTTGGAGTATGCCAACCTTGGTCCACAAGATCAGCAGAGGTTAAACAAGTGCATCGGGCGAGACCAACAGCAATCAGAAGTCAAGAAGATAGTGATGCTGCAGCTCTATGTGCTTTGGTCGAGACCATGGATTTGGACACCAAACCTCTTGCTGAGGCTAGCTCTGGTAGTAACTCAGGAGTGCACATCTGCGGCCCTGACAGGGGGCATAACTCCCATCCCTCGTGTTTGGCTAAAGTGCAGCATGCTGCAGACAGAGATGATGACGAAAATTCTTCTGGGTGTGTACATCCAAGCACCTCAGGAAATAACCGTGGTTATATTCCACATTATATAGGTGACCGCAGGATAAGGAGATTGTTTGCCTCCAGGTTAAGGAAGGCAGCTCGCAACAGGATATGTGGAGAGATGTCTTGTAAAGGTAACAAGCTGAGTTTGTGTGAAAAGAAGATGCCCACTACGCGCCGAAGAGTGCAACAAACAACTTTGAAGAGGAAAAGACTTGCTCAACTTTACTCCGAAAAATCATCTGATGAAGTCAAGTTAACCATCAAATCTTTCAACATCCCTGAACTACTAATTGAGATCCCTGAAAATGCAACAGTTGGTTCATTGAAGAAAACTGTGTCAGATGCTGTTACTACTATAATTGAACGCGGTCTCCGTGTCGGTATACTTCTTCAAGGAAAAAATATTCAAAATGACAACAAGACGCTTCGTCAGGCTGGGATTTGCCGTGGTAAAAAACTAAATGACATAGGCTTTACTCTGGAATGTGAAGCTGGGCAAGATTCTCACCCTGGTGTAATAGTGCCAGAAGAAATGGATTTTGTTGGTGCATCTGTTGTGGACAAGTCTGCTACGGTGAAATGCGAAGAACCTGCTGAGAACCAGCAGCTTATGCAAGATTTTCCAGGCTGCAGCTTGAGTGATCCTGGTTCTGTTGATTATCCCGTGGAATGGAGCACACAAGAAACATCAGCAAGCTCCCAAGCCATCGTCCCTTTTGCAGATCCAAACTCACTGGCGCTGGCCAATGTGCCGCTTTCTAGGTCAAAGCGACCAGATTTTGGGCAAAGACGGATAAGGAGGCCTTTCACTGTTGCTGAAGTGGAGTTGCTGGTGGAAGCCGTCGAGCACCTTGGAACAGGAAGGTGGAGGGACGTCAAATTCCGCGCATTTGAAAATGTTCATCATAGGACCTATGTTGATCTGAAGGACAAGTGGAAGACCCTGGTGCACACGGCGAGCATAGCGCCGCAGCAAAGAAGGGGAGCTCCAGTTCCACAGGAACTCCTGGACCGTGTGCTCGCCGCACAGGCCTACTGGTCGGAGCAGCAGGCAAAGCTCCATGGCGATCCCCCTGTTCCTGAAATCTGCCCTACCTGA
Protein Sequence
- >LOC_Os02g57270.1
MVLQKRLDYGSHGHRAPIKPRVATLAPVKRSTRIRKKQMYALDLLATAAEKLLADQDNLSSGPNINETPEGYVTSMKPVKAEQFDEAFPLRSVAVKKDDCKGCTVGCAGICGFLRQANMCLAENSSTQNLADSVLESLTAKPDVLAKDSFVSSKKSCRLGFGLGTIPEYGSVGVCQPWSTRSAEVKQVHRARPTAIRSQEDSDAAALCALVETMDLDTKPLAEASSGSNSGVHICGPDRGHNSHPSCLAKVQHAADRDDDENSSGCVHPSTSGNNRGYIPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRVQQTTLKRKRLAQLYSEKSSDEVKLTIKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEEMDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSEQQAKLHGDPPVPEICPT* - >LOC_Os02g57270.2
MVLQKRLDYGSHGHRAPIKPRVATLAPVKRSTRIRKKQMYALDLLATAAEKLLADQDNLSSGPNINETPEGYVTSMKPVKAEQFDEAFPLRSVAVKKDDCKGCTVGCAGICGFLRQANMCLAENSSTQNLADSVLESLTAKPDVLAKDSFVSSKKSCRLGFGLGTIPEYGSVGVCQPWSTRSAEVKQVHRARPTAIRSQEDSDAAALCALVETMDLDTKPLAEASSGSNSGVHICGPDRGHNSHPSCLAKVQHAADRDDDENSSGCVHPSTSGNNRGYIPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRVQQTTLKRKRLAQLYSEKSSDEVKLTIKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIERGLRVGILLQGKNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEEMDFVGASVVDKSATVKCEEPAENQQLMQDFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSEQQAKLHGDPPVPEICPT*