Information report for TAP;TSD1
Gene Details
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Functional Descriptions
- Consistent with its thermosensitive phenotype, TAP expression is induced by high temperature.
- TAP directly promotes the expression of OsYABBY3 (OsYAB3), OsYAB4, and OsYAB5, which encode key transcriptional regulators in panicle and spikelet development.
- In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of osyab4 TAP-1 and osyab5 TAP-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development.
- The TAP mutants display high temperature-dependent reproductive abnormalities, including compromised secondary branch and spikelet initiation and pleiotropic floral organ defects.
- We isolated a Poaceae-specific FAR-RED ELONGATED HYPOCOTYLS3 (FHY3)/FAR-RED IMPAIRED RESPONSE1 (FAR1)family transcription factor, Thermo-sensitive Spikelet Defects 1 (TSD1), derived from transposase in rice (Oryza sativa) TSD1 was highly expressed in spikelets, induced by heat, and specifically enhanced the thermotolerance of spikelet morphogenesis.
- Disrupting TSD1 did not affect vegetative growth but markedly retarded spikelet initiation and development, as well as caused varying degrees of spikelet degeneration, depending on the temperature.
- Most TSD1 spikelets were normal at low temperature but gradually degenerated as temperature increased, and all disappeared at high temperature, leading to naked branches.
- Notably, the knockout mutant yab5-ko and double mutant TSD1 yab5-ko resembled TSD1 in spikelet appearance and response to temperature, indicating that these genes likely participate in spikelet development through the cooperative TSD1-YABBY module.
- These YABBY proteins can form either homodimers or heterodimers and play an important role in spikelet morphogenesis, similar to TSD1.
Functional Keywords
Literature and News
- THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature . DOI: 10.1111/nph.18551 ; PMID: 36263719
- Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature . DOI: 10.1093/plphys/kiac576 ; PMID: 36517254
Sequences
cDNA Sequence
- >LOC_Os02g18370.1
ATGGAGGACGTGCTGATGCACATCCTTCCAGTTGATTCCGAACAGAGAATTGCAGAGAATTGGAATCGGTTAAGTGCTTTCGGTGAAATTGACCTTTTTAAGAGATCTGTTCTCCAGGTTTTTGCTCGTGTAAACAATCTGGGGAATGAAATTTCTCCTGTACAAGCCTGGTGCCAACCAGAGCTGCGCGGCGAAAAGACCAGTAACAATGATGGGCAAACGGTGATAACTCCAGTCGAGTTGATCAAGAAACCTGTTGAGAAGCAAGTGATAACAGAAGGAAGACTGCAGCTCGCTGGTGATGGCTATCAGCTGCTATCTTCAAATGGCATAGACAAAACTGCAGAACAACTATACGTGGATCAATTAGGGAGACAAACCAACTCAATGGACCAATCACTGCAGCATACTGATGGACAAAACCAATCACATGATAATATGGAAAGCAATGAAGTGTCAAGCGATGATAGAAACAGTGATGGCGATTCTGACAGAAGCCTAGGAAATGAATCAGATAAAGGGCTTGGAGCACACTATAGTCCTAGTTTAATGGAATTGGATAATGCAAGACCACCAGAACTTGGAATGAAATTTGCAACACTTGAAGATGCACAGAGATTCTATGAGACACATGCTCTTAAAACTGGCTTTGTTGCAAAGCGGGGGACGAACTACAGGAGAAAAAAGTTTACCATAGAGTGCCACAAGACTGGCACATCAAAGCTAACTCCGAACCCACAGAGGAAGAGGAAGAAAAATATTATAGAGAGGACTCAATGCCAGGCAAAGGTGGTAGTGAAGCTCAATAAGGGACAATGGGAGTATGCAGCAGTCCGGAATGAACACAACCATCCATTGTGTCCTAGCTATTCGCTTAGATTCTCAAAGCGCAAACGCAGGCGAAATCCTCCAAGCCAGAAACAGCTGGATGTTCAGAGAAATAGTGACCAACTGACACAGGCAGATAATCTTGAGGAACGGTTGTCGCAACCTCTTATTTCAGCTGATTCAAATGAAGTAAACAACAAAAGGATGCCTAGACATGCAGAGATTAGTATATCTACTGTAGAGAAGGAACCTGTTGACAAACTACAGCGAGCTGGTGATTATCAGGAGCAATCTTCAAATGGCATAGACAAAAATACAGAACGACCAATTGTAGATAAATTGGGAGACCAAACAAGCTCGATAGACCATTCACTTCAGCATACTGAAGAGCATAACAGATCACATGATAATGTGGAAAGCAGTGAAGCGCCAAGCGAGGATACAAGCAGTGAAAGCAATTCAGACAGCAGCTCAGGTGATGAGTCGGATAAGGAGCTTGGGAAGTACTTCTATCCTAGTTTCGACGAACTGAAGAATTCAAGACCACCAGAACCCGGAATGAAATTTCCATCCCTTCAAGCCGCACAAAGATTCTATTACGCACATGCTCTCCTTACTGGTTTTGTAGGAAAGAGGGGAACCAACTACAAGAGAAAGAAGTTTCACTTAGAATGCAACAAGAGTGGCAAAATGAAGTTAACGAAGTCATCTGAAAACCCAATGAAGAAGAGGAGAAGCAATCTTGTAGAGAAGACACAATGCAAGGCAAGGGTGATAGTGAAACTCGATAAGGGAGAATGGGAGTTCACAGCAGTTCGCCATGAGCACAATCATCCGTTATGCCCAAGCCCTTTGCTTGCAAGATTCATAGTAGACCACAAACAAATGTCAACTGGAGAGAAGTCATTTTTAAGAGTTCTGCAACAAAATAGGGTACCTCCTAAGAAAATTATGAAGATTTTCAGGAAACTAAGAGTTTGTTTCGGAGACATACCATTTGAAAATAAAGATGAGCACAACATAGCACAGACAGAACATAGAAAAGCAAACTCAGATGTTGAAAGCGCATTGAAGCACTTCACAGAATTGCAGATTCAAAACCCAGAATTTCTGTACGTAATGCAAAAAGATGAGGACAACACAGTTACAAGCATCTTCTGGACTGATGCAAGATTGAGGATCGAGTATGATATTTTCGGAGATCTCATTATGTTTGATGCTGCCTATAGCACTGATATGTATAACATGCCTTTTGTGCCTATTATTGGAATAAATAGCCACGCGACACCCTTCCTGTTAGGATGTGCTTTGTTAAAAGATGAGAAAGTAGAAACCTTCGAATGGATGTTGCGTACATTTTTGCAAGTGATGGGAGGAAAAATGCCAAGAGCGGTCATAACAAACCAGGACACATCAATGGAGAAGGCATTTGCAGAACTCATGCCGCATGTAAGGCTTAGGTTTTGCAAGCGGCATGTTATGAGCAAAGCTCAGGAAAAGCTTGGAGACTTCATGACAGCAAGAGGTAACATAAATACAGATCTACATAACTTAGTAGGCAACTCGCTGGTAGAAACAGAATTTGAAGAAGGATGGGTTGAGCTTATTGAGAGATACAATGCAAGTGAAAACCAACACCTGCAACTCATGTGGCAAACAAGAAAAAGTTGGGCACCTGTCTATTTTAGAGAAGATCTCTACCCATTTATTGACTCAGTTGGTTCCAACGAGGGAATAAACTCATTATTTAAAGGTAATATGCTTCCAAAGGACACAATAGATAAGTTCATTGGGCAATTTAAGGAGATACAAGAGAATATAGCAAAAGTTCATGAAGAAGATAGATTTCAGTCAGGAGCTGACCTTAAATACATCTCAATGCAACCAATAGAACAACATGCAGCACATATTTACACAAGGGAAATATTTCTGAAAGTACAGGAAGAACTACTACATTCTACTGCATTCAACGTGCAGGAGATACAAATAGGGACAGTGTACAGACTTGAAAAGGTCTTCAACTATGAGAACCCAGAGTTTGATAGAAATTATTTTGAAGTGCTTGCTGAACCTGGCATCAATGCATTCAAGTGCCAATGTGCAAAATTTACAAGGGATGGAATACCTTGCTGCCACATATTCAGACTTTTCACTCAGTTTGGAATCAATGAAATACCAGAGCAGTACATAATGCCCAGATGGACTAAAAAATTCAGAGAGGAGCAGCTAAAACAGAACAAGGAAAAATTATTTGACAAGCATGGTATAAAGGATTCAGAAAATACATTGAGATATGCAATGCTAATGAGTAAAGCGGCTGAAATTTGCCCGAAAATTTGCCATGATGAAGCAAAATGCAGCATATTCATGCAGGAACTAGACAAGATTCAAGAGAAGTTGATAACGGAGAGCAGAGAAAATGCACAGAATGATAACCCATGTCGTGAACAAGGGGCCTTGCAACAGGAGCATCGTGGGAGCAGTAGCAATACAGAGCAAGAGCAACAGCATACAGGTGGCTTGTAAGGCACAGTGATGCTTGGTCCAAAATGTGCAGTGGGTCAGTAGAGCATTACGGGAGTGAGCCAATTGATCTCTTTGTGCGGGTTCTGGTCTTCTGGAGGAGACTATTTTGTCCAGGAAGTAGAATGGTTAGTATAGTTAGTTTAGCTGAAGTTAGTTGTGGTAAACTTGTCTGTTAGGAAAGTGTTGGTCGAGAGCAGGAAGACGTGTAAAGATGCATTGTATCTATTAGCTCTCCTGTCTAAACATGCATCTTGGTTCGCGGCAGTATGGGAAGCTGATAGTTAATTGACATCTGTGTTCGCCAA
CDS Sequence
- >LOC_Os02g18370.1
ATGGAGGACGTGCTGATGCACATCCTTCCAGTTGATTCCGAACAGAGAATTGCAGAGAATTGGAATCGGTTAAGTGCTTTCGGTGAAATTGACCTTTTTAAGAGATCTGTTCTCCAGGTTTTTGCTCGTGTAAACAATCTGGGGAATGAAATTTCTCCTGTACAAGCCTGGTGCCAACCAGAGCTGCGCGGCGAAAAGACCAGTAACAATGATGGGCAAACGGTGATAACTCCAGTCGAGTTGATCAAGAAACCTGTTGAGAAGCAAGTGATAACAGAAGGAAGACTGCAGCTCGCTGGTGATGGCTATCAGCTGCTATCTTCAAATGGCATAGACAAAACTGCAGAACAACTATACGTGGATCAATTAGGGAGACAAACCAACTCAATGGACCAATCACTGCAGCATACTGATGGACAAAACCAATCACATGATAATATGGAAAGCAATGAAGTGTCAAGCGATGATAGAAACAGTGATGGCGATTCTGACAGAAGCCTAGGAAATGAATCAGATAAAGGGCTTGGAGCACACTATAGTCCTAGTTTAATGGAATTGGATAATGCAAGACCACCAGAACTTGGAATGAAATTTGCAACACTTGAAGATGCACAGAGATTCTATGAGACACATGCTCTTAAAACTGGCTTTGTTGCAAAGCGGGGGACGAACTACAGGAGAAAAAAGTTTACCATAGAGTGCCACAAGACTGGCACATCAAAGCTAACTCCGAACCCACAGAGGAAGAGGAAGAAAAATATTATAGAGAGGACTCAATGCCAGGCAAAGGTGGTAGTGAAGCTCAATAAGGGACAATGGGAGTATGCAGCAGTCCGGAATGAACACAACCATCCATTGTGTCCTAGCTATTCGCTTAGATTCTCAAAGCGCAAACGCAGGCGAAATCCTCCAAGCCAGAAACAGCTGGATGTTCAGAGAAATAGTGACCAACTGACACAGGCAGATAATCTTGAGGAACGGTTGTCGCAACCTCTTATTTCAGCTGATTCAAATGAAGTAAACAACAAAAGGATGCCTAGACATGCAGAGATTAGTATATCTACTGTAGAGAAGGAACCTGTTGACAAACTACAGCGAGCTGGTGATTATCAGGAGCAATCTTCAAATGGCATAGACAAAAATACAGAACGACCAATTGTAGATAAATTGGGAGACCAAACAAGCTCGATAGACCATTCACTTCAGCATACTGAAGAGCATAACAGATCACATGATAATGTGGAAAGCAGTGAAGCGCCAAGCGAGGATACAAGCAGTGAAAGCAATTCAGACAGCAGCTCAGGTGATGAGTCGGATAAGGAGCTTGGGAAGTACTTCTATCCTAGTTTCGACGAACTGAAGAATTCAAGACCACCAGAACCCGGAATGAAATTTCCATCCCTTCAAGCCGCACAAAGATTCTATTACGCACATGCTCTCCTTACTGGTTTTGTAGGAAAGAGGGGAACCAACTACAAGAGAAAGAAGTTTCACTTAGAATGCAACAAGAGTGGCAAAATGAAGTTAACGAAGTCATCTGAAAACCCAATGAAGAAGAGGAGAAGCAATCTTGTAGAGAAGACACAATGCAAGGCAAGGGTGATAGTGAAACTCGATAAGGGAGAATGGGAGTTCACAGCAGTTCGCCATGAGCACAATCATCCGTTATGCCCAAGCCCTTTGCTTGCAAGATTCATAGTAGACCACAAACAAATGTCAACTGGAGAGAAGTCATTTTTAAGAGTTCTGCAACAAAATAGGGTACCTCCTAAGAAAATTATGAAGATTTTCAGGAAACTAAGAGTTTGTTTCGGAGACATACCATTTGAAAATAAAGATGAGCACAACATAGCACAGACAGAACATAGAAAAGCAAACTCAGATGTTGAAAGCGCATTGAAGCACTTCACAGAATTGCAGATTCAAAACCCAGAATTTCTGTACGTAATGCAAAAAGATGAGGACAACACAGTTACAAGCATCTTCTGGACTGATGCAAGATTGAGGATCGAGTATGATATTTTCGGAGATCTCATTATGTTTGATGCTGCCTATAGCACTGATATGTATAACATGCCTTTTGTGCCTATTATTGGAATAAATAGCCACGCGACACCCTTCCTGTTAGGATGTGCTTTGTTAAAAGATGAGAAAGTAGAAACCTTCGAATGGATGTTGCGTACATTTTTGCAAGTGATGGGAGGAAAAATGCCAAGAGCGGTCATAACAAACCAGGACACATCAATGGAGAAGGCATTTGCAGAACTCATGCCGCATGTAAGGCTTAGGTTTTGCAAGCGGCATGTTATGAGCAAAGCTCAGGAAAAGCTTGGAGACTTCATGACAGCAAGAGGTAACATAAATACAGATCTACATAACTTAGTAGGCAACTCGCTGGTAGAAACAGAATTTGAAGAAGGATGGGTTGAGCTTATTGAGAGATACAATGCAAGTGAAAACCAACACCTGCAACTCATGTGGCAAACAAGAAAAAGTTGGGCACCTGTCTATTTTAGAGAAGATCTCTACCCATTTATTGACTCAGTTGGTTCCAACGAGGGAATAAACTCATTATTTAAAGGTAATATGCTTCCAAAGGACACAATAGATAAGTTCATTGGGCAATTTAAGGAGATACAAGAGAATATAGCAAAAGTTCATGAAGAAGATAGATTTCAGTCAGGAGCTGACCTTAAATACATCTCAATGCAACCAATAGAACAACATGCAGCACATATTTACACAAGGGAAATATTTCTGAAAGTACAGGAAGAACTACTACATTCTACTGCATTCAACGTGCAGGAGATACAAATAGGGACAGTGTACAGACTTGAAAAGGTCTTCAACTATGAGAACCCAGAGTTTGATAGAAATTATTTTGAAGTGCTTGCTGAACCTGGCATCAATGCATTCAAGTGCCAATGTGCAAAATTTACAAGGGATGGAATACCTTGCTGCCACATATTCAGACTTTTCACTCAGTTTGGAATCAATGAAATACCAGAGCAGTACATAATGCCCAGATGGACTAAAAAATTCAGAGAGGAGCAGCTAAAACAGAACAAGGAAAAATTATTTGACAAGCATGGTATAAAGGATTCAGAAAATACATTGAGATATGCAATGCTAATGAGTAAAGCGGCTGAAATTTGCCCGAAAATTTGCCATGATGAAGCAAAATGCAGCATATTCATGCAGGAACTAGACAAGATTCAAGAGAAGTTGATAACGGAGAGCAGAGAAAATGCACAGAATGATAACCCATGTCGTGAACAAGGGGCCTTGCAACAGGAGCATCGTGGGAGCAGTAGCAATACAGAGCAAGAGCAACAGCATACAGGTGGCTTGTAA
Protein Sequence
- >LOC_Os02g18370.1
MEDVLMHILPVDSEQRIAENWNRLSAFGEIDLFKRSVLQVFARVNNLGNEISPVQAWCQPELRGEKTSNNDGQTVITPVELIKKPVEKQVITEGRLQLAGDGYQLLSSNGIDKTAEQLYVDQLGRQTNSMDQSLQHTDGQNQSHDNMESNEVSSDDRNSDGDSDRSLGNESDKGLGAHYSPSLMELDNARPPELGMKFATLEDAQRFYETHALKTGFVAKRGTNYRRKKFTIECHKTGTSKLTPNPQRKRKKNIIERTQCQAKVVVKLNKGQWEYAAVRNEHNHPLCPSYSLRFSKRKRRRNPPSQKQLDVQRNSDQLTQADNLEERLSQPLISADSNEVNNKRMPRHAEISISTVEKEPVDKLQRAGDYQEQSSNGIDKNTERPIVDKLGDQTSSIDHSLQHTEEHNRSHDNVESSEAPSEDTSSESNSDSSSGDESDKELGKYFYPSFDELKNSRPPEPGMKFPSLQAAQRFYYAHALLTGFVGKRGTNYKRKKFHLECNKSGKMKLTKSSENPMKKRRSNLVEKTQCKARVIVKLDKGEWEFTAVRHEHNHPLCPSPLLARFIVDHKQMSTGEKSFLRVLQQNRVPPKKIMKIFRKLRVCFGDIPFENKDEHNIAQTEHRKANSDVESALKHFTELQIQNPEFLYVMQKDEDNTVTSIFWTDARLRIEYDIFGDLIMFDAAYSTDMYNMPFVPIIGINSHATPFLLGCALLKDEKVETFEWMLRTFLQVMGGKMPRAVITNQDTSMEKAFAELMPHVRLRFCKRHVMSKAQEKLGDFMTARGNINTDLHNLVGNSLVETEFEEGWVELIERYNASENQHLQLMWQTRKSWAPVYFREDLYPFIDSVGSNEGINSLFKGNMLPKDTIDKFIGQFKEIQENIAKVHEEDRFQSGADLKYISMQPIEQHAAHIYTREIFLKVQEELLHSTAFNVQEIQIGTVYRLEKVFNYENPEFDRNYFEVLAEPGINAFKCQCAKFTRDGIPCCHIFRLFTQFGINEIPEQYIMPRWTKKFREEQLKQNKEKLFDKHGIKDSENTLRYAMLMSKAAEICPKICHDEAKCSIFMQELDKIQEKLITESRENAQNDNPCREQGALQQEHRGSSSNTEQEQQHTGGL*