Information report for OsRPA1a
Gene Details
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Functional Descriptions
- Compared with wild type, the OsRPA1a mutant showed no visible defects in mitosis and chromosome pairing and synapsis during meiosis.
- The OsRPA1a mutants had a normal phenotype during vegetative growth but were sterile at the reproductive stage.
Functional Keywords
- meiosis , sterile , growth , vegetative , mitosis , reproductive
Literature and News
- Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but is dispensable for DNA replication and homologous recombination in rice . DOI: 10.1104/pp.109.142877 ; PMID: 19812186
- CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice . DOI: 10.1007/s11103-020-01004-z ; PMID: 32266647
Gene Resources
- UniProt: Q6YZ49
- EMBL: AB042415, AK072308, AK101212
- AlphaFoldDB: Q6YZ49
- EnsemblPlants: Os02t0776800-01, Os02t0776800-02
- Gramene: Os02t0776800-01, Os02t0776800-02
- KEGG: dosa:Os02g0776800
- Orthologous matrix: DQCDAFY
- InterPro: IPR004365, IPR004591, IPR007199
- PANTHER: PTHR23273, PTHR23273:SF47
- SUPFAM: SSF50249
- Gene3D: 2.40.50.140
- OrthoDB: Q6YZ49
- SWISS-MODEL: Q6YZ49
- Conserved Domain Database: cd04474, cd04475, cd04476
- eggNOG: KOG0851
Sequences
cDNA Sequence
- >LOC_Os02g53680.1
ATCAACCGCCTCTCTCATTAATTAGCGGACCATTTCTAATTCACCCCTCGCATCTTTTCGAATTTTCGAGAGCTCAAAGCCTCGAACCATTCCCTTCTTCCTCGTCCCAATCCAAGTTCCAACCATCCAGGGCGGGGGTTTTCCCGTTAATCCGCGCCTCTCCGTGTCGGATTGAATTGAAGCGGAGAGGGGGAGGAGGAGGTGGAGGTGGAGGTGGAGGAGGGCGGCGGGTGGCGATGGCGATGGCGAGGCTGACGCCGAACGGCGTGGCGGCGGCGCTGGCGGGGGACACGAACCTGAAGCCGGTGCTGCAGATCGTCGAGCTGCGGGGCGTCCAGGTCAACGGCGCGGGCGTCACGCGCGGGGAGAGGTTCCGGGCGGTGGTCTCCGACGGCACCGCCGCGTCCTCCGCGCTCTTCGCCGCGCAGCTCAGCGACCACGCCCGATCCGGCGCCCTCCGACGCGGCAGCATTGTGCAGCTCAGCGAGTACGTCATCAACGAAGTCGGCCCCAGAAGGATTATTGTCATTCTGAACCTGGAAGTTCTTGTTTCGGAGTGTGAGATAATTGGGAATCCTACAGCGCTTTCAGAAACTGGATCTCCTATCCCAAATCCGACAAGAGTAGAGCAATTTAACGGAGCACCTCAATATGGTTTGATGGCAGGGAACTCATCAAATACAACCACAAAGCCTAGTGACAATGTTCCATTGTTCCAAAATTCGATGGCAGGAAACTCCTCTAACTTTGCCACTAGGCCCAGTGACAAAGTTCCGGTCTTCCAACCAACAGTCCAGCCATCTTATCGCCCTGCACCTAATTACAAAAACCATGGAGCAATCATGAAAAATGAAGCCCCTGCTAGAATAATCCCCATATCTGCTTTAAATCCTTATCAAGGCCGCTGGGCTATCAAGGCTAGAGTTACTGCCAAGGGAGATATCCGCCGATACCATAATGCTAAAGGTGATGGGAAAGTATTCTCTTTTGACTTGCTTGATTCTGATGGGGGAGAGATACGGGTGACATGCTTCAATGCTCTTCTTGATCGATTCTATGAAGTTGTGGAAGTTGGTAAGGTCTATGTGGTATCAAGAGGAAACTTGAGACCTGCACAGAAGAACTATAACCATCTTAACAATGAGTGGGAGATTTTATTGGAGAATGGATCAACTGTGGATCTTTGTCCTGATGAGAACAGTTCCATTCCCACCCAGCGGTTTGACTTCAGACCGATCAATGAAATTGAGGATGCCCAGAACAATGCTATCCTTGACATCATAGGTGTTGTTACATCGGTCAATCCTTGCACCACAATACAGAGGAAAAATGGCATGGAAACTCAGAAAAGAACTATGAACCTGAAGGATATGTCTGGTCGAAGTGTTGAGGTAACCATGTGGGGTGACTTTTGCAACAGAGAAGGCTCACAGCTTCAAGGAATGGTTGAACGTGGGATCTTTCCTGTGCTGGCTGTCAAAGCAGGAAAAGTGAGTGATTTCAGTGGCAAGTCTGTCGGCACAATTTCTTCAACTCAGCTCTTCATCAACCCTGATTCTGCTGAAGCTCATAGTCTCAGGCAATGGTTTGATAGTGGAGGAAGAGATGCTTCTACTCAGTCCATATCCAGAGATATCACGCCTGGAGCATCAAGGAATGAGATCCGAAAGACAGTAGCACAGATCAAGGATGAAGGTCTTGGAATGGGGGACAAACCTGACTGGATTACGGTGAAAGCCACCGTTATATTCTTCAAGAATGAGTCCTTCTTCTACACAGCTTGCCCTAACATGATTGGCGACAGGCAGTGCAATAAGAAGGTGACAAAGAGTACTAATGGCAATTGGACCTGTGACAAATGCGATAGGGAGTTTGAAGAGTGCGACTACAGGTATCTCCTGCAGTTTCAGATTCAAGATCACTCGGGAACAGCTTGGGTGACAGCATTCCAGGAGGCTGGGCAGGAGTTGCTTGGCTGCTCGGCAACAGAGCTCAACGCACTTAAGGAGCGCGAGGACCCTCGGTTTGCAGACACCATGCTCAATTGCTTGTTTCAGGAATATCTGCTCAGGCTGAAGGTCAAAGAAGAATCATACGGCGATGAGCGCAAAGTGAAGAACACCGCGGTCAAAGTGGAGAAGGTTGATCCTTCGGGTGAAAGTAAATTTCTGCTGGATTTGATCTCCAAGTCCTCGGCGCTACATTAGCAGACTGTGCTACTCTATCAGCTGCTCGCTCGTGCGTGGTGAGGTGAGCGAGGTGAGGTGTTGCAGTGCCCATAGCCCTCGCCCTCCTGCTCGATTTTTGTGCCGGTACTTTAATATTAACGCCACTTAATAGTTTATATCCAGATTAGTGCTTTAATAGTTTATATCCAGATTAGTGCTGATATTTCCATTTTTGTGCCGGTACTTTAATATTAACGCCACTTAATGTATCAGCTTTTATACCTTTTTCTCGATCAAATGATTGCCTTCTAGCTGCAGTGCAATTTCTCCCTTAGTTTTGGTTTGTACATGCCTGCAAAGCCTTACTCTGTCGCGACTAAGAAATCTCTTGTGCTCTTCCATGCAATCGAACATCTGTTTTAC
CDS Sequence
- >LOC_Os02g53680.1
ATGGCGATGGCGAGGCTGACGCCGAACGGCGTGGCGGCGGCGCTGGCGGGGGACACGAACCTGAAGCCGGTGCTGCAGATCGTCGAGCTGCGGGGCGTCCAGGTCAACGGCGCGGGCGTCACGCGCGGGGAGAGGTTCCGGGCGGTGGTCTCCGACGGCACCGCCGCGTCCTCCGCGCTCTTCGCCGCGCAGCTCAGCGACCACGCCCGATCCGGCGCCCTCCGACGCGGCAGCATTGTGCAGCTCAGCGAGTACGTCATCAACGAAGTCGGCCCCAGAAGGATTATTGTCATTCTGAACCTGGAAGTTCTTGTTTCGGAGTGTGAGATAATTGGGAATCCTACAGCGCTTTCAGAAACTGGATCTCCTATCCCAAATCCGACAAGAGTAGAGCAATTTAACGGAGCACCTCAATATGGTTTGATGGCAGGGAACTCATCAAATACAACCACAAAGCCTAGTGACAATGTTCCATTGTTCCAAAATTCGATGGCAGGAAACTCCTCTAACTTTGCCACTAGGCCCAGTGACAAAGTTCCGGTCTTCCAACCAACAGTCCAGCCATCTTATCGCCCTGCACCTAATTACAAAAACCATGGAGCAATCATGAAAAATGAAGCCCCTGCTAGAATAATCCCCATATCTGCTTTAAATCCTTATCAAGGCCGCTGGGCTATCAAGGCTAGAGTTACTGCCAAGGGAGATATCCGCCGATACCATAATGCTAAAGGTGATGGGAAAGTATTCTCTTTTGACTTGCTTGATTCTGATGGGGGAGAGATACGGGTGACATGCTTCAATGCTCTTCTTGATCGATTCTATGAAGTTGTGGAAGTTGGTAAGGTCTATGTGGTATCAAGAGGAAACTTGAGACCTGCACAGAAGAACTATAACCATCTTAACAATGAGTGGGAGATTTTATTGGAGAATGGATCAACTGTGGATCTTTGTCCTGATGAGAACAGTTCCATTCCCACCCAGCGGTTTGACTTCAGACCGATCAATGAAATTGAGGATGCCCAGAACAATGCTATCCTTGACATCATAGGTGTTGTTACATCGGTCAATCCTTGCACCACAATACAGAGGAAAAATGGCATGGAAACTCAGAAAAGAACTATGAACCTGAAGGATATGTCTGGTCGAAGTGTTGAGGTAACCATGTGGGGTGACTTTTGCAACAGAGAAGGCTCACAGCTTCAAGGAATGGTTGAACGTGGGATCTTTCCTGTGCTGGCTGTCAAAGCAGGAAAAGTGAGTGATTTCAGTGGCAAGTCTGTCGGCACAATTTCTTCAACTCAGCTCTTCATCAACCCTGATTCTGCTGAAGCTCATAGTCTCAGGCAATGGTTTGATAGTGGAGGAAGAGATGCTTCTACTCAGTCCATATCCAGAGATATCACGCCTGGAGCATCAAGGAATGAGATCCGAAAGACAGTAGCACAGATCAAGGATGAAGGTCTTGGAATGGGGGACAAACCTGACTGGATTACGGTGAAAGCCACCGTTATATTCTTCAAGAATGAGTCCTTCTTCTACACAGCTTGCCCTAACATGATTGGCGACAGGCAGTGCAATAAGAAGGTGACAAAGAGTACTAATGGCAATTGGACCTGTGACAAATGCGATAGGGAGTTTGAAGAGTGCGACTACAGGTATCTCCTGCAGTTTCAGATTCAAGATCACTCGGGAACAGCTTGGGTGACAGCATTCCAGGAGGCTGGGCAGGAGTTGCTTGGCTGCTCGGCAACAGAGCTCAACGCACTTAAGGAGCGCGAGGACCCTCGGTTTGCAGACACCATGCTCAATTGCTTGTTTCAGGAATATCTGCTCAGGCTGAAGGTCAAAGAAGAATCATACGGCGATGAGCGCAAAGTGAAGAACACCGCGGTCAAAGTGGAGAAGGTTGATCCTTCGGGTGAAAGTAAATTTCTGCTGGATTTGATCTCCAAGTCCTCGGCGCTACATTAG
Protein Sequence
- >LOC_Os02g53680.1
MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLDLISKSSALH*