Gene Details:

Functional Descriptions:

  • OsCER1 was highly expressed in the tapetum (stage 10) and bicellular pollen cells (stage 11).
  • Downregulation of OsCER1 in rice led to sterility, and fewer amyloplasts within the mature pollen grains.
  • Furthermore, significantly altered levels of expression of genes involved in the pollen development were exhibited in the OsCER1 knocked down plants.
  • These results indicate that OsCER1 is critical for VLC alkanes biosynthesis, plastids differentiation, and pollen development.
  • OsCER1 Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (Oryza sativa L.).
  • In addition, the downregulation of OsCER1 in rice caused delayed tapetal programmed cell death and abnormal development of plastids in the tapetal cells.
  • OsGL1-4 is preferentially expressed in pollen and tapetal cells, and is required for the synthesis of very-long-chain alkanes.
  • Gas chromatography-mass spectrometry analysis suggested the humidity-sensitive male sterility of OsGL1-4 was probably due to a significant reduction in C25 and C27 alkanes.
  • OsCER1 regulates humidity-sensitive genic male sterility through very-long-chain (VLC) alkane metabolism of tryphine in rice.
  • Phenotypic investigation of NPB and LTR1 suggested that LTR1 showed rumpled leaf with uneven distribution of bulliform cells and sclerenchyma cells, and disordered vascular bundles.
  • A decrease in seed-setting rate in LTR1 led to decreased per-plant grain yield.
  • Moreover, LTR1 was sensitive to salt stress, and LTR1 was strongly induced by salt stress.
  • Moreover, overexpression of LTR1 enhanced yield in rice and LTR1 positively regulates salt stress by affecting water and ion homeostasis.
  • Map-based cloning of LTR1 showed that there was a 2-bp deletion in the eighth exon of LOC_Os02g40784 in LTR1, resulting in a frameshift mutation and early termination of transcription.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os02g40784.1
    GGTTGGGTTGGTGCTTGGCTAGCCACGGTATTATTGCGTGAAAGAGGGGGAGGTGAGGACGTGAGGTGAGGTGAGGTGAGGCAGAGTGACCACAGCGACGGCAGCGTAGCCATGGCGACCAGGCCGGGCCCTTTGACCGAATGGCCGTGGCATAGGCTGGGGAACTTCAAGTACGTGGTGATGGCCCCCGTGGTGGCGCACGGCGCGCGCCGGGTGATGCGCAACGGGTGGGGCGACCTCGACATCGCCTTCTCCCTCATCCTGCCGTCGCTGCTGCTGCGGATGATCCACAACCAGATCTGGATCAGCCTCTCCCGCTACCAGACCGCCCGCAGCAAGCACCGCATCGTCGACCGCGGCATCGAGTTCGACCAGGTCGACCGCGAGCGAGGCTGGGATGACCAGATCCTGTTCAATGGGTTGGTGTTCTACGCGGGGTACCTGGCGATGCCGAGCGTGAGGCGGATGCCGGTGTGGAGGACGGACGGCGCCGTGGTGACGGCGCTGGTGCACACGGGCCCCGTCGAGTTCCTCTACTACTGGTTCCACCGCGCGCTGCACCACCACTTCCTCTACTCCCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCCATCACCTCTGTTATTCATCCTTTTGCTGAACATGTGGTCTATTTCATACTGTTTGCAATCCCCATACTGTCAACAATTTATTTGGGAAATGTTTCGGCCATGGGCATTGTGGGGTACATTGCTTACATTGACTTCATGAACAACATGGGACACTGCAATTTTGAGTTGGTGCCAGAGTGGATTTTCCAAATCTTTCCACCCCTTAAGTATCTGATCTACACCCCATCGTTCCATTCTCTTCATCATACGCAGTTCCGCACAAACTACTCGCTATTCATGCCATTTTATGACTACATATATAACACCATGGACAAGTCATCTGACGAGCTGTATGAAAGCTCACTGAAAGGAACGGAAGAAACACCTGACCTTGTTCATCTCACGCATATGACCAACTTGCAATCAGCCTATCATCTAAGGATAGGAATTGCATCCATAGCCTCCAAACCGTACAGTGACTCTGCGTGGTACATGTGGACGTTATGGCCCTTGGCATGGCTGTCAATGGTACTTGCATGGATTTATGGGTCCTCAGCATTTGTCGTTGAGAGAATTAAACTAAACAAGATGAAGATGCAAACATGGGCATTACCAAGATACAACTTCCAATATGGCCTTACGTGGGAGAGAGAACCAATCAACGACTTAATTGAAAAGGCAATATTGGATGCTGATATGAAAGGGGTTAAAGTGATTAGTCTAGGACTACTGAATCAGGCAAAGCAGCTCAATGGAAACGGTGAACTATTTAGACAGAAGTATCCAAAATTAGGAGTTCGAATTATCGACGGAAGTGGCTTAGCTACTGCAGTGGTGCTAAAAAGTATTCCTTCAGATGCAAAGAAAGTTTTTCTTCGTACAGGCACTTCTAAGATAGCTCGTGCCATTGCCATTGCACTATGTGACAGAGGTGTCCAGGTGATCATGAATGAAAAGGAGGTATACCACATGCTCAAGTCACAAATACCAGAGAACAGGGCAAGCTATTTGAAACTCTCGAGCGACAACGTACCTCAGCTTTGGATAGTACACAATATTGACGACAACGAGCAAAAGATGGCGCCAAAAGGAACAATTTTTATTCCCATATCACAGTTCCCCCTTAAGAAACTTCGCAAGGACTGCACTTACATGAGCACCCCAGCAATGAGGATCCCGGAGGAAATGAAGAATATCCACTCCTGCGAGAATTGGCTTCCAAGAAGGGTGATGAGTGCTTGGCACATTGCTGGAATACTTCATGCTCTGGAAGGATGGAACATGCACGAGTGTGGGGATGAGATGATGGATATTGAGAAATCATGGTCAGCTGCCATTCGGCATGGATTCCTTCCTCTCACTAAAGCTTGACACCTCTGGAAGCATGGATGGTGTATTCCATGCTAGTAGATGATGCTATGATTTCCAGCAACGGCATAATCCATTCATTATCTAGCTTGGGAACCAGATGGATTATTCACTTATTATCTTACTATGTTTGTAATACTGAGCTTGGGTACTGATAAGTCATGAGGAGGCACAGTGCAAACGAACTTAATTCCAATAGCTCAGTATTTTATAATCTATAGTCTATGTCAGTTCTGTAACATTACGTTTATCTCTTATTTGAATCTTGTGGGGGAATAATTAAAATAATAGGCAATGTTTTCTTGTTTAGACTTCGCAAAGTAAAACCTGACTGATCGCACGGTCAGTGCTCTTGAGACGAGACAAACAAGACCAGGTAAAGCTAAGCTTACTCGCTGGCTCGCTGCTACTATCGTTTTAGCCTTCCCTTAAAGTTTGATTCGACACTGTAAAATTCGCCCATGACGCTCTGCACAAAATCTTTGAAACTAGTGGCAACACAGCAAAATCAGATGC
  • >LOC_Os02g40784.3
    GGTTGGGTTGGTGCTTGGCTAGCCACGGTATTATTGCGTGAAAGAGGGGGAGGTGAGGACGTGAGGTGAGGTGAGGTGAGGCAGAGTGACCACAGCGACGGCAGCGTAGCCATGGCGACCAGGCCGGGCCCTTTGACCGAATGGCCGTGGCATAGGCTGGGGAACTTCAAGTACGTGGTGATGGCCCCCGTGGTGGCGCACGGCGCGCGCCGGGTGATGCGCAACGGGTGGGGCGACCTCGACATCGCCTTCTCCCTCATCCTGCCGTCGCTGCTGCTGCGGATGATCCACAACCAGATCTGGATCAGCCTCTCCCGCTACCAGACCGCCCGCAGCAAGCACCGCATCGTCGACCGCGGCATCGAGTTCGACCAGGTCGACCGCGAGCGAGGCTGGGATGACCAGATCCTGTTCAATGGGTTGGTGTTCTACGCGGGGTACCTGGCGATGCCGAGCGTGAGGCGGATGCCGGTGTGGAGGACGGACGGCGCCGTGGTGACGGCGCTGGTGCACACGGGCCCCGTCGAGTTCCTCTACTACTGGTTCCACCGCGCGCTGCACCACCACTTCCTCTACTCCCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCCATCACCTCTGTTATTCATCCTTTTGCTGAACATGTGGTCTATTTCATACTGTTTGCAATCCCCATACTGTCAACAATTTATTTGGGAAATGTTTCGGCCATGGGCATTGTGGGGTACATTGCTTACATTGACTTCATGAACAACATGGGACACTGCAATTTTGAGTTGGTGCCAGAGTGGATTTTCCAAATCTTTCCACCCCTTAAGTATCTGATCTACACCCCATCGTTCCATTCTCTTCATCATACGCAGTTCCGCACAAACTACTCGCTATTCATGCCATTTTATGACTACATATATAACACCATGGACAAGTCATCTGACGAGCTGTATGAAAGCTCACTGAAAGGAACGGAAGAAACACCTGACCTTGTTCATCTCACGCATATGACCAACTTGCAATCAGCCTATCATCTAAGGATAGGAATTGCATCCATAGCCTCCAAACCGTACAGTGACTCTGCGTGGTACATGTGGACGTTATGGCCCTTGGCATGGCTGTCAATGGTACTTGCATGGATTTATGGGTCCTCAGCATTTGTCGTTGAGAGAATTAAACTAAACAAGATGAAGATGCAAACATGGGCATTACCAAGATACAACTTCCAATATGGCCTTACGTGGGAGAGAGAACCAATCAACGACTTAATTGAAAAGGCAATATTGGATGCTGATATGAAAGGGGTTAAAGTGATTAGTCTAGGACTACTGAATCAGGCAAAGCAGCTCAATGGAAACGGTGAACTATTTAGACAGAAGTATCCAAAATTAGGAGTTCGAATTATCGACGGAAGTGGCTTAGCTACTGCAGTGGTGCTAAAAAGTATTCCTTCAGATGCAAAGAAAGTTTTTCTTCGTACAGGCACTTCTAAGATAGCTCGTGCCATTGCCATTGCACTATGTGACAGAGGTGTCCAGGTGATCATGAATGAAAAGGAGGTATACCACATGCTCAAGTCACAAATACCAGAGAACAGGGCAAGCTATTTGAAACTCTCGAGCGACAACGTACCTCAGCTTTGGATAGTACACAATATTGACGACAACGAGCAAAAGATGGCGCCAAAAGGAACAATTTTTATTCCCATATCACAGTTCCCCCTTAAGAAACTTCGCAAGGACTGCACTTACATGAGCACCCCAGCAATGAGGATCCCGGAGGAAATGAAGAATATCCACTCCTGCGAGAATTGGCTTCCAAGAAGGGTGATGAGTGCTTGGCACATTGCTGGAATACTTCATGCTCTGGAAGGATGGAACATGCACGAGTGTGGGGATGAGATGATGGATATTGAGAAATCATGGTCAGCTGCCATTCGGCATGGATTCCTTCCTCTCACTAAAGCTTGACACCTCTGGAAGCATGGATGGTGTATTCCATGCTAGTAGATGATGCTATGATTTCCAGCAACGGCATAATCCATTCATTATCTAGCTTGGGAACCAGATGGATTATTCACTTATTATCTTACTATGTTTGTAATACTGAGCTTGGGTACTGATAAGTCATGAGGAGGCACAGTGCAAACGAACTTAATTCCAATAGCTCAGTATTTTATAATCTATAGTCTATGTCAGTTCTGTAACATTACGTTTATCTCTTATTTGAATCTTGTGGGGGAATAATTAAAATAATAGGCAATGTTTTCTTGTTTAGACTTCGCAAAGTAAAACCTGACTGATCGCACGGTCAGTGCTCTTGAGACGAGACAAACAAGACCAGGTAAAGCTAAGCTTACTCGCTGGCTCGCTGCTACTATCGTTTTAGCCTTCCCTTAAAGTTTGATTCGACACTGTAAAATTCGCCCATGACGCTCTGCACAAAATCTTTGAAACTAGTGGCAACACAGCAAAATCAGATGC
CDS Sequence
  • >LOC_Os02g40784.1
    ATGGCGACCAGGCCGGGCCCTTTGACCGAATGGCCGTGGCATAGGCTGGGGAACTTCAAGTACGTGGTGATGGCCCCCGTGGTGGCGCACGGCGCGCGCCGGGTGATGCGCAACGGGTGGGGCGACCTCGACATCGCCTTCTCCCTCATCCTGCCGTCGCTGCTGCTGCGGATGATCCACAACCAGATCTGGATCAGCCTCTCCCGCTACCAGACCGCCCGCAGCAAGCACCGCATCGTCGACCGCGGCATCGAGTTCGACCAGGTCGACCGCGAGCGAGGCTGGGATGACCAGATCCTGTTCAATGGGTTGGTGTTCTACGCGGGGTACCTGGCGATGCCGAGCGTGAGGCGGATGCCGGTGTGGAGGACGGACGGCGCCGTGGTGACGGCGCTGGTGCACACGGGCCCCGTCGAGTTCCTCTACTACTGGTTCCACCGCGCGCTGCACCACCACTTCCTCTACTCCCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCCATCACCTCTGTTATTCATCCTTTTGCTGAACATGTGGTCTATTTCATACTGTTTGCAATCCCCATACTGTCAACAATTTATTTGGGAAATGTTTCGGCCATGGGCATTGTGGGGTACATTGCTTACATTGACTTCATGAACAACATGGGACACTGCAATTTTGAGTTGGTGCCAGAGTGGATTTTCCAAATCTTTCCACCCCTTAAGTATCTGATCTACACCCCATCGTTCCATTCTCTTCATCATACGCAGTTCCGCACAAACTACTCGCTATTCATGCCATTTTATGACTACATATATAACACCATGGACAAGTCATCTGACGAGCTGTATGAAAGCTCACTGAAAGGAACGGAAGAAACACCTGACCTTGTTCATCTCACGCATATGACCAACTTGCAATCAGCCTATCATCTAAGGATAGGAATTGCATCCATAGCCTCCAAACCGTACAGTGACTCTGCGTGGTACATGTGGACGTTATGGCCCTTGGCATGGCTGTCAATGGTACTTGCATGGATTTATGGGTCCTCAGCATTTGTCGTTGAGAGAATTAAACTAAACAAGATGAAGATGCAAACATGGGCATTACCAAGATACAACTTCCAATATGGCCTTACGTGGGAGAGAGAACCAATCAACGACTTAATTGAAAAGGCAATATTGGATGCTGATATGAAAGGGGTTAAAGTGATTAGTCTAGGACTACTGAATCAGGCAAAGCAGCTCAATGGAAACGGTGAACTATTTAGACAGAAGTATCCAAAATTAGGAGTTCGAATTATCGACGGAAGTGGCTTAGCTACTGCAGTGGTGCTAAAAAGTATTCCTTCAGATGCAAAGAAAGTTTTTCTTCGTACAGGCACTTCTAAGATAGCTCGTGCCATTGCCATTGCACTATGTGACAGAGGTGTCCAGGTGATCATGAATGAAAAGGAGGTATACCACATGCTCAAGTCACAAATACCAGAGAACAGGGCAAGCTATTTGAAACTCTCGAGCGACAACGTACCTCAGCTTTGGATAGTACACAATATTGACGACAACGAGCAAAAGATGGCGCCAAAAGGAACAATTTTTATTCCCATATCACAGTTCCCCCTTAAGAAACTTCGCAAGGACTGCACTTACATGAGCACCCCAGCAATGAGGATCCCGGAGGAAATGAAGAATATCCACTCCTGCGAGAATTGGCTTCCAAGAAGGGTGATGAGTGCTTGGCACATTGCTGGAATACTTCATGCTCTGGAAGGATGGAACATGCACGAGTGTGGGGATGAGATGATGGATATTGAGAAATCATGGTCAGCTGCCATTCGGCATGGATTCCTTCCTCTCACTAAAGCTTGA
  • >LOC_Os02g40784.3
    ATGGCGACCAGGCCGGGCCCTTTGACCGAATGGCCGTGGCATAGGCTGGGGAACTTCAAGTACGTGGTGATGGCCCCCGTGGTGGCGCACGGCGCGCGCCGGGTGATGCGCAACGGGTGGGGCGACCTCGACATCGCCTTCTCCCTCATCCTGCCGTCGCTGCTGCTGCGGATGATCCACAACCAGATCTGGATCAGCCTCTCCCGCTACCAGACCGCCCGCAGCAAGCACCGCATCGTCGACCGCGGCATCGAGTTCGACCAGGTCGACCGCGAGCGAGGCTGGGATGACCAGATCCTGTTCAATGGGTTGGTGTTCTACGCGGGGTACCTGGCGATGCCGAGCGTGAGGCGGATGCCGGTGTGGAGGACGGACGGCGCCGTGGTGACGGCGCTGGTGCACACGGGCCCCGTCGAGTTCCTCTACTACTGGTTCCACCGCGCGCTGCACCACCACTTCCTCTACTCCCGCTACCACTCCCACCACCACGCCTCCATCGTCACCGAGCCCATCACCTCTGTTATTCATCCTTTTGCTGAACATGTGGTCTATTTCATACTGTTTGCAATCCCCATACTGTCAACAATTTATTTGGGAAATGTTTCGGCCATGGGCATTGTGGGGTACATTGCTTACATTGACTTCATGAACAACATGGGACACTGCAATTTTGAGTTGGTGCCAGAGTGGATTTTCCAAATCTTTCCACCCCTTAAGTATCTGATCTACACCCCATCGTTCCATTCTCTTCATCATACGCAGTTCCGCACAAACTACTCGCTATTCATGCCATTTTATGACTACATATATAACACCATGGACAAGTCATCTGACGAGCTGTATGAAAGCTCACTGAAAGGAACGGAAGAAACACCTGACCTTGTTCATCTCACGCATATGACCAACTTGCAATCAGCCTATCATCTAAGGATAGGAATTGCATCCATAGCCTCCAAACCGTACAGTGACTCTGCGTGGTACATGTGGACGTTATGGCCCTTGGCATGGCTGTCAATGGTACTTGCATGGATTTATGGGTCCTCAGCATTTGTCGTTGAGAGAATTAAACTAAACAAGATGAAGATGCAAACATGGGCATTACCAAGATACAACTTCCAATATGGCCTTACGTGGGAGAGAGAACCAATCAACGACTTAATTGAAAAGGCAATATTGGATGCTGATATGAAAGGGGTTAAAGTGATTAGTCTAGGACTACTGAATCAGGCAAAGCAGCTCAATGGAAACGGTGAACTATTTAGACAGAAGTATCCAAAATTAGGAGTTCGAATTATCGACGGAAGTGGCTTAGCTACTGCAGTGGTGCTAAAAAGTATTCCTTCAGATGCAAAGAAAGTTTTTCTTCGTACAGGCACTTCTAAGATAGCTCGTGCCATTGCCATTGCACTATGTGACAGAGGTGTCCAGGTGATCATGAATGAAAAGGAGGTATACCACATGCTCAAGTCACAAATACCAGAGAACAGGGCAAGCTATTTGAAACTCTCGAGCGACAACGTACCTCAGCTTTGGATAGTACACAATATTGACGACAACGAGCAAAAGATGGCGCCAAAAGGAACAATTTTTATTCCCATATCACAGTTCCCCCTTAAGAAACTTCGCAAGGACTGCACTTACATGAGCACCCCAGCAATGAGGATCCCGGAGGAAATGAAGAATATCCACTCCTGCGAGAATTGGCTTCCAAGAAGGGTGATGAGTGCTTGGCACATTGCTGGAATACTTCATGCTCTGGAAGGATGGAACATGCACGAGTGTGGGGATGAGATGATGGATATTGAGAAATCATGGTCAGCTGCCATTCGGCATGGATTCCTTCCTCTCACTAAAGCTTGA
Protein Sequence
  • >LOC_Os02g40784.1
    MATRPGPLTEWPWHRLGNFKYVVMAPVVAHGARRVMRNGWGDLDIAFSLILPSLLLRMIHNQIWISLSRYQTARSKHRIVDRGIEFDQVDRERGWDDQILFNGLVFYAGYLAMPSVRRMPVWRTDGAVVTALVHTGPVEFLYYWFHRALHHHFLYSRYHSHHHASIVTEPITSVIHPFAEHVVYFILFAIPILSTIYLGNVSAMGIVGYIAYIDFMNNMGHCNFELVPEWIFQIFPPLKYLIYTPSFHSLHHTQFRTNYSLFMPFYDYIYNTMDKSSDELYESSLKGTEETPDLVHLTHMTNLQSAYHLRIGIASIASKPYSDSAWYMWTLWPLAWLSMVLAWIYGSSAFVVERIKLNKMKMQTWALPRYNFQYGLTWEREPINDLIEKAILDADMKGVKVISLGLLNQAKQLNGNGELFRQKYPKLGVRIIDGSGLATAVVLKSIPSDAKKVFLRTGTSKIARAIAIALCDRGVQVIMNEKEVYHMLKSQIPENRASYLKLSSDNVPQLWIVHNIDDNEQKMAPKGTIFIPISQFPLKKLRKDCTYMSTPAMRIPEEMKNIHSCENWLPRRVMSAWHIAGILHALEGWNMHECGDEMMDIEKSWSAAIRHGFLPLTKA*
  • >LOC_Os02g40784.3
    MATRPGPLTEWPWHRLGNFKYVVMAPVVAHGARRVMRNGWGDLDIAFSLILPSLLLRMIHNQIWISLSRYQTARSKHRIVDRGIEFDQVDRERGWDDQILFNGLVFYAGYLAMPSVRRMPVWRTDGAVVTALVHTGPVEFLYYWFHRALHHHFLYSRYHSHHHASIVTEPITSVIHPFAEHVVYFILFAIPILSTIYLGNVSAMGIVGYIAYIDFMNNMGHCNFELVPEWIFQIFPPLKYLIYTPSFHSLHHTQFRTNYSLFMPFYDYIYNTMDKSSDELYESSLKGTEETPDLVHLTHMTNLQSAYHLRIGIASIASKPYSDSAWYMWTLWPLAWLSMVLAWIYGSSAFVVERIKLNKMKMQTWALPRYNFQYGLTWEREPINDLIEKAILDADMKGVKVISLGLLNQAKQLNGNGELFRQKYPKLGVRIIDGSGLATAVVLKSIPSDAKKVFLRTGTSKIARAIAIALCDRGVQVIMNEKEVYHMLKSQIPENRASYLKLSSDNVPQLWIVHNIDDNEQKMAPKGTIFIPISQFPLKKLRKDCTYMSTPAMRIPEEMKNIHSCENWLPRRVMSAWHIAGILHALEGWNMHECGDEMMDIEKSWSAAIRHGFLPLTKA*