Information report for SDG725
Gene Details
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Functional Descriptions
- Here, we report that rice SDG725 encodes a H3K36 methyltransferase, and its down-regulation causes wide-ranging defects, including dwarfism, shortened internodes, erect leaves and small seeds.
- Taken together, our data indicate that SDG725-mediated H3K36 methylation modulates brassinosteroid-related gene expression, playing an important role in rice plant growth and development.
- Consistently, transcriptome analyses revealed that SDG725 depletion results in down-regulation by more than two-fold of over 1000 genes, including D11, BRI1 and BU1, which are known to be involved in brassinosteroid biosynthesis or signaling pathways.
- Chromatin immunoprecipitation analyses showed that levels of H3K36me2/3 are reduced in chromatin at some regions of these brassinosteroid-related genes in SDG725 knockdown plants, and that SDG725 protein is able to directly bind to these target genes.
Functional Keywords
- seed , growth , erect , dwarf , brassinosteroid
Literature and News
- H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice . DOI: 10.1111/j.1365-313X.2011.04873.x ; PMID: 22136623
- H3K36 methylation is involved in promoting rice flowering . DOI: 10.1093/mp/sss152 ; PMID: 23239829
- Transcriptional and post-transcriptional regulation of heading date in rice . DOI: 10.1111/nph.17158 ; PMID: 33341945
Gene Resources
- NCBI ID: AK064575
Sequences
cDNA Sequence
- >LOC_Os02g34850.1
ACAATGATATTGGTGAAGGAAAGCAAACTTTAGCGAAGTCCAATACGATGAGGAAAGGTAGAAATGTGGGAAAGCAGGAATGCCGAAAGAAAGATGGAAAGAAGGGAAAAAACATAAACAAAAATAGAAGTTCCACCAAAATTTCATCTAGTGAAGCTTCAAAACTCGTGTCCTTTTCTAATGATTCACCTTCACTTGATCCATCTGAGTTGCTGCTTCATACGAGACCTCCAAAGTTTGGTTCTTGTTCTAAGGTCGTAACTTCTGCCATACATGATGTTGGTATGCATGGATATGACAATATGCGTCCTTTTGGAATTGACAATGATGACGAAGGGAGTGCATTTGACAATGTGAAATCACTAAGGCGCAAGAAAAAGGATAGTCATGGAGGAAAGAAGGGTAAGGTGCGGGATCCACATGGGAAGGGCAGAAGCAAGAAGAAAAATATAGCTGATAACACCTACGGTTTGCCGGCTCAGTTAACTGACCTGTCAGAACCTCGCATGAATAAACAGAGTGATCTTATTCCTGCTGCTGAACTTGTATTCAAGAACTCTTCTGCCGTATCTGTTGAATTACCTGCAGTTGTTGCTTGCAAAACTGATGGTGCATCTGTACCACCAGCACCTGCTTGGGTTTGTTGTGATGATTGCGAAAAATGGCGCTGCATACCAACTGAACTGGCAGATAAAATCTCAAAAGAAAATCTCAGATGGACTTGTAAGGAAAACGAAGATAAGACATTTGCCAATTGCTCTATACCACAAGAGAAGACAGATGATGAGATCAATGCAGAGCTTGGGCTTTCAGATGCTTCTGCTGATGAAGCTAATGGCGATGGATCAAACTCGAAAGCTTCTGGAGAACCAAACTTTGCACTTCTCAGGTCAAACTTGTTTCTACATCGTAACCGCAGGACACAATCCATTGATGAGAGCATGGTATGCAATTGTAAGCCGCCTCACGATGACCGAATGGGTTGTAGAGATGGTTGCTTGAACAGGATACTCAACATTGAATGCACCAAACGTACATGTCCATGTGGGGAGCACTGTTCCAATCAGCAGTTCCAAAGGCGCACCTATGCAAAACTTGGTAAGTTCCATACTGGTAAAAAGGGCTATGGATTGCAATTGAAGGAAGATGTATCTGAAGGACGATTCCTCATTGAATATGTTGGAGAGGTCCTTGATATAACGGCTTATGAATCCCGCCAAAGGTATTATGCCTCTAAAGGCCAGAAGCATTTCTATTTCATGGCACTTAATGGTGGTGAGGTGATAGATGCTTGTACTAAAGGAAACTTGGGCCGGTTCATCAATCATAGCTGCAGTCCTAATTGCCGTACAGAGAAGTGGATGGTCAATGGTGAAGTCTGCATTGGAATATTTGCTATGAGGAACATCAAGAAGGGTGAAGAATTGACGTTTGATTACAACTATGTTCGTGTATCTGGTGCTGCTCCTCAGAAATGCTTTTGCGGTACTGCCAAATGCCGGGGTTACATCGGTGGTGACATATCAGGTGCTGATATGATTACTCAAGATGATGCTGAAGCAGGGACTTTCGAACCTATGGCTGTTCAGGAGGATGCTGAGGAAGTACTTGGTGCAAATGGTTTGTCCTCTCATGGCACACATCTAGATATTGTCGACCATGAAGCTTCCACTAAAACAGAAGATTCAAATGATTGCCCATCTGTGAACCCACCAGAGTTAGAATCTGAGCAACAAACTTCAGGAACCTTATTTGACACAAGTGAGCCAGAAAATTCCTTAGAAGCATTGAGCCCACAGGATGATGAAGATGTCGTCCGCACACCTGTCCATGTGTCCCGGACAGTTGAGAGTACGTCGCGGCAGTTTCCAGAATATGGTACTCGGTCATCAGAAATTTTGCAAAGGGCTCCATGCACACTGGATGGACCAAAGGTTCCAAGCACAACAAATGGAATTCCGCCTAGTTCCGATTTGGGGAGCCACTGGGTACCAGGTTTCCACGCTAATAAGAAAACCAATGTAAAACATCATTTGATTCTGAATCCATCATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTTGAAGGAAGATTGAACAGCTTGCTTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCAACAAATGGATACTTGAAGCTTCTCCTTGTGACTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAGTGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCTGTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAAAAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTTTGCATTTCTTTTTTATGTTATGTCTTATTACATTAGTTTCCAATTAATATATCACATTAGAGCAAGTACATCCCTTAACAACTGATCTAGGTGCTACAGTGGACATATCAACCCCCACAAGATCCTTGTTATCTACTCCCTCTGATTCTTTTATGACTTGTGCACAAAAATCAAGAAAAAAAAACTCAAAATGACTATTGTCCTTCATTTATGCTGCACTGGAAAAGATGATAATGTATTTTGTGAGATGGTGGCATTTATTTGGCAAGGGCAAACAAG
CDS Sequence
- >LOC_Os02g34850.1
ATGAGGAAAGGTAGAAATGTGGGAAAGCAGGAATGCCGAAAGAAAGATGGAAAGAAGGGAAAAAACATAAACAAAAATAGAAGTTCCACCAAAATTTCATCTAGTGAAGCTTCAAAACTCGTGTCCTTTTCTAATGATTCACCTTCACTTGATCCATCTGAGTTGCTGCTTCATACGAGACCTCCAAAGTTTGGTTCTTGTTCTAAGGTCGTAACTTCTGCCATACATGATGTTGGTATGCATGGATATGACAATATGCGTCCTTTTGGAATTGACAATGATGACGAAGGGAGTGCATTTGACAATGTGAAATCACTAAGGCGCAAGAAAAAGGATAGTCATGGAGGAAAGAAGGGTAAGGTGCGGGATCCACATGGGAAGGGCAGAAGCAAGAAGAAAAATATAGCTGATAACACCTACGGTTTGCCGGCTCAGTTAACTGACCTGTCAGAACCTCGCATGAATAAACAGAGTGATCTTATTCCTGCTGCTGAACTTGTATTCAAGAACTCTTCTGCCGTATCTGTTGAATTACCTGCAGTTGTTGCTTGCAAAACTGATGGTGCATCTGTACCACCAGCACCTGCTTGGGTTTGTTGTGATGATTGCGAAAAATGGCGCTGCATACCAACTGAACTGGCAGATAAAATCTCAAAAGAAAATCTCAGATGGACTTGTAAGGAAAACGAAGATAAGACATTTGCCAATTGCTCTATACCACAAGAGAAGACAGATGATGAGATCAATGCAGAGCTTGGGCTTTCAGATGCTTCTGCTGATGAAGCTAATGGCGATGGATCAAACTCGAAAGCTTCTGGAGAACCAAACTTTGCACTTCTCAGGTCAAACTTGTTTCTACATCGTAACCGCAGGACACAATCCATTGATGAGAGCATGGTATGCAATTGTAAGCCGCCTCACGATGACCGAATGGGTTGTAGAGATGGTTGCTTGAACAGGATACTCAACATTGAATGCACCAAACGTACATGTCCATGTGGGGAGCACTGTTCCAATCAGCAGTTCCAAAGGCGCACCTATGCAAAACTTGGTAAGTTCCATACTGGTAAAAAGGGCTATGGATTGCAATTGAAGGAAGATGTATCTGAAGGACGATTCCTCATTGAATATGTTGGAGAGGTCCTTGATATAACGGCTTATGAATCCCGCCAAAGGTATTATGCCTCTAAAGGCCAGAAGCATTTCTATTTCATGGCACTTAATGGTGGTGAGGTGATAGATGCTTGTACTAAAGGAAACTTGGGCCGGTTCATCAATCATAGCTGCAGTCCTAATTGCCGTACAGAGAAGTGGATGGTCAATGGTGAAGTCTGCATTGGAATATTTGCTATGAGGAACATCAAGAAGGGTGAAGAATTGACGTTTGATTACAACTATGTTCGTGTATCTGGTGCTGCTCCTCAGAAATGCTTTTGCGGTACTGCCAAATGCCGGGGTTACATCGGTGGTGACATATCAGGTGCTGATATGATTACTCAAGATGATGCTGAAGCAGGGACTTTCGAACCTATGGCTGTTCAGGAGGATGCTGAGGAAGTACTTGGTGCAAATGGTTTGTCCTCTCATGGCACACATCTAGATATTGTCGACCATGAAGCTTCCACTAAAACAGAAGATTCAAATGATTGCCCATCTGTGAACCCACCAGAGTTAGAATCTGAGCAACAAACTTCAGGAACCTTATTTGACACAAGTGAGCCAGAAAATTCCTTAGAAGCATTGAGCCCACAGGATGATGAAGATGTCGTCCGCACACCTGTCCATGTGTCCCGGACAGTTGAGAGTACGTCGCGGCAGTTTCCAGAATATGGTACTCGGTCATCAGAAATTTTGCAAAGGGCTCCATGCACACTGGATGGACCAAAGGTTCCAAGCACAACAAATGGAATTCCGCCTAGTTCCGATTTGGGGAGCCACTGGGTACCAGGTTTCCACGCTAATAAGAAAACCAATGTAAAACATCATTTGATTCTGAATCCATCATCAGCTCCTATTGACAGTGAGCACATTTTGGGAGTTGAAGGAAGATTGAACAGCTTGCTTGATGTAAATGGAGGTATTAGCAAACGAAAAGACGCAACAAATGGATACTTGAAGCTTCTCCTTGTGACTGCAGCGGAAGGTGACAATGCTGGGGGCACGTCTAAAAGTGTAAGGGATCTTTCGTTAATTCTTGATGCACTTCTGAAAACAAGATCCAATTCTGTCCTGTTGGATATCATCAATAAGAATGGACTGCAAATGCTTCACAATATATTAAAGCAGAATAAAAGCGATTTCCATAGGATACCTATAATAAGAAAGCTTGTGAAGGTTTGCATTTCTTTTTTATGTTATGTCTTATTACATTAG
Protein Sequence
- >LOC_Os02g34850.1
MRKGRNVGKQECRKKDGKKGKNINKNRSSTKISSSEASKLVSFSNDSPSLDPSELLLHTRPPKFGSCSKVVTSAIHDVGMHGYDNMRPFGIDNDDEGSAFDNVKSLRRKKKDSHGGKKGKVRDPHGKGRSKKKNIADNTYGLPAQLTDLSEPRMNKQSDLIPAAELVFKNSSAVSVELPAVVACKTDGASVPPAPAWVCCDDCEKWRCIPTELADKISKENLRWTCKENEDKTFANCSIPQEKTDDEINAELGLSDASADEANGDGSNSKASGEPNFALLRSNLFLHRNRRTQSIDESMVCNCKPPHDDRMGCRDGCLNRILNIECTKRTCPCGEHCSNQQFQRRTYAKLGKFHTGKKGYGLQLKEDVSEGRFLIEYVGEVLDITAYESRQRYYASKGQKHFYFMALNGGEVIDACTKGNLGRFINHSCSPNCRTEKWMVNGEVCIGIFAMRNIKKGEELTFDYNYVRVSGAAPQKCFCGTAKCRGYIGGDISGADMITQDDAEAGTFEPMAVQEDAEEVLGANGLSSHGTHLDIVDHEASTKTEDSNDCPSVNPPELESEQQTSGTLFDTSEPENSLEALSPQDDEDVVRTPVHVSRTVESTSRQFPEYGTRSSEILQRAPCTLDGPKVPSTTNGIPPSSDLGSHWVPGFHANKKTNVKHHLILNPSSAPIDSEHILGVEGRLNSLLDVNGGISKRKDATNGYLKLLLVTAAEGDNAGGTSKSVRDLSLILDALLKTRSNSVLLDIINKNGLQMLHNILKQNKSDFHRIPIIRKLVKVCISFLCYVLLH*