Gene Details:
- MSU gene ID: LOC_Os02g50330
- RAPdb gene ID: Os02g0736200
- Gene Symbol: OsRDR1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Expression of miR444 is enhanced by infection of Rice stripe virus (RSV) and overexpression of miR444 improves rice resistance against RSV infection accompanied by upregulation of OsRDR1 expression.
- We also show that overexpression of miR444-resistant OsMADS57 reduced OsRDR1 expression and rice resistance against RSV infection and knockout of OsRDR1 reduced rice resistance against RSV infection.
Function-related keywords:
Literature:
- Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice . DOI: 10.1371/journal.pone.0055252 ; PMID: 23383126
- Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice . DOI: 10.1186/1471-2164-9-451 ; PMID: 18826656
- A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway . DOI: 10.1104/pp.15.01283 ; PMID: 26858364
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os02g50330.1
GTCCTCGAATCCCTCTGCTCACTACCGTCGCGCTCGCTTATATTGCGGGAGTCGGCGACGAAAACCACCGAGCACCCGTCGGCGCAGCAGCGGCGGAGCGAAGGGAAGGGAAGGGAAGCCGCGATCCAGCCGCCGTCGACTCGCCGCCCACGCAGTCGCCGCCGAGCCCCATCTCCGCCACTGCTCGTTGTGATATGCGCCATGGGTGTCAAGACTTTACAGGTATCAGGGTTTGCTCTAGATGACAGTGCTGATTACGTCAAGGATTTGTTGGAGCGAATTGTTGGCTGTGGGAATGTGTATGCAGTAAAGCTCAGGCATCCAAAGAACGTCACTGCTACCTCAAGAGCATATGCTATAGTTCAGTTTCAGACCGAGGAACATGCTTCACTTGTAAAAAATGCGGCTCAAAGAAAGATACTCCGCCGTGGGCATTATTATCTGAAAGTCCATCCTTCAGATCGTGACATTGTTCCAAGACCAAGAGTTTCAATGTTCAAGCTAGAGGATGTAACACTGCATTTTGGTTGCCTGCTTAAGGAAACAATTTTATCTGCTCTGTGGAGTCGAAAAGGAGTTTCTGTTGAGTTTGGTTTCAATCTGAAAAAGATTTACTTTTACCTGCAGCTACCCAACAGCTCAATCGAATATAAACTTGAACTTTCCCATGAGAGCATATGGGAGATCCAGCTTCAACGCCCACCCAAGTCACAAACGAAGTTTCTTTTGATCCAGGTTCAAGCTGCACCTAAGATTTATGAACAGACACCACGCCGTTCTGGTGTTATGTACGAAGATCCATTATTCAACTATTTTAGGGATCATACAGATGATCAATGGACCAGGACAACGGATTTTACTTCATCTTCTAGCATTGGGCAATCATATATTTTATGTCTTGAGGTACCACGTCGATGTGATCTCCCAAACATTCGTGACTACTTCTTTTACTATCATGAGTACAATCATGACTTCGAGTGCCGGAGTGGGGGGTATCCATATTCAAGTGATACTCGCTTTGTTCCGATTGTGAAATCTCGTGGTTATGTCCCCTATGAGATACTCTTCAAGATCAACCATTTGGTTCAGAATGGGACACTTAGCGGACCGACAGTTGATGACAGCTTCTTTCGTCTGGTCAGCCCAGCTTTTGTACCTATTGACCATATAAAGCGTGCACTTGAAATGATGTCATATTTGAAAAAGACCTGCTTGAATCCAACAAGTTGGCTATCTGAACAATACTCAAAATTCCGGAGATCACGCTACGTCCAACCATCACCTAACATATCTCTGGATGATGGATTGGTTTATGTCTACAGTGTATTTTTATGGACCTGAGATTAATGTCTCCAATCGTGTGGTGCGGAATTTTTCTTCTGACATAGAGAATTTCCTTCGCATTTCATTTGTTGACGAGGACTGCGAGAAGCTCCGTGCAACTGATTTATCCCCCCGTTCTGCTTCAGGACATGATGCAAACAGAACTGCTCTGTATAAGAGAGTTCTGTCAGTCCTTTCAGATGGCATCACTATTGGTGGCAAGAACTTTGAGTTTCTTGCTTTTTCTTCAAGCCAGCTCCGAGATAACTCTGCATGGATGTTTGCTTCTCGCCAGGGATTAGCTGCTAGCGACATTAGGACATGGATGGGGGATTTCCGTAACATCAGAAATGTAGCAAAATATGCTGCAAGACTTGGTCAGTCTTTTAGTTCCTCAACCGAAACATTAAAGGTTCAGAAGTATGAGGTGGAAGAAATCTCAGATATAAAAAATGGTACACAGCATGTGTTCTCTGATGGGATTGGAAAGATATCATCTGCTTTTGCTAATGAAGTGGCCATGAAGTGCAACCTGAAACGCTTTGCTCCTTCTGCTTTTCAAATAAGGTATGGTGGTTATAAAGGTGTTGTTGCTGTTGACCCTACATCACGCTGGAAGCTTTCCTTAAGAAAAAGCATGCTAAAGTTTCAGTCAGACAATATCACAGTAGATGTCCTTGCATACAGCAAGTACCAGCCAGGCTTCCTTAATCGGCAGCTAATTACTCTTCTTTCGACACTTGGAGTTAGAGATAGTGTCTTTGAACAGAAGCAAGAAGAAGCAGTGAATCAGTTGAACAAAATGGTTACTGATCCTCAAGCTGCTATCGAAGCAATTGAACTTATGCCCATGGGAGAAATAACAAATGCAGTTAAAGAGCTGTTGTTGTGTGGCTACCAGCCTGATGATGAACCATATCTTTCTATGCTGCTACAAACTTTTAGGGCATCCAAATTACTAGAGCTGAAAACCAAGTCAAGGATATTAATCCCAAAAGGACGAGCAATGATGGGATGCTTGGATGAAACACGTACGCTGAAGTATGGGCAAGTGTTCATTCGAGCTACTTCGGGTGTAAATGACAATGACAGGTTCACCGTGACAGGAAAAGTTGTGATTGCCAAAAACCCTTGCCTCCACCCAGGTGATATACGGATTCTCCATGCTGTTGATGTTCCTGTTTTGCACCACATGTTTAACTGTGTCGTCTTTCCACAGCAAGGACCAAGGCCGCATCCTAATGAGTGTTCAGGGAGTGATCTTGACGGGGACATATATTTTGTTTCTTGGGACCCATCTCTCATTCCGCCTCGTATGGTGACACCTATGGACTATACTCCAGCACCAACAGAAACATTAGACCATGATGTTACAATTGAGGAAGTAGAAGAGTACTTCACAAATTACATAGTCAATGAGAGTTTAGGAATGATTGCCAATGCACATGTAGTATTTGCGGATAAGGAAGACCTCAAGGCAGAGAGTTCACCATGCATTGAGCTGGCCAAGCTCTTCTCCATTGCTGTTGACTTTCCCAAAACTGGAGTGCCAGCCCTGATTCCTCCTGAACTACATGTGAAGGAGTATCCTGATTTCATGGAGAAGCTTGACAAAGTCACCTATGAATCAAAAGGAGTAATCGGGAAGCTCTACAGGGAAATAAAGAAGCACACCCCTCACATAAAGCACTTCACAAGGGAGGTGGCAAGGCGGTCTTATGACACCGATATGATTGTTGATGGCTATGAAGATTACATCACTGAAGCTATGGCATTGAAGGACGAGTACGACTTCAAATTGGGTAATCTTATGGATCACTATGGAATAAAAAGTGAGGCCGAGATAATAAGTGGATGCATTCTTAAGATGGCAAAGAATTTCACAAAGAAAAGCGATGCTGATGCTATCAGATTGGCGGTGAGATCTTTGCGTAAGGAAGCAAGGTCAAGGTTCAGTGAGATGAGCTTAGATGATAATGGGCATGGCCATGATGCCTCCGAAGCCAAGGCATCCGCCTGGTACCATGTCACTTACCACCCTGAATTCTGGGGTTGCTACAATGAAGGATATGAGCGACCACACTTTATCAGCTTTCCATGGTGTATCTATGAGAAGCTTTTGCGCATTAAGCAAAGGAGGAAGTTCGTCAGGAAGATGCAGCCCGAGTTGTTCTCTCTCCACAACTTGAGAATTTGAGTGTGGCCAGCATGTTTGCTCTTATACATATATCTGAACTTTTGCATTGAACATGTCTATTCTGGTGCTTGAATGCTTACTG
CDS Sequence
- >LOC_Os02g50330.1
ATGATGGATTGGTTTATGTCTACAGTGTATTTTTATGGACCTGAGATTAATGTCTCCAATCGTGTGGTGCGGAATTTTTCTTCTGACATAGAGAATTTCCTTCGCATTTCATTTGTTGACGAGGACTGCGAGAAGCTCCGTGCAACTGATTTATCCCCCCGTTCTGCTTCAGGACATGATGCAAACAGAACTGCTCTGTATAAGAGAGTTCTGTCAGTCCTTTCAGATGGCATCACTATTGGTGGCAAGAACTTTGAGTTTCTTGCTTTTTCTTCAAGCCAGCTCCGAGATAACTCTGCATGGATGTTTGCTTCTCGCCAGGGATTAGCTGCTAGCGACATTAGGACATGGATGGGGGATTTCCGTAACATCAGAAATGTAGCAAAATATGCTGCAAGACTTGGTCAGTCTTTTAGTTCCTCAACCGAAACATTAAAGGTTCAGAAGTATGAGGTGGAAGAAATCTCAGATATAAAAAATGGTACACAGCATGTGTTCTCTGATGGGATTGGAAAGATATCATCTGCTTTTGCTAATGAAGTGGCCATGAAGTGCAACCTGAAACGCTTTGCTCCTTCTGCTTTTCAAATAAGGTATGGTGGTTATAAAGGTGTTGTTGCTGTTGACCCTACATCACGCTGGAAGCTTTCCTTAAGAAAAAGCATGCTAAAGTTTCAGTCAGACAATATCACAGTAGATGTCCTTGCATACAGCAAGTACCAGCCAGGCTTCCTTAATCGGCAGCTAATTACTCTTCTTTCGACACTTGGAGTTAGAGATAGTGTCTTTGAACAGAAGCAAGAAGAAGCAGTGAATCAGTTGAACAAAATGGTTACTGATCCTCAAGCTGCTATCGAAGCAATTGAACTTATGCCCATGGGAGAAATAACAAATGCAGTTAAAGAGCTGTTGTTGTGTGGCTACCAGCCTGATGATGAACCATATCTTTCTATGCTGCTACAAACTTTTAGGGCATCCAAATTACTAGAGCTGAAAACCAAGTCAAGGATATTAATCCCAAAAGGACGAGCAATGATGGGATGCTTGGATGAAACACGTACGCTGAAGTATGGGCAAGTGTTCATTCGAGCTACTTCGGGTGTAAATGACAATGACAGGTTCACCGTGACAGGAAAAGTTGTGATTGCCAAAAACCCTTGCCTCCACCCAGGTGATATACGGATTCTCCATGCTGTTGATGTTCCTGTTTTGCACCACATGTTTAACTGTGTCGTCTTTCCACAGCAAGGACCAAGGCCGCATCCTAATGAGTGTTCAGGGAGTGATCTTGACGGGGACATATATTTTGTTTCTTGGGACCCATCTCTCATTCCGCCTCGTATGGTGACACCTATGGACTATACTCCAGCACCAACAGAAACATTAGACCATGATGTTACAATTGAGGAAGTAGAAGAGTACTTCACAAATTACATAGTCAATGAGAGTTTAGGAATGATTGCCAATGCACATGTAGTATTTGCGGATAAGGAAGACCTCAAGGCAGAGAGTTCACCATGCATTGAGCTGGCCAAGCTCTTCTCCATTGCTGTTGACTTTCCCAAAACTGGAGTGCCAGCCCTGATTCCTCCTGAACTACATGTGAAGGAGTATCCTGATTTCATGGAGAAGCTTGACAAAGTCACCTATGAATCAAAAGGAGTAATCGGGAAGCTCTACAGGGAAATAAAGAAGCACACCCCTCACATAAAGCACTTCACAAGGGAGGTGGCAAGGCGGTCTTATGACACCGATATGATTGTTGATGGCTATGAAGATTACATCACTGAAGCTATGGCATTGAAGGACGAGTACGACTTCAAATTGGGTAATCTTATGGATCACTATGGAATAAAAAGTGAGGCCGAGATAATAAGTGGATGCATTCTTAAGATGGCAAAGAATTTCACAAAGAAAAGCGATGCTGATGCTATCAGATTGGCGGTGAGATCTTTGCGTAAGGAAGCAAGGTCAAGGTTCAGTGAGATGAGCTTAGATGATAATGGGCATGGCCATGATGCCTCCGAAGCCAAGGCATCCGCCTGGTACCATGTCACTTACCACCCTGAATTCTGGGGTTGCTACAATGAAGGATATGAGCGACCACACTTTATCAGCTTTCCATGGTGTATCTATGAGAAGCTTTTGCGCATTAAGCAAAGGAGGAAGTTCGTCAGGAAGATGCAGCCCGAGTTGTTCTCTCTCCACAACTTGAGAATTTGA
Protein Sequence
- >LOC_Os02g50330.1
MMDWFMSTVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREVARRSYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRIKQRRKFVRKMQPELFSLHNLRI*