Information report for YLC3
Gene Details
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Functional Descriptions
- The Rice Aspartyl-tRNA Synthetase YLC3 Regulates Amino Acid Homeostasis and Chloroplast Development Under Low Temperature.
- Moreover, uncharged tRNA-Asp accumulation and phosphorylation of the translation initiation factor eIF2α was detected in the mutant, suggesting that YLC3 regulates the homeostasis of amino acid metabolism and chloroplast thylakoid development through modulation of processes during protein synthesis.
- Map-based cloning identified that YLC3 encodes an aspartyl-tRNA synthetase which is localized in cytosol and mitochondria.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q6ZHC3
- EMBL: AK098984, AP014958
- AlphaFoldDB: Q6ZHC3
- EnsemblPlants: Os02t0686400-01, Os02t0686400-02
- Gramene: Os02t0686400-01, Os02t0686400-02
- KEGG: osa:4330354
- Orthologous matrix: WVHEIRD
- InterPro: IPR002312, IPR004364, IPR004523
- PANTHER: PTHR43450, PTHR43450:SF1
- SUPFAM: SSF50249, SSF55681
- PROSITE: PS50862
- Gene3D: 2.40.50.140, 3.30.930.10
- OrthoDB: Q6ZHC3
- SWISS-MODEL: Q6ZHC3
- Conserved Domain Database: cd00776, cd04320
- eggNOG: KOG0556
Sequences
cDNA Sequence
- >LOC_Os02g46130.1
TGGCCCCACATGTCATCCACTCGTGCTACGCAGCAGTTGAGCAATCGGTGATTAAAAAAAAATTCCACACCCAAACCCTAGCCCCGCACCGATCCCTCTCCCTCTCCCGCCGCCACCGCCTCCGCCTCCGCCTCCCCTCGCGCCGTCGCCGTCGCCAAGAGCCGCCACTTCCGCTTCCGCCTCTGCCTCGTCCAAGTCCAAGCCAACTACCTAAACCTAAACCCTATTCTTCTTCTTTCGCCTCCGCCGCGATGTCGTCGGAGCCTCCACCCGATGCCGCCGCCGCCGCCGCCTCCTCCGCGGGGGATCTCGCGGCCGATCTCTCCTCCGCCACCATCAGCAAGAAGCAGCTCAAGAAGGATGCGAGGAAGGCGGAGAAGGCCGAGAAGGCGTCGCAGCGCCAGCAGCAGCAGCAGCCGCAGGCCGACGCCGACGACCCCTTCGCGGCCAACTACGGCGACGTCCCCGTCGAGGAGATCCAGTCCAAGACCATCTCCGGCCGCGTGTGGACCGAGATCGGCGGCCTCGACGAGGCCGCCGCCGGCCGCTCCGTCCTCATCCGCGGCGCCGCGCAGGCGATCCGGCCCGTCAGCAAGAAGATGGCCTTCGTTGTGCTGCGCGAGAGCATGAGCACCGTCCAGTGCGTGCTCGTCGCCAGCGCCGACGCAGGGGTCAGCACCCAGATGGTGCGCTTCGCCACCTCCCTCAGCAAGGAATCAATCGTCGACGTCGAGGGCGTCGTCTCCCTCCCCAAGGAGCCCCTCAAGGCCACCACGCAGCAGGTGGAGATTCAGGTGAGGAAGATCTATTGCATCAATAGGGCGATCCCCACCCTTCCAATCAACCTTGAGGATGCCTCACGGAGTGAGGCTGAAATTGAAAAGGCTGAACAAGCTGGAGAGAAGCTAGTTCGTGTGGGCCAAGATACTCGCTTGAACTATAGAGCTATTGATCTCCGGACACCTGCAAATCAAGCAATATTCAGAATTCAATGTCAAGTTGAGAACAAATTCAGGGAATATTTTCTGTCGAAAAATTTTGTTGGGATTCACAGCCCAAAGCTAATTGCTGGATCCAGCGAAGGTGGTGCAGCTGTATTCAAGCTACAGTACAATGGACAGCCAGCATGTTTAGCACAGTCTCCTCAGTTGTATAAGCAGATGGCTATTTGTGGTGGGTTTGAACGTGTATTTGAGGTTGGACCTGTTTTTAGAGCTGAGAATTCAAACACTCACAGGCATCTGTGTGAGTTTGTTGGCCTTGATGCTGAGATGGAGATTAAGGAACATTATTTTGAGGTTTGCGACATAATAGATGGTTTGTTTGTAGCAATATTTAAACACTTGAATGAAAATTGCAAGAAAGAACTAGAGACAATAAACAGGCAATATCCATTTGAACCTCTGAAGTATTTAGAGAAAACTTTGAAGCTCACGTATGAAGAAGGAATTCAAATGCTGAAGGAAGCTGGAACAGAAATCGAACCCATGGGTGACCTCAACACTGAAGCTGAGAAAAAACTAGGCCGGCTTGTTAAGGAGAAGTATGGAACAGAATTTTTCATCCTCTATCGGTATCCTTTGGCTGTGCGTCCCTTCTACACCATGCCTTGTTATGACAACCCAGCTTACAGTAACTCTTTTGATGTCTTTATTCGAGGAGAGGAAATAATATCTGGAGCACAAAGAATACATTTACCAGAGCTATTGACGAAACGTGCAACAGAGTGTGGAATTGATGCGAGTACTATTTCATCATATATCGAATCGTTCAGCTATGGTGCACCTCCTCATGGTGGTTTTGGTGTCGGCCTGGAGAGGGTGGTAATGCTGTTCTGCGCCCTAAACAACATCAGGAAGACATCACTTTTCCCTCGCGATCCACAAAGGCTGGTGCCATAATTTGCTTTTTTTCCCAAGAGCAAGGTTTGGACTCAGTACGGACTGGGCAGTTTTCCTCGGCTGGTTTTTTTACCTGGACATTATTTTCGTATTTATTAATGTGCTGTACTGCAAAAGCTGCTCCTTTCCACAACATTTGGAATAGTTGCCGATACATTTGGAATAGGGCTCAACGTTGGCGTTGTGATTTCGTTGATGATTCCGCTATTCGTAACAATGGCGAATCCAGAGCAGAAATGACCCTATGTCAGAAACATATCACATACTCGTATGCCTATATTTCCAAAAGATAAGGGATTATGGAAGGATGACATATTCAAGTCCCAAAATACAAGGTGTGGTTTGACTCGTGGTCTTCAACATCCAACTTTTGATTGTCATTTTCTGTCATGGTACCACCTTCATCCTAATTTGACATTCTCTAAGTAGAAGGCACCAATACCAAGAAAAGTGTGAATGACTTATATTTTAAATATTGGATGTCATTGCACCATTAGAAATTAATCTTGTTGGTTGCATGTAACACATTCAATGATGCACATTACTCACATTACTCTTTGTACAAATAAACAAAATGACACTTGTTTAATGATGATCATTTTGGAAAGACCCCAGAAA
CDS Sequence
- >LOC_Os02g46130.1
ATGTCGTCGGAGCCTCCACCCGATGCCGCCGCCGCCGCCGCCTCCTCCGCGGGGGATCTCGCGGCCGATCTCTCCTCCGCCACCATCAGCAAGAAGCAGCTCAAGAAGGATGCGAGGAAGGCGGAGAAGGCCGAGAAGGCGTCGCAGCGCCAGCAGCAGCAGCAGCCGCAGGCCGACGCCGACGACCCCTTCGCGGCCAACTACGGCGACGTCCCCGTCGAGGAGATCCAGTCCAAGACCATCTCCGGCCGCGTGTGGACCGAGATCGGCGGCCTCGACGAGGCCGCCGCCGGCCGCTCCGTCCTCATCCGCGGCGCCGCGCAGGCGATCCGGCCCGTCAGCAAGAAGATGGCCTTCGTTGTGCTGCGCGAGAGCATGAGCACCGTCCAGTGCGTGCTCGTCGCCAGCGCCGACGCAGGGGTCAGCACCCAGATGGTGCGCTTCGCCACCTCCCTCAGCAAGGAATCAATCGTCGACGTCGAGGGCGTCGTCTCCCTCCCCAAGGAGCCCCTCAAGGCCACCACGCAGCAGGTGGAGATTCAGGTGAGGAAGATCTATTGCATCAATAGGGCGATCCCCACCCTTCCAATCAACCTTGAGGATGCCTCACGGAGTGAGGCTGAAATTGAAAAGGCTGAACAAGCTGGAGAGAAGCTAGTTCGTGTGGGCCAAGATACTCGCTTGAACTATAGAGCTATTGATCTCCGGACACCTGCAAATCAAGCAATATTCAGAATTCAATGTCAAGTTGAGAACAAATTCAGGGAATATTTTCTGTCGAAAAATTTTGTTGGGATTCACAGCCCAAAGCTAATTGCTGGATCCAGCGAAGGTGGTGCAGCTGTATTCAAGCTACAGTACAATGGACAGCCAGCATGTTTAGCACAGTCTCCTCAGTTGTATAAGCAGATGGCTATTTGTGGTGGGTTTGAACGTGTATTTGAGGTTGGACCTGTTTTTAGAGCTGAGAATTCAAACACTCACAGGCATCTGTGTGAGTTTGTTGGCCTTGATGCTGAGATGGAGATTAAGGAACATTATTTTGAGGTTTGCGACATAATAGATGGTTTGTTTGTAGCAATATTTAAACACTTGAATGAAAATTGCAAGAAAGAACTAGAGACAATAAACAGGCAATATCCATTTGAACCTCTGAAGTATTTAGAGAAAACTTTGAAGCTCACGTATGAAGAAGGAATTCAAATGCTGAAGGAAGCTGGAACAGAAATCGAACCCATGGGTGACCTCAACACTGAAGCTGAGAAAAAACTAGGCCGGCTTGTTAAGGAGAAGTATGGAACAGAATTTTTCATCCTCTATCGGTATCCTTTGGCTGTGCGTCCCTTCTACACCATGCCTTGTTATGACAACCCAGCTTACAGTAACTCTTTTGATGTCTTTATTCGAGGAGAGGAAATAATATCTGGAGCACAAAGAATACATTTACCAGAGCTATTGACGAAACGTGCAACAGAGTGTGGAATTGATGCGAGTACTATTTCATCATATATCGAATCGTTCAGCTATGGTGCACCTCCTCATGGTGGTTTTGGTGTCGGCCTGGAGAGGGTGGTAATGCTGTTCTGCGCCCTAAACAACATCAGGAAGACATCACTTTTCCCTCGCGATCCACAAAGGCTGGTGCCATAA
Protein Sequence
- >LOC_Os02g46130.1
MSSEPPPDAAAAAASSAGDLAADLSSATISKKQLKKDARKAEKAEKASQRQQQQQPQADADDPFAANYGDVPVEEIQSKTISGRVWTEIGGLDEAAAGRSVLIRGAAQAIRPVSKKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFATSLSKESIVDVEGVVSLPKEPLKATTQQVEIQVRKIYCINRAIPTLPINLEDASRSEAEIEKAEQAGEKLVRVGQDTRLNYRAIDLRTPANQAIFRIQCQVENKFREYFLSKNFVGIHSPKLIAGSSEGGAAVFKLQYNGQPACLAQSPQLYKQMAICGGFERVFEVGPVFRAENSNTHRHLCEFVGLDAEMEIKEHYFEVCDIIDGLFVAIFKHLNENCKKELETINRQYPFEPLKYLEKTLKLTYEEGIQMLKEAGTEIEPMGDLNTEAEKKLGRLVKEKYGTEFFILYRYPLAVRPFYTMPCYDNPAYSNSFDVFIRGEEIISGAQRIHLPELLTKRATECGIDASTISSYIESFSYGAPPHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQRLVP*