Information report for OsPUB73
Gene Details
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Functional Descriptions
- Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.
- In the present study, we knocked out OsPUB73 by using the CRISPR/Cas9 system and studied the cytological and transcriptome of the gene-defect associated with pollen development and sterility in the rice variety (Taichung 65).
- The OsPUB73 displayed low pollen fertility (19.
- Cytological observation showed tapetum vacuolated at the meiosis stage and pollen exine was abnormal at the bi-cellular pollen stage of OsPUB73.
- These results suggested OsPUB73 may play an important role in tapetal or pollen exine development and resulted in pollen partial sterility.
- The expression pattern of OsPUB73 showed that it was highly expressed in the anther during meiosis stage.
- RNA-seq analysis detected 2240 down and 571 up-regulated genes in anther of OsPUB73 compared with WT during meiosis stage.
- Our results revealed that OsPUB73 plays an important role in rice male reproductive development, which provides valuable information about the molecular mechanisms of the U-box in rice male reproductive development.
Functional Keywords
- pollen , anther , sterility , development , reproductive , meiosis , fertility , tapetum , tapetal , pollen-development , reproductive-development
Literature and News
Gene Resources
- UniProt: Q6K762
- EMBL: AK106789, AP004864, AP008208
- AlphaFoldDB: Q6K762
- EnsemblPlants: Os02t0490000-01
- Gramene: Os02t0490000-01
- KEGG: dosa:Os02g0490000
- Orthologous matrix: FHDVPQM
- InterPro: IPR003613, IPR011989, IPR013083
- PANTHER: PTHR23315, PTHR23315:SF260
- SUPFAM: SSF48371, SSF57850
- PROSITE: PS51698
- Gene3D: 1.25.10.10, 3.30.40.10
- OrthoDB: Q6K762
- SWISS-MODEL: Q6K762
- eggNOG: KOG0167
Sequences
cDNA Sequence
- >LOC_Os02g28870.1
ATCCAAACACCTCTTCACATTTTTCCCTCCAAGAAACCGACCCGCTCCACTCCACCCCGCAACGCAAGAAACCAAGAACTCCTCGACCGCCGGCTCGAGGCCACGGCCACCCACCCACCGCCGCCGGGAAGCAGCGATTCTTCCTCGGGAAGGAGGACACCGCCGGCCATGGATCCGGAGGCGGAGGAAGCGCAGCTTCGCCTCGAGATGGAGTTGGCAAAGAAGGCCAAGGCGGACATGTCTGGGTTGCAACGCTCCAGCAGCCTCGGCTTGGACCACGCCGGCTTGTATCCGCTGCCATTGCCGCCAGGGTGGCGGTCCGCCCCAACCTCGCCCCTGAGGACACCATCGAGCCCGCCCCCGCTCCAGTTCCCGCCGGCGTGGGCGGCTGATGTTGCCGGCACGTCGGGCTCGGCGGCGCCCGAGGACGATGGCCCAGCAAGAAATGCCGGCGCTGATGAAGCCACGGCTGGGTCTGCGCCCAAGAACGAGGACCCAGCAAGAGCTGCGGGCGCCGATGATGGCCCCACGAGGTCTGACTACGCCGCGATGATGCGGATGGCATTGGCCAAGTTCCAAGACGACGATGCTGCTGCCGACGACGAGGAGGCGGCGTCCGCGGTGATGGAGCAGGCGATGACCGGCCTCATGGACCTCACCTACCGCAAAGCGAAGCCTCCAGAGCTGCCTTACGAGTTCGCCACAAGATGGCCTATTCCTATTGCTCATGATGGTACGCTTCAAGCGGAAGTAATGCGTGATCCTGTTATCTTGCCTTCTGGATATTCTGTTGATCAAACATACCAAAACAACCAAAAACGGCAGAATCCATGGACAAATACCAGCACATTTACTGATCACTCCTTGCCCTACTCTCTCTCTGTTCCAAACCACCTTCTCCGTGACATGATTTCTGCATGGTGCCTCGATCACTCGGACCTTTCCCCATCTACCACTTCTGATACACCTTCCACTCCCTTGGAACCTTCAGAGGAGGAACAAATTCAACGCATCCTAAAACTATTCTCAGGGAATTCTGCATCGCAACGAGAGGCTTTGAAACTGATCCAGCTACTCACTAAAACCACCAAAGGGGTGCAACCTTGCCTTGCCAAGTATGCGGACATTATCCCAGTGCTGATAAATCTTAGGAGGAAATATAAATCGAGTTGGACACAAGATCTTGAGGAAGAGAGGCTCACAATAATCCTCAATCTGACCATGCACAGGCAAAACAGGGAGATCCTAGCTGGACAGAATGAATTAGCAGGTGCTATAAAAAAAATTGTTAAGAAGGCTGGCAATCGTGGTAAGCGAACATCATCCTTGGCGAAGGTAGCTTCTATAGTTGCTGTCCTGTCAGAGTTTGACATGTTCAGGAAAAGAATGCTGGATGCTGGTGGAATGAAAATGCTTCGAGGTATGCTCAAGATAAAGGATACTGAAGTGATAACGGAGGCTGCCACTGCGATCCTTGCACTCTACGCAGATGGTGAAGGCGAGCAACCAGCCAGATTTCATGAGGTGCCTCAGATGCTGCTGGAATGCCACATGTTCACTGATGGGATCCTGCTTCTTCTTGACCGTCTGCCAAAATCCCCACGTGTTTTCAGAAAAATCTGTGATCAGGCTTTGCAATTGGTGAATATCGTCATGGCTGAAGATGCAAGTGGGCCGGTGACACGTAAGGGCATCCTCTCAGCAATTTCCTTGATCTACGAGATTGTTGAAAGGGATGTGGGTAAGATGAATGCGGTGAAGAACATGGAGGATTTCATCGAGCGGTTGCGTCAGCTATCATCAGATAGATTGCCGATGCAGAAAATGCTCCAGGTGGAGAGAATAATCAGGACTCTGTCAGATGCGTTTCCAGCTCCTACGGTGCGAGGGCGATGCCAAGAACCCAGTGGAAGCCGTCTTCTAGCTTGAATCTTATACTGTTCTTCTGTACAGATCTCAAAAGGCTCGAGATTTTACTTCTGCTCGCTTAACTTTCTGGAGAAGTTTGAATTTGTTGACTGTGCAGCAATGTGATGGATCACACGAACAATTCAAAGCATAGACAGAATAACTTTGTTTCACTTCCTGGTGAGAGATTGTAACAAATGATTGGTGTTAGTAACTGACCGAATTGA
CDS Sequence
- >LOC_Os02g28870.1
ATGGATCCGGAGGCGGAGGAAGCGCAGCTTCGCCTCGAGATGGAGTTGGCAAAGAAGGCCAAGGCGGACATGTCTGGGTTGCAACGCTCCAGCAGCCTCGGCTTGGACCACGCCGGCTTGTATCCGCTGCCATTGCCGCCAGGGTGGCGGTCCGCCCCAACCTCGCCCCTGAGGACACCATCGAGCCCGCCCCCGCTCCAGTTCCCGCCGGCGTGGGCGGCTGATGTTGCCGGCACGTCGGGCTCGGCGGCGCCCGAGGACGATGGCCCAGCAAGAAATGCCGGCGCTGATGAAGCCACGGCTGGGTCTGCGCCCAAGAACGAGGACCCAGCAAGAGCTGCGGGCGCCGATGATGGCCCCACGAGGTCTGACTACGCCGCGATGATGCGGATGGCATTGGCCAAGTTCCAAGACGACGATGCTGCTGCCGACGACGAGGAGGCGGCGTCCGCGGTGATGGAGCAGGCGATGACCGGCCTCATGGACCTCACCTACCGCAAAGCGAAGCCTCCAGAGCTGCCTTACGAGTTCGCCACAAGATGGCCTATTCCTATTGCTCATGATGGTACGCTTCAAGCGGAAGTAATGCGTGATCCTGTTATCTTGCCTTCTGGATATTCTGTTGATCAAACATACCAAAACAACCAAAAACGGCAGAATCCATGGACAAATACCAGCACATTTACTGATCACTCCTTGCCCTACTCTCTCTCTGTTCCAAACCACCTTCTCCGTGACATGATTTCTGCATGGTGCCTCGATCACTCGGACCTTTCCCCATCTACCACTTCTGATACACCTTCCACTCCCTTGGAACCTTCAGAGGAGGAACAAATTCAACGCATCCTAAAACTATTCTCAGGGAATTCTGCATCGCAACGAGAGGCTTTGAAACTGATCCAGCTACTCACTAAAACCACCAAAGGGGTGCAACCTTGCCTTGCCAAGTATGCGGACATTATCCCAGTGCTGATAAATCTTAGGAGGAAATATAAATCGAGTTGGACACAAGATCTTGAGGAAGAGAGGCTCACAATAATCCTCAATCTGACCATGCACAGGCAAAACAGGGAGATCCTAGCTGGACAGAATGAATTAGCAGGTGCTATAAAAAAAATTGTTAAGAAGGCTGGCAATCGTGGTAAGCGAACATCATCCTTGGCGAAGGTAGCTTCTATAGTTGCTGTCCTGTCAGAGTTTGACATGTTCAGGAAAAGAATGCTGGATGCTGGTGGAATGAAAATGCTTCGAGGTATGCTCAAGATAAAGGATACTGAAGTGATAACGGAGGCTGCCACTGCGATCCTTGCACTCTACGCAGATGGTGAAGGCGAGCAACCAGCCAGATTTCATGAGGTGCCTCAGATGCTGCTGGAATGCCACATGTTCACTGATGGGATCCTGCTTCTTCTTGACCGTCTGCCAAAATCCCCACGTGTTTTCAGAAAAATCTGTGATCAGGCTTTGCAATTGGTGAATATCGTCATGGCTGAAGATGCAAGTGGGCCGGTGACACGTAAGGGCATCCTCTCAGCAATTTCCTTGATCTACGAGATTGTTGAAAGGGATGTGGGTAAGATGAATGCGGTGAAGAACATGGAGGATTTCATCGAGCGGTTGCGTCAGCTATCATCAGATAGATTGCCGATGCAGAAAATGCTCCAGGTGGAGAGAATAATCAGGACTCTGTCAGATGCGTTTCCAGCTCCTACGGTGCGAGGGCGATGCCAAGAACCCAGTGGAAGCCGTCTTCTAGCTTGA
Protein Sequence
- >LOC_Os02g28870.1
MDPEAEEAQLRLEMELAKKAKADMSGLQRSSSLGLDHAGLYPLPLPPGWRSAPTSPLRTPSSPPPLQFPPAWAADVAGTSGSAAPEDDGPARNAGADEATAGSAPKNEDPARAAGADDGPTRSDYAAMMRMALAKFQDDDAAADDEEAASAVMEQAMTGLMDLTYRKAKPPELPYEFATRWPIPIAHDGTLQAEVMRDPVILPSGYSVDQTYQNNQKRQNPWTNTSTFTDHSLPYSLSVPNHLLRDMISAWCLDHSDLSPSTTSDTPSTPLEPSEEEQIQRILKLFSGNSASQREALKLIQLLTKTTKGVQPCLAKYADIIPVLINLRRKYKSSWTQDLEEERLTIILNLTMHRQNREILAGQNELAGAIKKIVKKAGNRGKRTSSLAKVASIVAVLSEFDMFRKRMLDAGGMKMLRGMLKIKDTEVITEAATAILALYADGEGEQPARFHEVPQMLLECHMFTDGILLLLDRLPKSPRVFRKICDQALQLVNIVMAEDASGPVTRKGILSAISLIYEIVERDVGKMNAVKNMEDFIERLRQLSSDRLPMQKMLQVERIIRTLSDAFPAPTVRGRCQEPSGSRLLA*